HEADER TRANSFERASE 09-SEP-05 2AYZ TITLE SOLUTION STRUCTURE OF THE E.COLI RCSC C-TERMINUS (RESIDUES 817-949) TITLE 2 CONTAINING PHOSPHORECEIVER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR KINASE PROTEIN RCSC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHOSPHORECEIVER DOMAIN; COMPND 5 SYNONYM: CAPSULAR SYNTHESIS REGULATOR COMPONENT C; COMPND 6 EC: 2.7.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: RCSC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS PHOSPHORECEIVER DOMAIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR V.V.ROGOV,N.Y.ROGOVA,F.BERNHARD,A.KOGLIN,F.LOHR,V.DOTSCH REVDAT 4 09-MAR-22 2AYZ 1 REMARK REVDAT 3 24-FEB-09 2AYZ 1 VERSN REVDAT 2 07-NOV-06 2AYZ 1 JRNL AUTHOR REVDAT 1 26-SEP-06 2AYZ 0 JRNL AUTH V.V.ROGOV,N.Y.ROGOVA,F.BERNHARD,A.KOGLIN,F.LOHR,V.DOTSCH JRNL TITL A NEW STRUCTURAL DOMAIN IN THE ESCHERICHIA COLI RCSC HYBRID JRNL TITL 2 SENSOR KINASE CONNECTS HISTIDINE KINASE AND PHOSPHORECEIVER JRNL TITL 3 DOMAINS JRNL REF J.MOL.BIOL. V. 364 68 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17005198 JRNL DOI 10.1016/J.JMB.2006.07.052 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AYZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034470. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM C-RCSC U-15N; 33MM TRIS-HCL; REMARK 210 125 MM NACL; 1MM TCEP; 95% H2O, REMARK 210 5% D2O; 1MM C-RCSC U-15N, 13C; REMARK 210 33MM TRIS-HCL; 125MM NACL; 1MM REMARK 210 TCEP; 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, AURELIA 2.7.5, REMARK 210 SPARKY 3.111, DYANA 1.5 REMARK 210 METHOD USED : ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE 3D_13C-SEPARATED_NOESY WAS RECORDED IN THREE REMARK 210 MODIFICATIONS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 MET A 919 H ASP A 920 1.29 REMARK 500 OD1 ASP A 875 HZ1 LYS A 925 1.58 REMARK 500 OE2 GLU A 941 HZ3 LYS A 945 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 19 TYR A 884 CE1 TYR A 884 CZ 0.078 REMARK 500 19 TYR A 884 CZ TYR A 884 CE2 -0.081 REMARK 500 24 TYR A 884 CE1 TYR A 884 CZ 0.114 REMARK 500 24 TYR A 884 CZ TYR A 884 CE2 -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 818 -177.50 -170.51 REMARK 500 1 ASP A 823 -40.18 79.10 REMARK 500 1 ASP A 824 -56.50 77.95 REMARK 500 1 ASP A 856 160.29 161.03 REMARK 500 1 MET A 881 -58.05 -155.14 REMARK 500 1 ASP A 882 -149.27 -116.39 REMARK 500 1 TYR A 884 -79.12 -173.63 REMARK 500 1 ALA A 906 42.32 -98.55 REMARK 500 1 LEU A 907 -71.04 67.89 REMARK 500 1 MET A 919 -119.95 -106.98 REMARK 500 1 ASP A 920 -52.14 171.03 REMARK 500 2 ASN A 822 -74.31 -71.89 REMARK 500 2 ASP A 823 -26.30 -159.78 REMARK 500 2 ASP A 824 -65.86 76.02 REMARK 500 2 ASP A 856 164.30 160.58 REMARK 500 2 ALA A 906 49.24 -83.66 REMARK 500 2 LEU A 907 -74.09 66.10 REMARK 500 2 MET A 919 -118.54 -87.65 REMARK 500 2 ASP A 920 -52.96 165.74 REMARK 500 2 ASP A 948 63.82 61.06 REMARK 500 3 ASP A 821 -132.35 -107.36 REMARK 500 3 ASN A 822 -53.40 -161.27 REMARK 500 3 ASP A 823 -79.45 177.73 REMARK 500 3 ASP A 824 -62.66 173.49 REMARK 500 3 PRO A 834 -39.76 -35.03 REMARK 500 3 ASN A 855 73.09 -154.80 REMARK 500 3 ASP A 856 156.76 162.91 REMARK 500 3 ASP A 882 -179.26 66.07 REMARK 500 3 TYR A 884 -111.71 19.80 REMARK 500 3 ASN A 905 100.23 -55.32 REMARK 500 3 LEU A 907 -86.38 70.55 REMARK 500 3 ALA A 908 71.98 -166.77 REMARK 500 3 MET A 919 -126.11 -117.63 REMARK 500 3 ASP A 920 -48.06 170.58 REMARK 500 3 ASP A 948 82.44 58.95 REMARK 500 4 ALA A 818 -84.95 -126.14 REMARK 500 4 ASP A 823 88.38 52.85 REMARK 500 4 ASP A 856 164.28 162.06 REMARK 500 4 ILE A 869 151.65 66.25 REMARK 500 4 TYR A 884 -55.35 -138.90 REMARK 500 4 MET A 919 -113.24 -78.83 REMARK 500 4 ASP A 920 -53.94 160.43 REMARK 500 4 PRO A 926 59.59 -69.40 REMARK 500 4 ASP A 948 -82.19 -170.56 REMARK 500 5 ASN A 822 -89.74 -119.47 REMARK 500 5 ASP A 823 -133.70 -172.27 REMARK 500 5 ASP A 824 -67.93 165.08 REMARK 500 5 PRO A 834 -41.29 -29.31 REMARK 500 5 ASN A 855 73.31 -151.20 REMARK 500 5 ASP A 856 156.78 162.90 REMARK 500 REMARK 500 THIS ENTRY HAS 281 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6810 RELATED DB: BMRB REMARK 900 THE CHEMICAL SHIFT VALUES FOR THE C-TERMINAL PART OF RCSC (RESIDUES REMARK 900 700-949) REMARK 900 RELATED ID: 2AYX RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE E.COLI RCSC C-TERMINUS (RESIDUES 700-949) REMARK 900 CONTAINING LINKER REGION AND PHOSPHORECEIVER DOMAIN, 15 MODELS REMARK 900 RELATED ID: 2AYY RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF RCSC LINKER REGION (RESIDUES 700-816) BASED REMARK 900 ON SEPARATE SET OF NMR CONSTRAINTS, 25 MODELS DBREF 2AYZ A 817 949 UNP P14376 RCSC_ECOLI 817 949 SEQRES 1 A 133 LYS ALA VAL SER ASP ASN ASP ASP MET MET ILE LEU VAL SEQRES 2 A 133 VAL ASP ASP HIS PRO ILE ASN ARG ARG LEU LEU ALA ASP SEQRES 3 A 133 GLN LEU GLY SER LEU GLY TYR GLN CYS LYS THR ALA ASN SEQRES 4 A 133 ASP GLY VAL ASP ALA LEU ASN VAL LEU SER LYS ASN HIS SEQRES 5 A 133 ILE ASP ILE VAL LEU SER ASP VAL ASN MET PRO ASN MET SEQRES 6 A 133 ASP GLY TYR ARG LEU THR GLN ARG ILE ARG GLN LEU GLY SEQRES 7 A 133 LEU THR LEU PRO VAL ILE GLY VAL THR ALA ASN ALA LEU SEQRES 8 A 133 ALA GLU GLU LYS GLN ARG CYS LEU GLU SER GLY MET ASP SEQRES 9 A 133 SER CYS LEU SER LYS PRO VAL THR LEU ASP VAL ILE LYS SEQRES 10 A 133 GLN THR LEU THR LEU TYR ALA GLU ARG VAL ARG LYS SER SEQRES 11 A 133 ARG ASP SER HELIX 1 1 HIS A 833 GLY A 848 1 16 HELIX 2 2 ASP A 856 ASN A 867 1 12 HELIX 3 3 TYR A 884 GLY A 894 1 11 HELIX 4 4 ALA A 908 SER A 917 1 10 HELIX 5 5 THR A 928 ASP A 948 1 21 SHEET 1 A 5 GLN A 850 ALA A 854 0 SHEET 2 A 5 MET A 826 ASP A 831 1 N VAL A 829 O LYS A 852 SHEET 3 A 5 ILE A 871 VAL A 876 1 O LEU A 873 N VAL A 830 SHEET 4 A 5 VAL A 899 THR A 903 1 O VAL A 902 N VAL A 876 SHEET 5 A 5 ASP A 920 SER A 924 1 O SER A 921 N GLY A 901 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1