data_2B2B # _entry.id 2B2B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2B2B pdb_00002b2b 10.2210/pdb2b2b/pdb NDB DD0075 ? ? RCSB RCSB034587 ? ? WWPDB D_1000034587 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1FHY _pdbx_database_related.details 'Psoralen Cross-Linked D(Ccgctagcgg) Forms Holliday Junction' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2B2B _pdbx_database_status.recvd_initial_deposition_date 2005-09-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hays, F.A.' 1 'Yonggang, H.' 2 'Eichman, B.F.' 3 'Kong, W.' 4 'Hearst, J.' 5 'Ho, P.S.' 6 # _citation.id primary _citation.title 'Structural distortions in psoralen cross-linked DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hays, F.A.' 1 ? primary 'Yonggang, H.' 2 ? primary 'Eichman, B.F.' 3 ? primary 'Kong, W.' 4 ? primary 'Hearst, J.' 5 ? primary 'Ho, P.S.' 6 ? # _cell.entry_id 2B2B _cell.length_a 69.007 _cell.length_b 22.496 _cell.length_c 44.670 _cell.angle_alpha 90.00 _cell.angle_beta 128.80 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B2B _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3'" 3045.993 2 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 non-polymer syn "4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN" 258.269 1 ? ? ? ? 6 water nat water 18.015 194 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DC)(DT)(DA)(DG)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGCTAGCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;The d(CCGCTAGCGG) decamer DNA sequence was synthesized using- cyanoethyl phosphoramidite chemistry on an Applied Biosystems DNA synthesizer in the Center for Gene Research and Biotechnology at Oregon State University. The 5-O-dimethoxytrityl group was left attached to facilitate separation from failure sequences using reverse-phase HPLC. The target fraction was then dried overnight, detritylated using 3% acetic acid, desalted on a Sephadex (Sigma) G-25 size exclusion column and dried overnight. ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2B2B _struct_ref.pdbx_db_accession 2B2B _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2B2B A 1 ? 10 ? 2B2B 1 ? 10 ? 1 10 2 1 2B2B B 1 ? 10 ? 2B2B 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PSO non-polymer . "4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN" ? 'C15 H14 O4' 258.269 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 2B2B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;0.5 mM HMT-d(CCGCTAGCGG), 30 mM NaCacodylate (pH = 7.0), 25 mM calcium chloride and 5% 2-methyl-2,4-pentanediol (MPD) against a 30 mL reservoir solution of 15% MPD (boosted to 20% two weeks later), VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 NaCacodylate ? ? ? 1 2 1 'calcium chloride' ? ? ? 1 3 1 MPD ? ? ? 1 4 1 H2O ? ? ? 1 5 2 NaCacodylate ? ? ? 1 6 2 'calcium chloride' ? ? ? 1 7 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-03-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2B2B _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 26.89 _reflns.number_all 7306 _reflns.number_obs 7306 _reflns.percent_possible_obs 83 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.59 _reflns_shell.percent_possible_all 50.2 _reflns_shell.Rmerge_I_obs 0.628 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 653 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2B2B _refine.ls_number_reflns_obs 6518 _refine.ls_number_reflns_all 7306 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.89 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.21549 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20995 _refine.ls_R_factor_R_free 0.26162 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.8 _refine.ls_number_reflns_R_free 788 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.909 _refine.correlation_coeff_Fo_to_Fc_free 0.886 _refine.B_iso_mean 16.589 _refine.aniso_B[1][1] -0.79 _refine.aniso_B[2][2] 0.80 _refine.aniso_B[3][3] -0.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.40 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. Residue (B C 14 ) and Residue (B T 15 ) are not linked. Distance of O3*-P bond is 1.91 ; _refine.pdbx_starting_model 'pdb entry 1FHY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.130 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.093 _refine.overall_SU_B 2.492 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2B2B _refine_analyze.Luzzati_coordinate_error_obs 0.19 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 628 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 26.89 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 480 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.111 3.000 ? 714 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.137 0.200 ? 81 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.020 ? 223 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.366 0.200 ? 279 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.326 0.200 ? 269 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.290 0.200 ? 175 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.314 0.200 ? 5 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.275 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.219 0.200 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.188 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.054 1.500 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.500 3.000 ? 580 'X-RAY DIFFRACTION' ? r_scangle_it 3.041 4.500 ? 714 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 238 _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.254 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2B2B _struct.title 'Structural distortions in psoralen cross-linked DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2B2B _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Recombination, Psoralen, Nucleic Acid Structure, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 5 ? H N N 4 ? I N N 3 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DT 5 C5 ? ? ? 1_555 G PSO . C4 ? ? A DT 5 A PSO 21 1_555 ? ? ? ? ? ? ? 1.473 ? ? covale2 covale none ? A DT 5 C6 ? ? ? 1_555 G PSO . C3 ? ? A DT 5 A PSO 21 1_555 ? ? ? ? ? ? ? 1.462 ? ? covale3 covale none ? G PSO . "C4'" ? ? ? 1_555 B DT 5 C5 ? ? A PSO 21 B DT 15 1_555 ? ? ? ? ? ? ? 1.530 ? ? covale4 covale none ? G PSO . "C5'" ? ? ? 1_555 B DT 5 C6 ? ? A PSO 21 B DT 15 1_555 ? ? ? ? ? ? ? 1.489 ? ? metalc1 metalc ? ? A DC 4 OP1 ? ? ? 1_555 F NA . NA ? ? A DC 4 A NA 27 1_555 ? ? ? ? ? ? ? 2.604 ? ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 24 A HOH 33 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 24 A HOH 70 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 24 A HOH 166 1_555 ? ? ? ? ? ? ? 2.028 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 24 A HOH 180 1_555 ? ? ? ? ? ? ? 2.567 ? ? metalc6 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 25 A HOH 42 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc7 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 25 A HOH 90 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc8 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 25 A HOH 224 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc9 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 25 B HOH 75 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc10 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 27 A HOH 29 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc11 metalc ? ? F NA . NA ? ? ? 1_555 B DT 5 O4 ? ? A NA 27 B DT 15 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc12 metalc ? ? B DG 7 OP2 ? ? ? 1_555 H CA . CA ? ? B DG 17 B CA 23 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc13 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 23 B HOH 50 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc14 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 23 B HOH 93 1_555 ? ? ? ? ? ? ? 2.943 ? ? metalc15 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 23 B HOH 97 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc16 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 23 B HOH 223 1_555 ? ? ? ? ? ? ? 2.236 ? ? hydrog1 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DT 5 O2 ? ? A DG 7 B DT 15 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog8 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPM 22 ? 7 'BINDING SITE FOR RESIDUE SPM A 22' AC2 Software B CA 23 ? 6 'BINDING SITE FOR RESIDUE CA B 23' AC3 Software A NA 24 ? 6 'BINDING SITE FOR RESIDUE NA A 24' AC4 Software A CA 25 ? 4 'BINDING SITE FOR RESIDUE CA A 25' AC5 Software B NA 26 ? 5 'BINDING SITE FOR RESIDUE NA B 26' AC6 Software A NA 27 ? 4 'BINDING SITE FOR RESIDUE NA A 27' AC7 Software A PSO 21 ? 5 'BINDING SITE FOR RESIDUE PSO A 21' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 7 DG A 10 ? DG A 10 . ? 4_555 ? 3 AC1 7 DG A 10 ? DG A 10 . ? 3_555 ? 4 AC1 7 HOH J . ? HOH A 177 . ? 1_555 ? 5 AC1 7 DG B 9 ? DG B 19 . ? 2_666 ? 6 AC1 7 HOH K . ? HOH B 111 . ? 2_666 ? 7 AC1 7 HOH K . ? HOH B 204 . ? 2_666 ? 8 AC2 6 DG A 9 ? DG A 9 . ? 4_556 ? 9 AC2 6 DG B 7 ? DG B 17 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH B 50 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH B 93 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH B 97 . ? 1_555 ? 13 AC2 6 HOH K . ? HOH B 223 . ? 1_555 ? 14 AC3 6 HOH J . ? HOH A 33 . ? 1_555 ? 15 AC3 6 HOH J . ? HOH A 57 . ? 1_555 ? 16 AC3 6 HOH J . ? HOH A 70 . ? 1_555 ? 17 AC3 6 HOH J . ? HOH A 151 . ? 1_555 ? 18 AC3 6 HOH J . ? HOH A 166 . ? 1_555 ? 19 AC3 6 HOH J . ? HOH A 180 . ? 1_555 ? 20 AC4 4 HOH J . ? HOH A 42 . ? 1_555 ? 21 AC4 4 HOH J . ? HOH A 90 . ? 1_555 ? 22 AC4 4 HOH J . ? HOH A 224 . ? 1_555 ? 23 AC4 4 HOH K . ? HOH B 75 . ? 1_555 ? 24 AC5 5 HOH J . ? HOH A 36 . ? 2_656 ? 25 AC5 5 HOH J . ? HOH A 53 . ? 2_656 ? 26 AC5 5 HOH J . ? HOH A 126 . ? 2_656 ? 27 AC5 5 HOH J . ? HOH A 142 . ? 2_656 ? 28 AC5 5 HOH K . ? HOH B 48 . ? 3_556 ? 29 AC6 4 DC A 4 ? DC A 4 . ? 1_555 ? 30 AC6 4 HOH J . ? HOH A 29 . ? 1_555 ? 31 AC6 4 HOH J . ? HOH A 141 . ? 1_555 ? 32 AC6 4 DT B 5 ? DT B 15 . ? 1_555 ? 33 AC7 5 DC A 4 ? DC A 4 . ? 1_555 ? 34 AC7 5 DT A 5 ? DT A 5 . ? 1_555 ? 35 AC7 5 DA A 6 ? DA A 6 . ? 1_555 ? 36 AC7 5 DT B 5 ? DT B 15 . ? 1_555 ? 37 AC7 5 DA B 6 ? DA B 16 . ? 1_555 ? # _database_PDB_matrix.entry_id 2B2B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2B2B _atom_sites.fract_transf_matrix[1][1] 0.014491 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011653 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044452 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028726 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT Z A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DC 4 14 14 DC C B . n B 1 5 DT 5 15 15 DT Z B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 22 22 SPM SPM A . D 3 NA 1 24 24 NA NA A . E 4 CA 1 25 25 CA CA A . F 3 NA 1 27 27 NA NA A . G 5 PSO 1 21 21 PSO HMT A . H 4 CA 1 23 23 CA CA B . I 3 NA 1 26 26 NA NA B . J 6 HOH 1 29 29 HOH HOH A . J 6 HOH 2 32 32 HOH HOH A . J 6 HOH 3 33 33 HOH HOH A . J 6 HOH 4 34 34 HOH HOH A . J 6 HOH 5 35 35 HOH HOH A . J 6 HOH 6 36 36 HOH HOH A . J 6 HOH 7 37 37 HOH HOH A . J 6 HOH 8 39 39 HOH HOH A . J 6 HOH 9 42 42 HOH HOH A . J 6 HOH 10 46 46 HOH HOH A . J 6 HOH 11 47 47 HOH HOH A . J 6 HOH 12 52 52 HOH HOH A . J 6 HOH 13 53 53 HOH HOH A . J 6 HOH 14 56 56 HOH HOH A . J 6 HOH 15 57 57 HOH HOH A . J 6 HOH 16 59 59 HOH HOH A . J 6 HOH 17 60 60 HOH HOH A . J 6 HOH 18 62 62 HOH HOH A . J 6 HOH 19 65 65 HOH HOH A . J 6 HOH 20 70 70 HOH HOH A . J 6 HOH 21 73 73 HOH HOH A . J 6 HOH 22 74 74 HOH HOH A . J 6 HOH 23 76 76 HOH HOH A . J 6 HOH 24 77 77 HOH HOH A . J 6 HOH 25 80 80 HOH HOH A . J 6 HOH 26 81 81 HOH HOH A . J 6 HOH 27 86 86 HOH HOH A . J 6 HOH 28 88 88 HOH HOH A . J 6 HOH 29 90 90 HOH HOH A . J 6 HOH 30 92 92 HOH HOH A . J 6 HOH 31 94 94 HOH HOH A . J 6 HOH 32 100 100 HOH HOH A . J 6 HOH 33 106 106 HOH HOH A . J 6 HOH 34 112 112 HOH HOH A . J 6 HOH 35 114 114 HOH HOH A . J 6 HOH 36 115 115 HOH HOH A . J 6 HOH 37 117 117 HOH HOH A . J 6 HOH 38 118 118 HOH HOH A . J 6 HOH 39 119 119 HOH HOH A . J 6 HOH 40 120 120 HOH HOH A . J 6 HOH 41 122 122 HOH HOH A . J 6 HOH 42 124 124 HOH HOH A . J 6 HOH 43 125 125 HOH HOH A . J 6 HOH 44 126 126 HOH HOH A . J 6 HOH 45 127 127 HOH HOH A . J 6 HOH 46 128 128 HOH HOH A . J 6 HOH 47 132 132 HOH HOH A . J 6 HOH 48 134 134 HOH HOH A . J 6 HOH 49 139 139 HOH HOH A . J 6 HOH 50 140 140 HOH HOH A . J 6 HOH 51 141 141 HOH HOH A . J 6 HOH 52 142 142 HOH HOH A . J 6 HOH 53 147 147 HOH HOH A . J 6 HOH 54 149 149 HOH HOH A . J 6 HOH 55 151 151 HOH HOH A . J 6 HOH 56 152 152 HOH HOH A . J 6 HOH 57 153 153 HOH HOH A . J 6 HOH 58 154 154 HOH HOH A . J 6 HOH 59 157 157 HOH HOH A . J 6 HOH 60 158 158 HOH HOH A . J 6 HOH 61 160 160 HOH HOH A . J 6 HOH 62 161 161 HOH HOH A . J 6 HOH 63 165 165 HOH HOH A . J 6 HOH 64 166 166 HOH HOH A . J 6 HOH 65 170 170 HOH HOH A . J 6 HOH 66 173 173 HOH HOH A . J 6 HOH 67 174 174 HOH HOH A . J 6 HOH 68 176 176 HOH HOH A . J 6 HOH 69 177 177 HOH HOH A . J 6 HOH 70 178 178 HOH HOH A . J 6 HOH 71 180 180 HOH HOH A . J 6 HOH 72 181 181 HOH HOH A . J 6 HOH 73 183 183 HOH HOH A . J 6 HOH 74 187 187 HOH HOH A . J 6 HOH 75 190 190 HOH HOH A . J 6 HOH 76 191 191 HOH HOH A . J 6 HOH 77 193 193 HOH HOH A . J 6 HOH 78 194 194 HOH HOH A . J 6 HOH 79 197 197 HOH HOH A . J 6 HOH 80 200 200 HOH HOH A . J 6 HOH 81 201 201 HOH HOH A . J 6 HOH 82 206 206 HOH HOH A . J 6 HOH 83 210 210 HOH HOH A . J 6 HOH 84 213 213 HOH HOH A . J 6 HOH 85 214 214 HOH HOH A . J 6 HOH 86 217 217 HOH HOH A . J 6 HOH 87 218 218 HOH HOH A . J 6 HOH 88 220 220 HOH HOH A . J 6 HOH 89 224 224 HOH HOH A . K 6 HOH 1 28 28 HOH HOH B . K 6 HOH 2 30 30 HOH HOH B . K 6 HOH 3 31 31 HOH HOH B . K 6 HOH 4 38 38 HOH HOH B . K 6 HOH 5 40 40 HOH HOH B . K 6 HOH 6 41 41 HOH HOH B . K 6 HOH 7 43 43 HOH HOH B . K 6 HOH 8 44 44 HOH HOH B . K 6 HOH 9 45 45 HOH HOH B . K 6 HOH 10 48 48 HOH HOH B . K 6 HOH 11 49 49 HOH HOH B . K 6 HOH 12 50 50 HOH HOH B . K 6 HOH 13 51 51 HOH HOH B . K 6 HOH 14 54 54 HOH HOH B . K 6 HOH 15 55 55 HOH HOH B . K 6 HOH 16 58 58 HOH HOH B . K 6 HOH 17 61 61 HOH HOH B . K 6 HOH 18 63 63 HOH HOH B . K 6 HOH 19 64 64 HOH HOH B . K 6 HOH 20 66 66 HOH HOH B . K 6 HOH 21 67 67 HOH HOH B . K 6 HOH 22 68 68 HOH HOH B . K 6 HOH 23 69 69 HOH HOH B . K 6 HOH 24 71 71 HOH HOH B . K 6 HOH 25 72 72 HOH HOH B . K 6 HOH 26 75 75 HOH HOH B . K 6 HOH 27 78 78 HOH HOH B . K 6 HOH 28 79 79 HOH HOH B . K 6 HOH 29 82 82 HOH HOH B . K 6 HOH 30 83 83 HOH HOH B . K 6 HOH 31 84 84 HOH HOH B . K 6 HOH 32 85 85 HOH HOH B . K 6 HOH 33 89 89 HOH HOH B . K 6 HOH 34 91 91 HOH HOH B . K 6 HOH 35 93 93 HOH HOH B . K 6 HOH 36 95 95 HOH HOH B . K 6 HOH 37 96 96 HOH HOH B . K 6 HOH 38 97 97 HOH HOH B . K 6 HOH 39 98 98 HOH HOH B . K 6 HOH 40 99 99 HOH HOH B . K 6 HOH 41 101 101 HOH HOH B . K 6 HOH 42 102 102 HOH HOH B . K 6 HOH 43 103 103 HOH HOH B . K 6 HOH 44 104 104 HOH HOH B . K 6 HOH 45 105 105 HOH HOH B . K 6 HOH 46 107 107 HOH HOH B . K 6 HOH 47 108 108 HOH HOH B . K 6 HOH 48 109 109 HOH HOH B . K 6 HOH 49 110 110 HOH HOH B . K 6 HOH 50 111 111 HOH HOH B . K 6 HOH 51 113 113 HOH HOH B . K 6 HOH 52 116 116 HOH HOH B . K 6 HOH 53 121 121 HOH HOH B . K 6 HOH 54 123 123 HOH HOH B . K 6 HOH 55 129 129 HOH HOH B . K 6 HOH 56 130 130 HOH HOH B . K 6 HOH 57 131 131 HOH HOH B . K 6 HOH 58 133 133 HOH HOH B . K 6 HOH 59 135 135 HOH HOH B . K 6 HOH 60 136 136 HOH HOH B . K 6 HOH 61 137 137 HOH HOH B . K 6 HOH 62 138 138 HOH HOH B . K 6 HOH 63 143 143 HOH HOH B . K 6 HOH 64 144 144 HOH HOH B . K 6 HOH 65 145 145 HOH HOH B . K 6 HOH 66 146 146 HOH HOH B . K 6 HOH 67 148 148 HOH HOH B . K 6 HOH 68 150 150 HOH HOH B . K 6 HOH 69 155 155 HOH HOH B . K 6 HOH 70 156 156 HOH HOH B . K 6 HOH 71 159 159 HOH HOH B . K 6 HOH 72 162 162 HOH HOH B . K 6 HOH 73 163 163 HOH HOH B . K 6 HOH 74 164 164 HOH HOH B . K 6 HOH 75 167 167 HOH HOH B . K 6 HOH 76 168 168 HOH HOH B . K 6 HOH 77 169 169 HOH HOH B . K 6 HOH 78 172 172 HOH HOH B . K 6 HOH 79 175 175 HOH HOH B . K 6 HOH 80 179 179 HOH HOH B . K 6 HOH 81 184 184 HOH HOH B . K 6 HOH 82 185 185 HOH HOH B . K 6 HOH 83 186 186 HOH HOH B . K 6 HOH 84 188 188 HOH HOH B . K 6 HOH 85 189 189 HOH HOH B . K 6 HOH 86 192 192 HOH HOH B . K 6 HOH 87 195 195 HOH HOH B . K 6 HOH 88 196 196 HOH HOH B . K 6 HOH 89 198 198 HOH HOH B . K 6 HOH 90 199 199 HOH HOH B . K 6 HOH 91 202 202 HOH HOH B . K 6 HOH 92 203 203 HOH HOH B . K 6 HOH 93 204 204 HOH HOH B . K 6 HOH 94 205 205 HOH HOH B . K 6 HOH 95 208 208 HOH HOH B . K 6 HOH 96 209 209 HOH HOH B . K 6 HOH 97 211 211 HOH HOH B . K 6 HOH 98 212 212 HOH HOH B . K 6 HOH 99 215 215 HOH HOH B . K 6 HOH 100 216 216 HOH HOH B . K 6 HOH 101 219 219 HOH HOH B . K 6 HOH 102 221 221 HOH HOH B . K 6 HOH 103 222 222 HOH HOH B . K 6 HOH 104 223 223 HOH HOH B . K 6 HOH 105 225 225 HOH HOH B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, COVALENT' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 41.0166077463 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.8130268935 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 173 ? J HOH . 2 1 A HOH 181 ? J HOH . 3 1 B HOH 155 ? K HOH . 4 1 B HOH 189 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 4 ? A DC 4 ? 1_555 NA ? F NA . ? A NA 27 ? 1_555 O ? J HOH . ? A HOH 29 ? 1_555 52.5 ? 2 OP1 ? A DC 4 ? A DC 4 ? 1_555 NA ? F NA . ? A NA 27 ? 1_555 O4 ? B DT 5 ? B DT 15 ? 1_555 110.0 ? 3 O ? J HOH . ? A HOH 29 ? 1_555 NA ? F NA . ? A NA 27 ? 1_555 O4 ? B DT 5 ? B DT 15 ? 1_555 106.7 ? 4 O ? J HOH . ? A HOH 33 ? 1_555 NA ? D NA . ? A NA 24 ? 1_555 O ? J HOH . ? A HOH 70 ? 1_555 98.5 ? 5 O ? J HOH . ? A HOH 33 ? 1_555 NA ? D NA . ? A NA 24 ? 1_555 O ? J HOH . ? A HOH 166 ? 1_555 150.9 ? 6 O ? J HOH . ? A HOH 70 ? 1_555 NA ? D NA . ? A NA 24 ? 1_555 O ? J HOH . ? A HOH 166 ? 1_555 54.4 ? 7 O ? J HOH . ? A HOH 33 ? 1_555 NA ? D NA . ? A NA 24 ? 1_555 O ? J HOH . ? A HOH 180 ? 1_555 78.4 ? 8 O ? J HOH . ? A HOH 70 ? 1_555 NA ? D NA . ? A NA 24 ? 1_555 O ? J HOH . ? A HOH 180 ? 1_555 58.5 ? 9 O ? J HOH . ? A HOH 166 ? 1_555 NA ? D NA . ? A NA 24 ? 1_555 O ? J HOH . ? A HOH 180 ? 1_555 93.0 ? 10 O ? J HOH . ? A HOH 42 ? 1_555 CA ? E CA . ? A CA 25 ? 1_555 O ? J HOH . ? A HOH 90 ? 1_555 81.1 ? 11 O ? J HOH . ? A HOH 42 ? 1_555 CA ? E CA . ? A CA 25 ? 1_555 O ? J HOH . ? A HOH 224 ? 1_555 69.0 ? 12 O ? J HOH . ? A HOH 90 ? 1_555 CA ? E CA . ? A CA 25 ? 1_555 O ? J HOH . ? A HOH 224 ? 1_555 135.5 ? 13 O ? J HOH . ? A HOH 42 ? 1_555 CA ? E CA . ? A CA 25 ? 1_555 O ? K HOH . ? B HOH 75 ? 1_555 124.7 ? 14 O ? J HOH . ? A HOH 90 ? 1_555 CA ? E CA . ? A CA 25 ? 1_555 O ? K HOH . ? B HOH 75 ? 1_555 152.2 ? 15 O ? J HOH . ? A HOH 224 ? 1_555 CA ? E CA . ? A CA 25 ? 1_555 O ? K HOH . ? B HOH 75 ? 1_555 70.2 ? 16 OP2 ? B DG 7 ? B DG 17 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 50 ? 1_555 101.0 ? 17 OP2 ? B DG 7 ? B DG 17 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 93 ? 1_555 166.2 ? 18 O ? K HOH . ? B HOH 50 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 93 ? 1_555 70.0 ? 19 OP2 ? B DG 7 ? B DG 17 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 97 ? 1_555 78.2 ? 20 O ? K HOH . ? B HOH 50 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 97 ? 1_555 179.1 ? 21 O ? K HOH . ? B HOH 93 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 97 ? 1_555 110.8 ? 22 OP2 ? B DG 7 ? B DG 17 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 81.0 ? 23 O ? K HOH . ? B HOH 50 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 105.8 ? 24 O ? K HOH . ? B HOH 93 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 111.1 ? 25 O ? K HOH . ? B HOH 97 ? 1_555 CA ? H CA . ? B CA 23 ? 1_555 O ? K HOH . ? B HOH 223 ? 1_555 73.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 EPMR phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C5 A DT 5 ? ? C3 A PSO 21 ? ? 1.52 2 1 O A HOH 53 ? ? O A HOH 142 ? ? 2.00 3 1 C7 A DT 5 ? ? C4 A PSO 21 ? ? 2.03 4 1 O B HOH 130 ? ? O B HOH 131 ? ? 2.07 5 1 O2 B DC 12 ? ? O B HOH 63 ? ? 2.08 6 1 OP1 B DC 14 ? ? O B HOH 150 ? ? 2.09 7 1 OP2 B DG 19 ? ? O B HOH 51 ? ? 2.11 8 1 O A HOH 52 ? ? O A HOH 177 ? ? 2.12 9 1 O A HOH 120 ? ? O A HOH 174 ? ? 2.13 10 1 C5 B DT 15 ? ? "C5'" A PSO 21 ? ? 2.14 11 1 O A HOH 70 ? ? O A HOH 166 ? ? 2.15 12 1 O B HOH 28 ? ? O B HOH 38 ? ? 2.16 13 1 O B HOH 49 ? ? O B HOH 105 ? ? 2.16 14 1 N1 B DG 13 ? ? O B HOH 168 ? ? 2.16 15 1 C6 B DT 15 ? ? "C4'" A PSO 21 ? ? 2.18 16 1 N3 B DC 12 ? ? O B HOH 168 ? ? 2.19 17 1 OP1 B DG 13 ? ? O B HOH 159 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 127 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 98 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_666 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 5 ? ? C6 A DT 5 ? ? 1.514 1.339 0.175 0.007 N 2 1 "O3'" A DT 5 ? ? P A DA 6 ? ? 1.684 1.607 0.077 0.012 Y 3 1 "O3'" A DC 8 ? ? "C3'" A DC 8 ? ? 1.375 1.419 -0.044 0.006 N 4 1 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.267 1.305 -0.038 0.006 N 5 1 C5 B DT 15 ? ? C6 B DT 15 ? ? 1.546 1.339 0.207 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.97 104.50 -2.53 0.40 N 2 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 115.23 110.30 4.93 0.70 N 3 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 122.74 114.30 8.44 1.40 N 4 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 116.88 120.30 -3.42 0.40 N 5 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.74 108.30 3.44 0.30 N 6 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 96.22 102.40 -6.18 0.80 N 7 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 124.84 128.60 -3.76 0.60 N 8 1 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 110.78 106.00 4.78 0.60 N 9 1 "C1'" A DC 4 ? ? "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 103.30 110.10 -6.80 1.00 N 10 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 110.99 106.80 4.19 0.50 N 11 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 103.42 108.00 -4.58 0.70 N 12 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 123.75 118.90 4.85 0.60 N 13 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 101.27 108.00 -6.73 0.70 N 14 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 131.10 127.20 3.90 0.60 N 15 1 C4 A DT 5 ? ? C5 A DT 5 ? ? C6 A DT 5 ? ? 111.63 118.00 -6.37 0.60 N 16 1 C4 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 111.70 119.00 -7.30 0.60 N 17 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 114.20 122.90 -8.70 0.60 N 18 1 "C3'" A DT 5 ? ? "O3'" A DT 5 ? ? P A DA 6 ? ? 127.50 119.70 7.80 1.20 Y 19 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 102.50 108.00 -5.50 0.70 N 20 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.25 129.30 -4.05 0.50 N 21 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 114.21 110.60 3.61 0.50 N 22 1 N9 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 101.97 105.80 -3.83 0.40 N 23 1 N3 A DA 6 ? ? C4 A DA 6 ? ? N9 A DA 6 ? ? 132.26 127.40 4.86 0.80 N 24 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 113.23 108.30 4.93 0.30 N 25 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 115.99 111.90 4.09 0.50 N 26 1 "O3'" A DG 7 ? ? P A DC 8 ? ? OP1 A DC 8 ? ? 117.15 110.50 6.65 1.10 Y 27 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 100.86 108.00 -7.14 0.70 N 28 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.72 108.30 4.42 0.30 N 29 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 108.30 110.80 -2.50 0.40 N 30 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DC 12 ? ? 127.83 119.70 8.13 1.20 Y 31 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 112.90 108.30 4.60 0.30 N 32 1 C6 B DG 13 ? ? N1 B DG 13 ? ? C2 B DG 13 ? ? 121.18 125.10 -3.92 0.60 N 33 1 N3 B DG 13 ? ? C2 B DG 13 ? ? N2 B DG 13 ? ? 115.33 119.90 -4.57 0.70 N 34 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 100.91 108.00 -7.09 0.70 N 35 1 N1 B DT 15 ? ? "C1'" B DT 15 ? ? "C2'" B DT 15 ? ? 124.57 114.30 10.27 1.40 N 36 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 101.88 108.00 -6.12 0.70 N 37 1 C4 B DT 15 ? ? C5 B DT 15 ? ? C6 B DT 15 ? ? 113.62 118.00 -4.38 0.60 N 38 1 C4 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 114.01 119.00 -4.99 0.60 N 39 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 111.25 122.90 -11.65 0.60 N 40 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? "C2'" B DA 16 ? ? 109.90 106.80 3.10 0.50 N 41 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 102.57 108.00 -5.43 0.70 N 42 1 C8 B DG 17 ? ? N9 B DG 17 ? ? C4 B DG 17 ? ? 103.91 106.40 -2.49 0.40 N 43 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 102.16 108.00 -5.84 0.70 N 44 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? "C2'" B DG 19 ? ? 110.21 106.80 3.41 0.50 N 45 1 N9 B DG 20 ? ? "C1'" B DG 20 ? ? "C2'" B DG 20 ? ? 124.35 114.30 10.05 1.40 N 46 1 C2 B DG 20 ? ? N3 B DG 20 ? ? C4 B DG 20 ? ? 115.00 111.90 3.10 0.50 N 47 1 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 103.43 106.40 -2.97 0.40 N # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 DC _pdbx_validate_polymer_linkage.auth_seq_id_1 14 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 DT _pdbx_validate_polymer_linkage.auth_seq_id_2 15 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A SPM 22 ? N1 ? C SPM 1 N1 2 1 N 1 A SPM 22 ? C2 ? C SPM 1 C2 3 1 N 1 A SPM 22 ? C3 ? C SPM 1 C3 4 1 N 1 A SPM 22 ? C4 ? C SPM 1 C4 5 1 N 1 A SPM 22 ? N5 ? C SPM 1 N5 6 1 N 1 A SPM 22 ? C6 ? C SPM 1 C6 7 1 N 1 A SPM 22 ? C7 ? C SPM 1 C7 8 1 N 1 A SPM 22 ? C8 ? C SPM 1 C8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 NA NA NA N N 148 PSO O1 O Y N 149 PSO C2 C Y N 150 PSO C3 C Y N 151 PSO C4 C Y N 152 PSO C5 C Y N 153 PSO C6 C Y N 154 PSO C7 C Y N 155 PSO C8 C Y N 156 PSO C9 C Y N 157 PSO C10 C Y N 158 PSO "C4'" C Y N 159 PSO "C5'" C Y N 160 PSO "O6'" O Y N 161 PSO O11 O N N 162 PSO C12 C N N 163 PSO C13 C N N 164 PSO O14 O N N 165 PSO C15 C N N 166 PSO C16 C N N 167 PSO H3 H N N 168 PSO H5 H N N 169 PSO H121 H N N 170 PSO H122 H N N 171 PSO H123 H N N 172 PSO H131 H N N 173 PSO H132 H N N 174 PSO H14 H N N 175 PSO H151 H N N 176 PSO H152 H N N 177 PSO H153 H N N 178 PSO H161 H N N 179 PSO H162 H N N 180 PSO H163 H N N 181 SPM N1 N N N 182 SPM C2 C N N 183 SPM C3 C N N 184 SPM C4 C N N 185 SPM N5 N N N 186 SPM C6 C N N 187 SPM C7 C N N 188 SPM C8 C N N 189 SPM C9 C N N 190 SPM N10 N N N 191 SPM C11 C N N 192 SPM C12 C N N 193 SPM C13 C N N 194 SPM N14 N N N 195 SPM HN11 H N N 196 SPM HN12 H N N 197 SPM H21 H N N 198 SPM H22 H N N 199 SPM H31 H N N 200 SPM H32 H N N 201 SPM H41 H N N 202 SPM H42 H N N 203 SPM HN5 H N N 204 SPM H61 H N N 205 SPM H62 H N N 206 SPM H71 H N N 207 SPM H72 H N N 208 SPM H81 H N N 209 SPM H82 H N N 210 SPM H91 H N N 211 SPM H92 H N N 212 SPM HN0 H N N 213 SPM H111 H N N 214 SPM H112 H N N 215 SPM H121 H N N 216 SPM H122 H N N 217 SPM H131 H N N 218 SPM H132 H N N 219 SPM HN41 H N N 220 SPM HN42 H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 PSO O1 C2 sing Y N 152 PSO O1 C9 sing Y N 153 PSO C2 C3 sing Y N 154 PSO C2 O11 doub N N 155 PSO C3 C4 doub Y N 156 PSO C3 H3 sing N N 157 PSO C4 C10 sing Y N 158 PSO C4 C12 sing N N 159 PSO C5 C6 doub Y N 160 PSO C5 C10 sing Y N 161 PSO C5 H5 sing N N 162 PSO C6 C7 sing Y N 163 PSO C6 "C4'" sing Y N 164 PSO C7 C8 doub Y N 165 PSO C7 "O6'" sing Y N 166 PSO C8 C9 sing Y N 167 PSO C8 C16 sing N N 168 PSO C9 C10 doub Y N 169 PSO "C4'" "C5'" doub Y N 170 PSO "C4'" C13 sing N N 171 PSO "C5'" "O6'" sing Y N 172 PSO "C5'" C15 sing N N 173 PSO C12 H121 sing N N 174 PSO C12 H122 sing N N 175 PSO C12 H123 sing N N 176 PSO C13 O14 sing N N 177 PSO C13 H131 sing N N 178 PSO C13 H132 sing N N 179 PSO O14 H14 sing N N 180 PSO C15 H151 sing N N 181 PSO C15 H152 sing N N 182 PSO C15 H153 sing N N 183 PSO C16 H161 sing N N 184 PSO C16 H162 sing N N 185 PSO C16 H163 sing N N 186 SPM N1 C2 sing N N 187 SPM N1 HN11 sing N N 188 SPM N1 HN12 sing N N 189 SPM C2 C3 sing N N 190 SPM C2 H21 sing N N 191 SPM C2 H22 sing N N 192 SPM C3 C4 sing N N 193 SPM C3 H31 sing N N 194 SPM C3 H32 sing N N 195 SPM C4 N5 sing N N 196 SPM C4 H41 sing N N 197 SPM C4 H42 sing N N 198 SPM N5 C6 sing N N 199 SPM N5 HN5 sing N N 200 SPM C6 C7 sing N N 201 SPM C6 H61 sing N N 202 SPM C6 H62 sing N N 203 SPM C7 C8 sing N N 204 SPM C7 H71 sing N N 205 SPM C7 H72 sing N N 206 SPM C8 C9 sing N N 207 SPM C8 H81 sing N N 208 SPM C8 H82 sing N N 209 SPM C9 N10 sing N N 210 SPM C9 H91 sing N N 211 SPM C9 H92 sing N N 212 SPM N10 C11 sing N N 213 SPM N10 HN0 sing N N 214 SPM C11 C12 sing N N 215 SPM C11 H111 sing N N 216 SPM C11 H112 sing N N 217 SPM C12 C13 sing N N 218 SPM C12 H121 sing N N 219 SPM C12 H122 sing N N 220 SPM C13 N14 sing N N 221 SPM C13 H131 sing N N 222 SPM C13 H132 sing N N 223 SPM N14 HN41 sing N N 224 SPM N14 HN42 sing N N 225 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2B2B 'double helix' 2B2B 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 5 1_555 B DA 6 1_555 0.864 2.087 1.229 -45.397 -29.257 58.795 1 A_DT5:DA16_B A 5 ? B 16 ? ? ? 1 A DA 6 1_555 B DT 5 1_555 -0.297 -0.104 -0.876 -22.459 -25.586 3.013 2 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DG 7 1_555 B DC 4 1_555 -0.078 -0.110 0.342 5.264 -3.045 2.518 3 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.127 -0.147 0.357 2.252 -14.122 2.325 4 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.495 -0.314 0.465 9.383 -1.906 -2.599 5 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.370 -0.010 0.256 11.626 -11.181 1.143 6 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 0.517 0.773 2.625 -13.893 1.366 27.126 1.260 -3.134 2.147 2.698 27.434 30.447 1 AA_DA6DG7:DC14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.891 0.470 3.366 -1.134 -1.229 43.364 0.758 1.092 3.373 -1.663 1.534 43.394 2 AA_DG7DC8:DG13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.837 1.012 3.178 1.922 0.357 33.204 1.709 -1.148 3.231 0.624 -3.360 33.260 3 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.437 0.989 3.274 2.720 4.803 35.628 0.906 1.098 3.333 7.792 -4.412 36.039 4 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 'SODIUM ION' NA 4 'CALCIUM ION' CA 5 "4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN" PSO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FHY _pdbx_initial_refinement_model.details 'pdb entry 1FHY' #