HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-SEP-05 2AZ4 TITLE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM ENTEROCOCCUS TITLE 2 FAECALIS V583 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN EF2904; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, ENTEROCOCCUS FAECALIS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,N.MALTSEVA,S.MOY,F.COLLART,M.CYMBOROWSKI,W.MINOR, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 14-FEB-24 2AZ4 1 REMARK REVDAT 4 13-APR-22 2AZ4 1 AUTHOR JRNL REMARK LINK REVDAT 3 13-JUL-11 2AZ4 1 VERSN REVDAT 2 24-FEB-09 2AZ4 1 VERSN REVDAT 1 25-OCT-05 2AZ4 0 JRNL AUTH R.ZHANG,N.MALTSEVA,S.MOY,F.COLLART,M.CYMBOROWSKI,W.MINOR, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE 2.0 A CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS V583 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 58647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3433 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7027 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9557 ; 1.392 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 849 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 346 ;36.051 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1206 ;16.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;12.869 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1075 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5380 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3379 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4767 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 555 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4406 ; 0.733 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6954 ; 1.234 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2930 ; 1.779 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2603 ; 2.863 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FRIEDEL PAIRS WERE USED IN REFINEMENT. REMARK 4 REMARK 4 2AZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116264 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG400, 1.7M AMMONIUM SULFATE, 0.1M REMARK 280 HEPES, PH 6.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.99800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.31200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.09100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.31200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.99800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.09100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS MONOMER. MOLA AND MOLB REPRESENT REMARK 300 TWO MOLECULES IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 791 O HOH A 942 2.08 REMARK 500 NE ARG A 41 OE2 GLU A 43 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 -126.95 50.53 REMARK 500 PHE A 34 143.40 -171.33 REMARK 500 ASP A 35 -136.69 -85.15 REMARK 500 PHE A 36 48.90 -156.70 REMARK 500 LEU A 66 -38.75 -131.87 REMARK 500 ASP A 105 115.36 -36.96 REMARK 500 PHE A 129 -61.67 -95.93 REMARK 500 ARG A 254 137.32 -179.62 REMARK 500 THR A 326 -30.07 -135.77 REMARK 500 SER A 348 79.31 -118.62 REMARK 500 LYS B 28 -121.48 51.57 REMARK 500 ASP B 35 -139.67 -86.12 REMARK 500 PHE B 36 53.70 -155.40 REMARK 500 ARG B 58 40.70 34.98 REMARK 500 LEU B 66 -40.31 -130.85 REMARK 500 PHE B 129 -60.18 -96.12 REMARK 500 ASN B 150 -7.34 80.63 REMARK 500 ASN B 196 0.31 88.68 REMARK 500 GLU B 224 64.84 89.48 REMARK 500 PRO B 227 -118.09 -111.91 REMARK 500 ASP B 228 -120.17 -92.71 REMARK 500 ARG B 254 141.11 -174.29 REMARK 500 THR B 326 -44.88 -137.34 REMARK 500 SER B 348 74.17 -111.40 REMARK 500 PRO B 358 8.77 -67.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 223 GLU B 224 34.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 92 NE2 REMARK 620 2 HIS A 94 ND1 92.9 REMARK 620 3 HIS A 167 NE2 94.3 93.5 REMARK 620 4 ASP A 189 OD2 89.1 169.8 96.3 REMARK 620 5 HOH A 795 O 101.2 89.5 164.1 80.3 REMARK 620 6 HOH A 941 O 169.1 90.7 95.8 85.6 68.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 96 OD2 REMARK 620 2 HIS A 97 NE2 87.0 REMARK 620 3 ASP A 189 OD2 160.7 90.1 REMARK 620 4 HIS A 404 NE2 85.9 95.9 113.3 REMARK 620 5 HOH A 652 O 90.6 171.0 89.3 92.6 REMARK 620 6 HOH A 795 O 78.3 93.0 82.9 161.4 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HIS B 94 ND1 89.9 REMARK 620 3 HIS B 167 NE2 99.4 92.0 REMARK 620 4 ASP B 189 OD2 91.6 171.4 96.1 REMARK 620 5 HOH B 616 O 176.9 92.4 82.7 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 96 OD2 REMARK 620 2 HIS B 97 NE2 87.3 REMARK 620 3 ASP B 189 OD2 163.0 90.7 REMARK 620 4 HIS B 404 NE2 86.5 94.2 110.5 REMARK 620 5 HOH B 781 O 83.2 167.5 96.1 93.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC29563 RELATED DB: TARGETDB DBREF 2AZ4 A 1 429 UNP Q82ZZ3 Q82ZZ3_ENTFA 1 429 DBREF 2AZ4 B 1 429 UNP Q82ZZ3 Q82ZZ3_ENTFA 1 429 SEQRES 1 A 429 MET GLU SER LYS ALA LYS THR THR VAL THR PHE HIS SER SEQRES 2 A 429 GLY ILE LEU THR ILE GLY GLY THR VAL ILE GLU VAL ALA SEQRES 3 A 429 TYR LYS ASP ALA HIS ILE PHE PHE ASP PHE GLY THR GLU SEQRES 4 A 429 PHE ARG PRO GLU LEU ASP LEU PRO ASP ASP HIS ILE GLU SEQRES 5 A 429 THR LEU ILE ASN ASN ARG LEU VAL PRO GLU LEU LYS ASP SEQRES 6 A 429 LEU TYR ASP PRO ARG LEU GLY TYR GLU TYR HIS GLY ALA SEQRES 7 A 429 GLU ASP LYS ASP TYR GLN HIS THR ALA VAL PHE LEU SER SEQRES 8 A 429 HIS ALA HIS LEU ASP HIS SER ARG MET ILE ASN TYR LEU SEQRES 9 A 429 ASP PRO ALA VAL PRO LEU TYR THR LEU LYS GLU THR LYS SEQRES 10 A 429 MET ILE LEU ASN SER LEU ASN ARG LYS GLY ASP PHE LEU SEQRES 11 A 429 ILE PRO SER PRO PHE GLU GLU LYS ASN PHE THR ARG GLU SEQRES 12 A 429 MET ILE GLY LEU ASN LYS ASN ASP VAL ILE LYS VAL GLY SEQRES 13 A 429 GLU ILE SER VAL GLU ILE VAL PRO VAL ASP HIS ASP ALA SEQRES 14 A 429 TYR GLY ALA SER ALA LEU LEU ILE ARG THR PRO ASP HIS SEQRES 15 A 429 PHE ILE THR TYR THR GLY ASP LEU ARG LEU HIS GLY HIS SEQRES 16 A 429 ASN ARG GLU GLU THR LEU ALA PHE CYS GLU LYS ALA LYS SEQRES 17 A 429 HIS THR GLU LEU LEU MET MET GLU GLY VAL SER ILE SER SEQRES 18 A 429 PHE PRO GLU ARG GLU PRO ASP PRO ALA GLN ILE ALA VAL SEQRES 19 A 429 VAL SER GLU GLU ASP LEU VAL GLN HIS LEU VAL ARG LEU SEQRES 20 A 429 GLU LEU GLU ASN PRO ASN ARG GLN ILE THR PHE ASN GLY SEQRES 21 A 429 TYR PRO ALA ASN VAL GLU ARG PHE ALA LYS ILE ILE GLU SEQRES 22 A 429 LYS SER PRO ARG THR VAL VAL LEU GLU ALA ASN MET ALA SEQRES 23 A 429 ALA LEU LEU LEU GLU VAL PHE GLY ILE GLU VAL ARG TYR SEQRES 24 A 429 TYR TYR ALA GLU SER GLY LYS ILE PRO GLU LEU ASN PRO SEQRES 25 A 429 ALA LEU GLU ILE PRO TYR ASP THR LEU LEU LYS ASP LYS SEQRES 26 A 429 THR ASP TYR LEU TRP GLN VAL VAL ASN GLN PHE ASP ASN SEQRES 27 A 429 LEU GLN GLU GLY SER LEU TYR ILE HIS SER ASP ALA GLN SEQRES 28 A 429 PRO LEU GLY ASP PHE ASP PRO GLN TYR ARG VAL PHE LEU SEQRES 29 A 429 ASP LEU LEU ALA LYS LYS ASP ILE THR PHE VAL ARG LEU SEQRES 30 A 429 ALA CYS SER GLY HIS ALA ILE PRO GLU ASP LEU ASP LYS SEQRES 31 A 429 ILE ILE ALA LEU ILE GLU PRO GLN VAL LEU VAL PRO ILE SEQRES 32 A 429 HIS THR LEU LYS PRO GLU LYS LEU GLU ASN PRO TYR GLY SEQRES 33 A 429 GLU ARG ILE LEU PRO GLU ARG GLY GLU GLN ILE VAL LEU SEQRES 1 B 429 MET GLU SER LYS ALA LYS THR THR VAL THR PHE HIS SER SEQRES 2 B 429 GLY ILE LEU THR ILE GLY GLY THR VAL ILE GLU VAL ALA SEQRES 3 B 429 TYR LYS ASP ALA HIS ILE PHE PHE ASP PHE GLY THR GLU SEQRES 4 B 429 PHE ARG PRO GLU LEU ASP LEU PRO ASP ASP HIS ILE GLU SEQRES 5 B 429 THR LEU ILE ASN ASN ARG LEU VAL PRO GLU LEU LYS ASP SEQRES 6 B 429 LEU TYR ASP PRO ARG LEU GLY TYR GLU TYR HIS GLY ALA SEQRES 7 B 429 GLU ASP LYS ASP TYR GLN HIS THR ALA VAL PHE LEU SER SEQRES 8 B 429 HIS ALA HIS LEU ASP HIS SER ARG MET ILE ASN TYR LEU SEQRES 9 B 429 ASP PRO ALA VAL PRO LEU TYR THR LEU LYS GLU THR LYS SEQRES 10 B 429 MET ILE LEU ASN SER LEU ASN ARG LYS GLY ASP PHE LEU SEQRES 11 B 429 ILE PRO SER PRO PHE GLU GLU LYS ASN PHE THR ARG GLU SEQRES 12 B 429 MET ILE GLY LEU ASN LYS ASN ASP VAL ILE LYS VAL GLY SEQRES 13 B 429 GLU ILE SER VAL GLU ILE VAL PRO VAL ASP HIS ASP ALA SEQRES 14 B 429 TYR GLY ALA SER ALA LEU LEU ILE ARG THR PRO ASP HIS SEQRES 15 B 429 PHE ILE THR TYR THR GLY ASP LEU ARG LEU HIS GLY HIS SEQRES 16 B 429 ASN ARG GLU GLU THR LEU ALA PHE CYS GLU LYS ALA LYS SEQRES 17 B 429 HIS THR GLU LEU LEU MET MET GLU GLY VAL SER ILE SER SEQRES 18 B 429 PHE PRO GLU ARG GLU PRO ASP PRO ALA GLN ILE ALA VAL SEQRES 19 B 429 VAL SER GLU GLU ASP LEU VAL GLN HIS LEU VAL ARG LEU SEQRES 20 B 429 GLU LEU GLU ASN PRO ASN ARG GLN ILE THR PHE ASN GLY SEQRES 21 B 429 TYR PRO ALA ASN VAL GLU ARG PHE ALA LYS ILE ILE GLU SEQRES 22 B 429 LYS SER PRO ARG THR VAL VAL LEU GLU ALA ASN MET ALA SEQRES 23 B 429 ALA LEU LEU LEU GLU VAL PHE GLY ILE GLU VAL ARG TYR SEQRES 24 B 429 TYR TYR ALA GLU SER GLY LYS ILE PRO GLU LEU ASN PRO SEQRES 25 B 429 ALA LEU GLU ILE PRO TYR ASP THR LEU LEU LYS ASP LYS SEQRES 26 B 429 THR ASP TYR LEU TRP GLN VAL VAL ASN GLN PHE ASP ASN SEQRES 27 B 429 LEU GLN GLU GLY SER LEU TYR ILE HIS SER ASP ALA GLN SEQRES 28 B 429 PRO LEU GLY ASP PHE ASP PRO GLN TYR ARG VAL PHE LEU SEQRES 29 B 429 ASP LEU LEU ALA LYS LYS ASP ILE THR PHE VAL ARG LEU SEQRES 30 B 429 ALA CYS SER GLY HIS ALA ILE PRO GLU ASP LEU ASP LYS SEQRES 31 B 429 ILE ILE ALA LEU ILE GLU PRO GLN VAL LEU VAL PRO ILE SEQRES 32 B 429 HIS THR LEU LYS PRO GLU LYS LEU GLU ASN PRO TYR GLY SEQRES 33 B 429 GLU ARG ILE LEU PRO GLU ARG GLY GLU GLN ILE VAL LEU HET ZN A 601 1 HET ZN A 602 1 HET ZN B 603 1 HET ZN B 604 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *537(H2 O) HELIX 1 1 HIS A 50 ASN A 57 1 8 HELIX 2 2 ASP A 68 GLY A 72 5 5 HELIX 3 3 HIS A 94 ARG A 99 1 6 HELIX 4 4 MET A 100 LEU A 104 5 5 HELIX 5 5 LYS A 114 ASN A 124 1 11 HELIX 6 6 ASN A 196 LYS A 208 1 13 HELIX 7 7 VAL A 218 PHE A 222 5 5 HELIX 8 8 SER A 236 GLU A 250 1 15 HELIX 9 9 ASN A 264 SER A 275 1 12 HELIX 10 10 ALA A 283 GLY A 294 1 12 HELIX 11 11 ASN A 311 GLU A 315 5 5 HELIX 12 12 PRO A 317 ASP A 324 1 8 HELIX 13 13 GLN A 335 LEU A 339 5 5 HELIX 14 14 ASP A 357 LYS A 370 1 14 HELIX 15 15 ILE A 384 GLU A 396 1 13 HELIX 16 16 LYS A 407 LEU A 411 5 5 HELIX 17 17 ARG B 41 ASP B 45 5 5 HELIX 18 18 HIS B 50 ASN B 57 1 8 HELIX 19 19 ASP B 68 GLY B 72 5 5 HELIX 20 20 HIS B 94 ARG B 99 1 6 HELIX 21 21 MET B 100 LEU B 104 5 5 HELIX 22 22 LYS B 114 ASN B 124 1 11 HELIX 23 23 ASN B 196 LYS B 208 1 13 HELIX 24 24 VAL B 218 SER B 221 5 4 HELIX 25 25 SER B 236 GLU B 250 1 15 HELIX 26 26 ASN B 264 SER B 275 1 12 HELIX 27 27 ALA B 283 GLY B 294 1 12 HELIX 28 28 ASN B 311 GLU B 315 5 5 HELIX 29 29 PRO B 317 ASP B 324 1 8 HELIX 30 30 GLN B 335 LEU B 339 5 5 HELIX 31 31 GLN B 359 LYS B 370 1 12 HELIX 32 32 ILE B 384 GLU B 396 1 13 HELIX 33 33 LYS B 407 LEU B 411 5 5 SHEET 1 A 7 ILE A 145 LEU A 147 0 SHEET 2 A 7 LEU A 110 LEU A 113 1 N LEU A 110 O ILE A 145 SHEET 3 A 7 HIS A 85 PHE A 89 1 N VAL A 88 O TYR A 111 SHEET 4 A 7 ALA A 30 PHE A 34 1 N PHE A 33 O PHE A 89 SHEET 5 A 7 VAL A 22 TYR A 27 -1 N ILE A 23 O PHE A 34 SHEET 6 A 7 THR A 7 SER A 13 -1 N THR A 8 O ALA A 26 SHEET 7 A 7 GLN A 426 VAL A 428 -1 O ILE A 427 N VAL A 9 SHEET 1 B 7 VAL A 152 VAL A 155 0 SHEET 2 B 7 ILE A 158 PRO A 164 -1 O ILE A 158 N VAL A 155 SHEET 3 B 7 SER A 173 THR A 179 -1 O ARG A 178 N SER A 159 SHEET 4 B 7 HIS A 182 TYR A 186 -1 O ILE A 184 N ILE A 177 SHEET 5 B 7 LEU A 212 GLU A 216 1 O MET A 214 N THR A 185 SHEET 6 B 7 VAL A 399 ILE A 403 1 O VAL A 401 N LEU A 213 SHEET 7 B 7 GLU A 417 ARG A 418 1 O GLU A 417 N LEU A 400 SHEET 1 C 6 ARG A 298 TYR A 300 0 SHEET 2 C 6 THR A 278 GLU A 282 1 N LEU A 281 O ARG A 298 SHEET 3 C 6 TYR A 328 GLN A 331 1 O GLN A 331 N VAL A 280 SHEET 4 C 6 ILE A 256 GLY A 260 1 N PHE A 258 O TRP A 330 SHEET 5 C 6 LEU A 344 SER A 348 1 O ILE A 346 N THR A 257 SHEET 6 C 6 THR A 373 ARG A 376 1 O VAL A 375 N HIS A 347 SHEET 1 D 7 ILE B 145 LEU B 147 0 SHEET 2 D 7 LEU B 110 LEU B 113 1 N LEU B 110 O ILE B 145 SHEET 3 D 7 HIS B 85 PHE B 89 1 N VAL B 88 O TYR B 111 SHEET 4 D 7 ALA B 30 PHE B 34 1 N PHE B 33 O PHE B 89 SHEET 5 D 7 VAL B 22 TYR B 27 -1 N ILE B 23 O PHE B 34 SHEET 6 D 7 THR B 7 SER B 13 -1 N THR B 10 O GLU B 24 SHEET 7 D 7 GLN B 426 VAL B 428 -1 O ILE B 427 N VAL B 9 SHEET 1 E 7 VAL B 152 VAL B 155 0 SHEET 2 E 7 ILE B 158 PRO B 164 -1 O ILE B 158 N VAL B 155 SHEET 3 E 7 SER B 173 THR B 179 -1 O ARG B 178 N SER B 159 SHEET 4 E 7 HIS B 182 TYR B 186 -1 O ILE B 184 N ILE B 177 SHEET 5 E 7 LEU B 212 GLU B 216 1 O MET B 214 N THR B 185 SHEET 6 E 7 VAL B 399 ILE B 403 1 O VAL B 401 N LEU B 213 SHEET 7 E 7 GLU B 417 ARG B 418 1 O GLU B 417 N LEU B 400 SHEET 1 F 6 ARG B 298 TYR B 300 0 SHEET 2 F 6 THR B 278 GLU B 282 1 N LEU B 281 O ARG B 298 SHEET 3 F 6 TYR B 328 GLN B 331 1 O GLN B 331 N VAL B 280 SHEET 4 F 6 ILE B 256 GLY B 260 1 N PHE B 258 O TRP B 330 SHEET 5 F 6 LEU B 344 SER B 348 1 O LEU B 344 N THR B 257 SHEET 6 F 6 THR B 373 ARG B 376 1 O THR B 373 N TYR B 345 LINK NE2 HIS A 92 ZN ZN A 601 1555 1555 2.29 LINK ND1 HIS A 94 ZN ZN A 601 1555 1555 2.32 LINK OD2 ASP A 96 ZN ZN A 602 1555 1555 2.31 LINK NE2 HIS A 97 ZN ZN A 602 1555 1555 2.17 LINK NE2 HIS A 167 ZN ZN A 601 1555 1555 2.23 LINK OD2 ASP A 189 ZN ZN A 601 1555 1555 2.39 LINK OD2 ASP A 189 ZN ZN A 602 1555 1555 2.25 LINK NE2 HIS A 404 ZN ZN A 602 1555 1555 2.29 LINK ZN ZN A 601 O HOH A 795 1555 1555 2.31 LINK ZN ZN A 601 O HOH A 941 1555 1555 2.19 LINK ZN ZN A 602 O HOH A 652 1555 1555 2.34 LINK ZN ZN A 602 O HOH A 795 1555 1555 2.34 LINK NE2 HIS B 92 ZN ZN B 603 1555 1555 2.22 LINK ND1 HIS B 94 ZN ZN B 603 1555 1555 2.29 LINK OD2 ASP B 96 ZN ZN B 604 1555 1555 2.30 LINK NE2 HIS B 97 ZN ZN B 604 1555 1555 2.22 LINK NE2 HIS B 167 ZN ZN B 603 1555 1555 2.32 LINK OD2 ASP B 189 ZN ZN B 603 1555 1555 2.41 LINK OD2 ASP B 189 ZN ZN B 604 1555 1555 2.21 LINK NE2 HIS B 404 ZN ZN B 604 1555 1555 2.36 LINK ZN ZN B 603 O HOH B 616 1555 1555 2.35 LINK ZN ZN B 604 O HOH B 781 1555 1555 2.56 CISPEP 1 PHE A 34 ASP A 35 0 -16.87 CISPEP 2 GLN A 351 PRO A 352 0 -4.43 CISPEP 3 PHE B 34 ASP B 35 0 -16.23 CISPEP 4 GLU B 226 PRO B 227 0 -24.48 CISPEP 5 ASP B 228 PRO B 229 0 -17.54 CISPEP 6 PRO B 229 ALA B 230 0 6.42 CISPEP 7 GLN B 351 PRO B 352 0 -5.31 SITE 1 AC1 7 HIS A 92 HIS A 94 HIS A 167 ASP A 189 SITE 2 AC1 7 ZN A 602 HOH A 795 HOH A 941 SITE 1 AC2 7 ASP A 96 HIS A 97 ASP A 189 HIS A 404 SITE 2 AC2 7 ZN A 601 HOH A 652 HOH A 795 SITE 1 AC3 6 HIS B 92 HIS B 94 HIS B 167 ASP B 189 SITE 2 AC3 6 ZN B 604 HOH B 616 SITE 1 AC4 6 ASP B 96 HIS B 97 ASP B 189 HIS B 404 SITE 2 AC4 6 ZN B 603 HOH B 781 CRYST1 57.996 74.182 214.624 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004659 0.00000