HEADER TRANSCRIPTION, DNA REPAIR 19-SEP-05 2B2N TITLE STRUCTURE OF TRANSCRIPTION-REPAIR COUPLING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION-REPAIR COUPLING FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRCF; MFD PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MFD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS X-RAY CRYSTALLOGRAPHY; STRAND-SPECIFIC REPAIR; TEMPLATE STRAND; RNA KEYWDS 2 POLYMERASE; RNAP; UVRA/B/C REPAIR SYSTEM, TRANSCRIPTION, DNA REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR N.ASSENMACHER,K.WENIG,A.LAMMENS,K.-P.HOPFNER REVDAT 5 14-FEB-24 2B2N 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2B2N 1 REMARK REVDAT 3 13-JUL-11 2B2N 1 VERSN REVDAT 2 24-FEB-09 2B2N 1 VERSN REVDAT 1 24-JAN-06 2B2N 0 JRNL AUTH N.ASSENMACHER,K.WENIG,A.LAMMENS,K.-P.HOPFNER JRNL TITL STRUCTURAL BASIS FOR TRANSCRIPTION-COUPLED REPAIR: THE N JRNL TITL 2 TERMINUS OF MFD RESEMBLES UVRB WITH DEGENERATE ATPASE MOTIFS JRNL REF J.MOL.BIOL. V. 355 675 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16309703 JRNL DOI 10.1016/J.JMB.2005.10.033 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 47377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 433 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48900 REMARK 3 B22 (A**2) : 0.48900 REMARK 3 B33 (A**2) : -0.97800 REMARK 3 B12 (A**2) : -0.24600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.376 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.455 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.258 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.229 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.295 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97788, 0.9798, 0.97395 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, AMMONIUM REMARK 280 SULFATE, SODIUM FORMIATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.57333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.28667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.93000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.64333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 178.21667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 142.57333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.28667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.64333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.93000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 178.21667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 ARG A 6 REMARK 465 TYR A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 LYS A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 ARG A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 LEU A 22 REMARK 465 THR A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 334 REMARK 465 ALA A 335 REMARK 465 ALA A 336 REMARK 465 LEU A 337 REMARK 465 GLU A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 TYR B 5 REMARK 465 ARG B 6 REMARK 465 TYR B 7 REMARK 465 THR B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 VAL B 11 REMARK 465 LYS B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 14 REMARK 465 GLU B 15 REMARK 465 GLN B 16 REMARK 465 ARG B 17 REMARK 465 LEU B 18 REMARK 465 LEU B 19 REMARK 465 GLY B 20 REMARK 465 GLU B 21 REMARK 465 LEU B 22 REMARK 465 THR B 23 REMARK 465 GLY B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 335 REMARK 465 ALA B 336 REMARK 465 LEU B 337 REMARK 465 GLU B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 50 CD OE1 NE2 REMARK 480 ASN A 51 OD1 ND2 REMARK 480 ARG A 54 CD NE CZ NH1 NH2 REMARK 480 LEU A 128 CG CD1 CD2 REMARK 480 LYS A 131 CG CD CE NZ REMARK 480 ARG A 135 NE CZ NH1 NH2 REMARK 480 LYS A 221 CE NZ REMARK 480 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 267 OE1 OE2 REMARK 480 ASN A 284 OD1 ND2 REMARK 480 GLU A 289 CG CD OE1 OE2 REMARK 480 SER A 291 OG REMARK 480 ARG A 294 NE CZ NH1 NH2 REMARK 480 ASN A 333 CG OD1 ND2 REMARK 480 GLU B 33 OE1 OE2 REMARK 480 GLU B 36 OE1 OE2 REMARK 480 GLN B 50 OE1 NE2 REMARK 480 ASN B 69 OD1 ND2 REMARK 480 ASP B 86 OD1 OD2 REMARK 480 ALA B 127 CB REMARK 480 LEU B 128 CD1 CD2 REMARK 480 LYS B 131 CE NZ REMARK 480 ARG B 135 CD NE CZ NH1 NH2 REMARK 480 LEU B 171 CD1 CD2 REMARK 480 GLU B 188 OE1 OE2 REMARK 480 ASP B 190 OD1 OD2 REMARK 480 ASP B 196 OD1 OD2 REMARK 480 LYS B 221 CG CD CE NZ REMARK 480 GLU B 225 OE1 OE2 REMARK 480 GLU B 242 OE1 OE2 REMARK 480 LYS B 250 NZ REMARK 480 ASN B 279 OD1 ND2 REMARK 480 SER B 291 OG REMARK 480 GLU B 293 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 61 O HOH A 4202 2.01 REMARK 500 NH1 ARG A 142 OD2 ASP A 146 2.13 REMARK 500 OD2 ASP A 183 O HOH A 4134 2.17 REMARK 500 NE2 HIS B 124 O HOH B 4961 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 39 39.07 -77.97 REMARK 500 GLU A 74 -1.13 75.45 REMARK 500 MET A 157 -22.81 -145.13 REMARK 500 ARG A 165 116.02 -166.28 REMARK 500 LEU A 203 -136.97 -113.58 REMARK 500 ARG B 165 88.57 -156.67 REMARK 500 LEU B 203 -146.41 -114.38 REMARK 500 LEU B 288 -50.11 -125.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 P4C A 4034 REMARK 615 P4C B 4035 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 THR A 63 O 88.5 REMARK 620 3 SER B 60 O 97.3 93.5 REMARK 620 4 THR B 63 O 98.0 172.6 89.2 REMARK 620 5 HOH B4853 O 132.2 90.4 130.4 82.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 345 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 62 O REMARK 620 2 P4C A4034 O1 90.3 REMARK 620 3 P4C A4034 O10 84.2 173.7 REMARK 620 4 P4C A4034 O13 73.6 113.8 61.7 REMARK 620 5 P4C A4034 O4 99.3 59.5 124.3 170.8 REMARK 620 6 P4C A4034 O7 87.5 119.2 63.7 123.4 61.0 REMARK 620 7 HOH A4176 O 162.7 102.0 82.7 90.2 97.4 96.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B4850 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 62 O REMARK 620 2 P4C B4035 O13 70.1 REMARK 620 3 P4C B4035 O10 88.5 56.3 REMARK 620 4 P4C B4035 O7 90.8 116.8 63.9 REMARK 620 5 P4C B4035 O4 95.3 165.3 126.9 63.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4849 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 4850 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C A 4034 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4C B 4035 DBREF 2B2N A 1 333 UNP P30958 MFD_ECOLI 1 333 DBREF 2B2N B 1 333 UNP P30958 MFD_ECOLI 1 333 SEQADV 2B2N ALA A 334 UNP P30958 EXPRESSION TAG SEQADV 2B2N ALA A 335 UNP P30958 EXPRESSION TAG SEQADV 2B2N ALA A 336 UNP P30958 EXPRESSION TAG SEQADV 2B2N LEU A 337 UNP P30958 EXPRESSION TAG SEQADV 2B2N GLU A 338 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS A 339 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS A 340 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS A 341 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS A 342 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS A 343 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS A 344 UNP P30958 EXPRESSION TAG SEQADV 2B2N ALA B 334 UNP P30958 EXPRESSION TAG SEQADV 2B2N ALA B 335 UNP P30958 EXPRESSION TAG SEQADV 2B2N ALA B 336 UNP P30958 EXPRESSION TAG SEQADV 2B2N LEU B 337 UNP P30958 EXPRESSION TAG SEQADV 2B2N GLU B 338 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS B 339 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS B 340 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS B 341 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS B 342 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS B 343 UNP P30958 EXPRESSION TAG SEQADV 2B2N HIS B 344 UNP P30958 EXPRESSION TAG SEQRES 1 A 344 MET PRO GLU GLN TYR ARG TYR THR LEU PRO VAL LYS ALA SEQRES 2 A 344 GLY GLU GLN ARG LEU LEU GLY GLU LEU THR GLY ALA ALA SEQRES 3 A 344 CYS ALA THR LEU VAL ALA GLU ILE ALA GLU ARG HIS ALA SEQRES 4 A 344 GLY PRO VAL VAL LEU ILE ALA PRO ASP MET GLN ASN ALA SEQRES 5 A 344 LEU ARG LEU HIS ASP GLU ILE SER GLN PHE THR ASP GLN SEQRES 6 A 344 MET VAL MET ASN LEU ALA ASP TRP GLU THR LEU PRO TYR SEQRES 7 A 344 ASP SER PHE SER PRO HIS GLN ASP ILE ILE SER SER ARG SEQRES 8 A 344 LEU SER THR LEU TYR GLN LEU PRO THR MET GLN ARG GLY SEQRES 9 A 344 VAL LEU ILE VAL PRO VAL ASN THR LEU MET GLN ARG VAL SEQRES 10 A 344 CYS PRO HIS SER PHE LEU HIS GLY HIS ALA LEU VAL MET SEQRES 11 A 344 LYS LYS GLY GLN ARG LEU SER ARG ASP ALA LEU ARG THR SEQRES 12 A 344 GLN LEU ASP SER ALA GLY TYR ARG HIS VAL ASP GLN VAL SEQRES 13 A 344 MET GLU HIS GLY GLU TYR ALA THR ARG GLY ALA LEU LEU SEQRES 14 A 344 ASP LEU PHE PRO MET GLY SER GLU LEU PRO TYR ARG LEU SEQRES 15 A 344 ASP PHE PHE ASP ASP GLU ILE ASP SER LEU ARG VAL PHE SEQRES 16 A 344 ASP VAL ASP SER GLN ARG THR LEU GLU GLU VAL GLU ALA SEQRES 17 A 344 ILE ASN LEU LEU PRO ALA HIS GLU PHE PRO THR ASP LYS SEQRES 18 A 344 ALA ALA ILE GLU LEU PHE ARG SER GLN TRP ARG ASP THR SEQRES 19 A 344 PHE GLU VAL LYS ARG ASP PRO GLU HIS ILE TYR GLN GLN SEQRES 20 A 344 VAL SER LYS GLY THR LEU PRO ALA GLY ILE GLU TYR TRP SEQRES 21 A 344 GLN PRO LEU PHE PHE SER GLU PRO LEU PRO PRO LEU PHE SEQRES 22 A 344 SER TYR PHE PRO ALA ASN THR LEU LEU VAL ASN THR GLY SEQRES 23 A 344 ASP LEU GLU THR SER ALA GLU ARG PHE GLN ALA ASP THR SEQRES 24 A 344 LEU ALA ARG PHE GLU ASN ARG GLY VAL ASP PRO MET ARG SEQRES 25 A 344 PRO LEU LEU PRO PRO GLN SER LEU TRP LEU ARG VAL ASP SEQRES 26 A 344 GLU LEU PHE SER GLU LEU LYS ASN ALA ALA ALA LEU GLU SEQRES 27 A 344 HIS HIS HIS HIS HIS HIS SEQRES 1 B 344 MET PRO GLU GLN TYR ARG TYR THR LEU PRO VAL LYS ALA SEQRES 2 B 344 GLY GLU GLN ARG LEU LEU GLY GLU LEU THR GLY ALA ALA SEQRES 3 B 344 CYS ALA THR LEU VAL ALA GLU ILE ALA GLU ARG HIS ALA SEQRES 4 B 344 GLY PRO VAL VAL LEU ILE ALA PRO ASP MET GLN ASN ALA SEQRES 5 B 344 LEU ARG LEU HIS ASP GLU ILE SER GLN PHE THR ASP GLN SEQRES 6 B 344 MET VAL MET ASN LEU ALA ASP TRP GLU THR LEU PRO TYR SEQRES 7 B 344 ASP SER PHE SER PRO HIS GLN ASP ILE ILE SER SER ARG SEQRES 8 B 344 LEU SER THR LEU TYR GLN LEU PRO THR MET GLN ARG GLY SEQRES 9 B 344 VAL LEU ILE VAL PRO VAL ASN THR LEU MET GLN ARG VAL SEQRES 10 B 344 CYS PRO HIS SER PHE LEU HIS GLY HIS ALA LEU VAL MET SEQRES 11 B 344 LYS LYS GLY GLN ARG LEU SER ARG ASP ALA LEU ARG THR SEQRES 12 B 344 GLN LEU ASP SER ALA GLY TYR ARG HIS VAL ASP GLN VAL SEQRES 13 B 344 MET GLU HIS GLY GLU TYR ALA THR ARG GLY ALA LEU LEU SEQRES 14 B 344 ASP LEU PHE PRO MET GLY SER GLU LEU PRO TYR ARG LEU SEQRES 15 B 344 ASP PHE PHE ASP ASP GLU ILE ASP SER LEU ARG VAL PHE SEQRES 16 B 344 ASP VAL ASP SER GLN ARG THR LEU GLU GLU VAL GLU ALA SEQRES 17 B 344 ILE ASN LEU LEU PRO ALA HIS GLU PHE PRO THR ASP LYS SEQRES 18 B 344 ALA ALA ILE GLU LEU PHE ARG SER GLN TRP ARG ASP THR SEQRES 19 B 344 PHE GLU VAL LYS ARG ASP PRO GLU HIS ILE TYR GLN GLN SEQRES 20 B 344 VAL SER LYS GLY THR LEU PRO ALA GLY ILE GLU TYR TRP SEQRES 21 B 344 GLN PRO LEU PHE PHE SER GLU PRO LEU PRO PRO LEU PHE SEQRES 22 B 344 SER TYR PHE PRO ALA ASN THR LEU LEU VAL ASN THR GLY SEQRES 23 B 344 ASP LEU GLU THR SER ALA GLU ARG PHE GLN ALA ASP THR SEQRES 24 B 344 LEU ALA ARG PHE GLU ASN ARG GLY VAL ASP PRO MET ARG SEQRES 25 B 344 PRO LEU LEU PRO PRO GLN SER LEU TRP LEU ARG VAL ASP SEQRES 26 B 344 GLU LEU PHE SER GLU LEU LYS ASN ALA ALA ALA LEU GLU SEQRES 27 B 344 HIS HIS HIS HIS HIS HIS HET NA A 345 1 HET P4C A4034 22 HET NA B1001 1 HET SO4 B4849 5 HET NA B4850 1 HET P4C B4035 22 HETNAM NA SODIUM ION HETNAM P4C O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN P4C POLYETHYLENE 400 FORMUL 3 NA 3(NA 1+) FORMUL 4 P4C 2(C14 H28 O8) FORMUL 6 SO4 O4 S 2- FORMUL 9 HOH *433(H2 O) HELIX 1 1 ALA A 26 HIS A 38 1 13 HELIX 2 2 ASP A 48 GLN A 61 1 14 HELIX 3 3 HIS A 84 LEU A 98 1 15 HELIX 4 4 PRO A 99 MET A 101 5 3 HELIX 5 5 VAL A 110 MET A 114 1 5 HELIX 6 6 PRO A 119 ALA A 127 1 9 HELIX 7 7 SER A 137 ALA A 148 1 12 HELIX 8 8 ASP A 220 ASP A 233 1 14 HELIX 9 9 HIS A 243 LYS A 250 1 8 HELIX 10 10 GLY A 256 PHE A 265 5 10 HELIX 11 11 PRO A 271 PHE A 276 5 6 HELIX 12 12 ASP A 287 GLY A 307 1 21 HELIX 13 13 PRO A 316 TRP A 321 1 6 HELIX 14 14 ARG A 323 ASN A 333 1 11 HELIX 15 15 ALA B 26 HIS B 38 1 13 HELIX 16 16 ASP B 48 PHE B 62 1 15 HELIX 17 17 HIS B 84 LEU B 98 1 15 HELIX 18 18 PRO B 99 MET B 101 5 3 HELIX 19 19 VAL B 110 MET B 114 1 5 HELIX 20 20 PRO B 119 ALA B 127 1 9 HELIX 21 21 SER B 137 ALA B 148 1 12 HELIX 22 22 PHE B 185 GLU B 188 5 4 HELIX 23 23 ASP B 220 ASP B 233 1 14 HELIX 24 24 HIS B 243 LYS B 250 1 8 HELIX 25 25 GLY B 256 PHE B 265 5 10 HELIX 26 26 PRO B 271 PHE B 276 5 6 HELIX 27 27 LEU B 288 GLY B 307 1 20 HELIX 28 28 PRO B 316 LEU B 320 5 5 HELIX 29 29 ARG B 323 ASN B 333 1 11 SHEET 1 A 4 VAL A 67 ASN A 69 0 SHEET 2 A 4 VAL A 105 PRO A 109 1 O VAL A 105 N MET A 68 SHEET 3 A 4 VAL A 42 ALA A 46 1 N LEU A 44 O LEU A 106 SHEET 4 A 4 LEU A 281 ASN A 284 1 O LEU A 281 N VAL A 43 SHEET 1 B 2 LEU A 128 LYS A 131 0 SHEET 2 B 2 ALA A 208 LEU A 211 -1 O LEU A 211 N LEU A 128 SHEET 1 C 6 ARG A 151 HIS A 152 0 SHEET 2 C 6 GLU A 161 ARG A 165 1 O TYR A 162 N ARG A 151 SHEET 3 C 6 LEU A 168 LEU A 171 -1 O ASP A 170 N ALA A 163 SHEET 4 C 6 TYR A 180 PHE A 184 -1 O TYR A 180 N LEU A 171 SHEET 5 C 6 ILE A 189 ASP A 196 -1 O ARG A 193 N ARG A 181 SHEET 6 C 6 ARG A 201 VAL A 206 -1 O ARG A 201 N ASP A 196 SHEET 1 D 4 VAL B 67 ASN B 69 0 SHEET 2 D 4 VAL B 105 PRO B 109 1 O VAL B 105 N MET B 68 SHEET 3 D 4 VAL B 42 ALA B 46 1 N LEU B 44 O LEU B 106 SHEET 4 D 4 LEU B 281 ASN B 284 1 O LEU B 281 N VAL B 43 SHEET 1 E 2 LEU B 128 LYS B 131 0 SHEET 2 E 2 ALA B 208 LEU B 211 -1 O LEU B 211 N LEU B 128 SHEET 1 F 6 ARG B 151 HIS B 152 0 SHEET 2 F 6 GLU B 161 ARG B 165 1 O TYR B 162 N ARG B 151 SHEET 3 F 6 LEU B 168 LEU B 171 -1 O ASP B 170 N ALA B 163 SHEET 4 F 6 TYR B 180 ASP B 183 -1 O LEU B 182 N LEU B 169 SHEET 5 F 6 SER B 191 ASP B 196 -1 O ARG B 193 N ARG B 181 SHEET 6 F 6 ARG B 201 GLU B 205 -1 O LEU B 203 N VAL B 194 LINK O SER A 60 NA NA B1001 1555 1555 2.18 LINK O PHE A 62 NA NA A 345 1555 1555 2.33 LINK O THR A 63 NA NA B1001 1555 1555 2.34 LINK NA NA A 345 O1 P4C A4034 1555 1555 2.44 LINK NA NA A 345 O10 P4C A4034 1555 1555 2.58 LINK NA NA A 345 O13 P4C A4034 1555 1555 2.60 LINK NA NA A 345 O4 P4C A4034 1555 1555 2.66 LINK NA NA A 345 O7 P4C A4034 1555 1555 2.67 LINK NA NA A 345 O HOH A4176 1555 1555 2.23 LINK O SER B 60 NA NA B1001 1555 1555 2.32 LINK O PHE B 62 NA NA B4850 1555 1555 2.42 LINK O THR B 63 NA NA B1001 1555 1555 2.31 LINK NA NA B1001 O HOH B4853 1555 1555 2.48 LINK O13 P4C B4035 NA NA B4850 1555 1555 2.78 LINK O10 P4C B4035 NA NA B4850 1555 1555 2.68 LINK O7 P4C B4035 NA NA B4850 1555 1555 2.67 LINK O4 P4C B4035 NA NA B4850 1555 1555 2.92 SITE 1 AC1 5 SER A 60 THR A 63 SER B 60 THR B 63 SITE 2 AC1 5 HOH B4853 SITE 1 AC2 8 ARG A 201 THR A 202 HOH A4150 HOH A4205 SITE 2 AC2 8 ARG B 138 ARG B 142 HIS B 152 THR B 164 SITE 1 AC3 3 PHE A 62 P4C A4034 HOH A4176 SITE 1 AC4 2 PHE B 62 P4C B4035 SITE 1 AC5 10 ALA A 32 GLU A 33 GLU A 36 GLN A 61 SITE 2 AC5 10 PHE A 62 THR A 63 ASP A 64 NA A 345 SITE 3 AC5 10 SER B 60 HOH B4993 SITE 1 AC6 9 SER A 60 ALA B 32 GLU B 33 GLU B 36 SITE 2 AC6 9 GLN B 61 PHE B 62 THR B 63 ASP B 64 SITE 3 AC6 9 NA B4850 CRYST1 112.650 112.650 213.860 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008877 0.005125 0.000000 0.00000 SCALE2 0.000000 0.010250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004676 0.00000