HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 15-SEP-05 2B0Z TITLE CRYSTAL STRUCTURE OF THE PROTEIN-PROTEIN COMPLEX BETWEEN F82I TITLE 2 CYTOCHROME C AND CYTOCHROME C PEROXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CCP; COMPND 5 EC: 1.11.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYTOCHROME C ISO-1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CCP1, CCP, CPO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: CYC1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, ELECTRON TRANSFER, OXIDOREDUCTASE-ELECTRON TRANSPORT KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.KANG,B.R.CRANE REVDAT 7 20-OCT-21 2B0Z 1 SEQADV REVDAT 6 03-MAR-21 2B0Z 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 HETSYN FORMUL LINK ATOM REVDAT 5 11-OCT-17 2B0Z 1 REMARK REVDAT 4 13-JUL-11 2B0Z 1 VERSN REVDAT 3 24-FEB-09 2B0Z 1 VERSN REVDAT 2 22-NOV-05 2B0Z 1 JRNL REVDAT 1 25-OCT-05 2B0Z 0 JRNL AUTH S.A.KANG,B.R.CRANE JRNL TITL EFFECTS OF INTERFACE MUTATIONS ON ASSOCIATION MODES AND JRNL TITL 2 ELECTRON-TRANSFER RATES BETWEEN PROTEINS JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 15465 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16227441 JRNL DOI 10.1073/PNAS.0505176102 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 798 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.418 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3405 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4621 ; 2.266 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 1.566 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;42.011 ;24.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;24.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;29.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.169 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2652 ; 0.021 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1287 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 72 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.375 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2043 ; 2.028 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3194 ; 3.379 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1606 ; 5.527 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1423 ; 8.100 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -4 B 103 REMARK 3 RESIDUE RANGE : B 109 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2778 -2.1984 51.7825 REMARK 3 T TENSOR REMARK 3 T11: 0.4698 T22: -0.0809 REMARK 3 T33: 0.1908 T12: -0.0781 REMARK 3 T13: 0.2231 T23: -0.1526 REMARK 3 L TENSOR REMARK 3 L11: 13.5189 L22: 11.3915 REMARK 3 L33: 10.4132 L12: -2.7100 REMARK 3 L13: -3.4283 L23: 1.2364 REMARK 3 S TENSOR REMARK 3 S11: -0.9128 S12: 0.8251 S13: -1.6844 REMARK 3 S21: -0.9491 S22: 0.5010 S23: -0.7420 REMARK 3 S31: 1.1727 S32: 0.6404 S33: 0.4118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 294 REMARK 3 RESIDUE RANGE : A 295 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8705 21.2203 75.4552 REMARK 3 T TENSOR REMARK 3 T11: -0.2413 T22: -0.1059 REMARK 3 T33: -0.1873 T12: -0.1758 REMARK 3 T13: 0.1097 T23: -0.0982 REMARK 3 L TENSOR REMARK 3 L11: 5.5685 L22: 3.5641 REMARK 3 L33: 8.4957 L12: -0.8595 REMARK 3 L13: -2.1720 L23: -0.4014 REMARK 3 S TENSOR REMARK 3 S11: 0.5204 S12: -0.8459 S13: 0.6666 REMARK 3 S21: -0.2270 S22: 0.0967 S23: -0.0973 REMARK 3 S31: -0.9858 S32: 0.6561 S33: -0.6171 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5866 12.8526 67.5586 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: -0.1465 REMARK 3 T33: 0.1124 T12: -0.0139 REMARK 3 T13: -0.0680 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.5962 L22: 0.1868 REMARK 3 L33: 0.1691 L12: 0.2344 REMARK 3 L13: -0.1309 L23: -0.1667 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.0704 S13: -0.0102 REMARK 3 S21: -0.1764 S22: 0.0022 S23: -0.1363 REMARK 3 S31: -0.0147 S32: 0.0729 S33: 0.0658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.90100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.83450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.99450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.83450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.90100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.99450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 152 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 173 O HOH A 566 2.09 REMARK 500 O VAL A 169 O HOH A 566 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 102 CB CYS B 102 SG -0.398 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 15 CA - CB - CG ANGL. DEV. = 20.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 146.95 13.81 REMARK 500 PRO A 3 -157.85 -63.91 REMARK 500 LYS A 12 99.94 -25.02 REMARK 500 ASP A 34 48.57 -83.63 REMARK 500 ASN A 62 48.47 23.85 REMARK 500 THR A 70 32.06 -72.26 REMARK 500 ASN A 141 144.28 -33.45 REMARK 500 ASP A 150 -165.32 -121.10 REMARK 500 ASN A 219 38.86 30.32 REMARK 500 GLN A 292 42.75 -90.68 REMARK 500 LYS B -1 -95.36 -81.72 REMARK 500 ALA B 0 126.27 174.16 REMARK 500 LYS B 27 -93.67 -118.83 REMARK 500 LEU B 32 22.52 -70.29 REMARK 500 ASN B 56 73.08 19.02 REMARK 500 TRP B 59 95.58 -64.13 REMARK 500 GLU B 61 -4.21 -49.23 REMARK 500 ASN B 70 82.47 -172.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 526 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 535 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 538 DISTANCE = 10.18 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 603 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH A 606 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 546 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 596 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 604 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZNH A 295 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 ZNH A 295 NA 112.4 REMARK 620 3 ZNH A 295 NB 91.7 87.2 REMARK 620 4 ZNH A 295 NC 96.7 150.8 89.1 REMARK 620 5 ZNH A 295 ND 109.1 85.6 159.2 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 109 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 109 NA 90.5 REMARK 620 3 HEC B 109 NB 97.5 91.3 REMARK 620 4 HEC B 109 NC 86.3 176.4 90.9 REMARK 620 5 HEC B 109 ND 80.6 89.1 178.0 88.6 REMARK 620 6 MET B 80 SD 166.9 87.7 95.5 95.0 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZNH A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 109 DBREF 2B0Z A 1 294 UNP P00431 CCPR_YEAST 68 361 DBREF 2B0Z B -4 103 UNP P00044 CYC1_YEAST 1 108 SEQADV 2B0Z ILE B 82 UNP P00044 PHE 87 ENGINEERED MUTATION SEQRES 1 A 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 A 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 A 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 A 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 A 294 THR SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 A 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 A 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 A 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 A 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 A 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG SEQRES 11 A 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 A 294 LEU PRO ASP ALA ASP LYS ASP ALA ASP TYR VAL ARG THR SEQRES 13 A 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 A 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 A 294 LYS ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN SEQRES 16 A 294 ASN VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 A 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 A 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 A 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 A 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 A 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 A 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 A 294 LYS THR LEU GLU GLU GLN GLY LEU SEQRES 1 B 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA ILE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA CYS GLU HET ZNH A 295 43 HET HEC B 109 43 HETNAM ZNH PROTOPORPHYRIN IX CONTAINING ZN HETNAM HEC HEME C FORMUL 3 ZNH C34 H32 N4 O4 ZN FORMUL 4 HEC C34 H34 FE N4 O4 FORMUL 5 HOH *107(H2 O) HELIX 1 1 SER A 15 ASP A 33 1 19 HELIX 2 2 GLU A 35 ILE A 40 1 6 HELIX 3 4 PHE A 73 ASN A 78 1 6 HELIX 4 5 ASP A 79 ALA A 83 5 5 HELIX 5 6 LEU A 85 GLU A 93 1 9 HELIX 6 7 SER A 103 MET A 119 1 17 HELIX 7 8 PRO A 134 THR A 138 5 5 HELIX 8 9 ASP A 150 ARG A 160 1 11 HELIX 9 10 ASN A 164 MET A 172 1 9 HELIX 10 11 GLY A 173 LEU A 177 5 5 HELIX 11 12 HIS A 181 GLY A 186 1 6 HELIX 12 13 ASN A 200 GLU A 209 1 10 HELIX 13 14 LEU A 232 SER A 237 1 6 HELIX 14 15 ASP A 241 ASP A 254 1 14 HELIX 15 16 ASP A 254 GLU A 271 1 18 HELIX 16 17 LYS B 4 CYS B 14 1 11 HELIX 17 18 THR B 49 LYS B 55 1 7 HELIX 18 19 ASN B 62 THR B 69 1 8 HELIX 19 20 ASN B 70 ILE B 75 1 6 SHEET 1 A 2 HIS A 6 VAL A 7 0 SHEET 2 A 2 ILE A 274 THR A 275 1 O THR A 275 N HIS A 6 SHEET 1 B 2 LYS A 179 THR A 180 0 SHEET 2 B 2 GLY A 189 PRO A 190 -1 O GLY A 189 N THR A 180 SHEET 1 C 3 LYS A 212 LYS A 215 0 SHEET 2 C 3 GLU A 221 ASP A 224 -1 O ASP A 224 N LYS A 212 SHEET 3 C 3 MET A 230 MET A 231 -1 O MET A 231 N TRP A 223 LINK SG CYS B 14 CAB HEC B 109 1555 1555 1.52 LINK SG CYS B 14 CBB HEC B 109 1555 1555 1.94 LINK SG CYS B 17 CAC HEC B 109 1555 1555 1.81 LINK NE2 HIS A 175 ZN ZNH A 295 1555 1555 2.08 LINK NE2 HIS B 18 FE HEC B 109 1555 1555 2.14 LINK SD MET B 80 FE HEC B 109 1555 1555 2.20 SITE 1 AC1 18 PRO A 44 VAL A 45 VAL A 47 ARG A 48 SITE 2 AC1 18 TRP A 51 LEU A 171 MET A 172 ALA A 174 SITE 3 AC1 18 HIS A 175 GLY A 178 LYS A 179 THR A 180 SITE 4 AC1 18 HIS A 181 ASN A 184 SER A 185 TRP A 191 SITE 5 AC1 18 THR A 234 PHE A 266 SITE 1 AC2 19 ARG B 13 CYS B 14 CYS B 17 HIS B 18 SITE 2 AC2 19 VAL B 28 ILE B 35 SER B 40 GLY B 41 SITE 3 AC2 19 TYR B 46 TYR B 48 THR B 49 ASN B 52 SITE 4 AC2 19 TRP B 59 MET B 64 TYR B 67 THR B 78 SITE 5 AC2 19 LYS B 79 MET B 80 ILE B 82 CRYST1 43.802 51.989 183.669 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005445 0.00000