HEADER SIGNALING PROTEIN 19-SEP-05 2B31 TITLE CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN GOAT SIGNALLING TITLE 2 PROTEIN WITH PENTASACCHARIDE AT 3.1 A RESOLUTION REVEALS LARGE SCALE TITLE 3 CONFORMATIONAL CHANGES IN THE RESIDUES OF TIM BARREL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE-3-LIKE PROTEIN 1, SPG-40; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAMMARY GLAND PROTEIN MGP-40, BP40 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAPRA HIRCUS; SOURCE 3 ORGANISM_COMMON: GOAT; SOURCE 4 ORGANISM_TAXID: 9925; SOURCE 5 SECRETION: MAMMARY GLAND KEYWDS SIGNALLING PROTEIN, COMPLEX PENTASACCHARIDE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.ETHAYATHULLA,J.KUMAR,D.B.SRIVASTAVA,N.SINGH,S.SHARMA,A.BHUSHAN, AUTHOR 2 T.P.SINGH REVDAT 5 23-AUG-23 2B31 1 HETSYN REVDAT 4 29-JUL-20 2B31 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2B31 1 VERSN REVDAT 2 24-FEB-09 2B31 1 VERSN REVDAT 1 27-SEP-05 2B31 0 SPRSDE 27-SEP-05 2B31 1ZU9 JRNL AUTH A.S.ETHAYATHULLA,J.KUMAR,D.B.SRIVASTAVA,N.SINGH,S.SHARMA, JRNL AUTH 2 A.BHUSHAN,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN GOAT JRNL TITL 2 SIGNALLING PROTEIN WITH PENTASACCHARIDE AT 3.1 A RESOLUTION JRNL TITL 3 REVEALS LARGE SCALE CONFORMATIONAL CHANGES IN THE RESIDUES JRNL TITL 4 OF TIM BARREL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 8090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.424 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.464 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3057 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2703 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4152 ; 2.440 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6234 ; 2.381 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 2.243 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;22.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3334 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 671 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 744 ; 0.296 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2855 ; 0.268 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 10 ; 0.472 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.233 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 5 ; 0.231 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.311 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 19 ; 0.409 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.258 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1791 ; 1.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2872 ; 3.163 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 3.417 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1280 ; 5.634 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8493 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QZO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM TRIS HCL, 50MM NACL, 19% ETHANOL, REMARK 280 PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0 K, PH REMARK 280 7.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.37250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.90600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.30650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.90600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.37250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.30650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 362 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 191 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 TRP A 191 N - CA - C ANGL. DEV. = 22.2 DEGREES REMARK 500 ARG A 323 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 29 -78.23 -68.86 REMARK 500 PHE A 37 102.64 68.63 REMARK 500 TRP A 48 -57.60 -128.34 REMARK 500 ASN A 51 31.46 -97.86 REMARK 500 LYS A 63 0.47 -67.95 REMARK 500 ASN A 79 27.70 -73.15 REMARK 500 ALA A 117 53.61 -113.87 REMARK 500 TYR A 120 97.45 81.99 REMARK 500 ALA A 146 13.87 -68.83 REMARK 500 ASP A 169 72.84 -112.47 REMARK 500 TYR A 185 -4.27 -157.54 REMARK 500 ALA A 190 -53.43 16.36 REMARK 500 TRP A 191 -131.40 -46.15 REMARK 500 ARG A 192 134.60 -9.44 REMARK 500 ASN A 205 0.29 -27.85 REMARK 500 ASN A 215 150.46 173.20 REMARK 500 PRO A 260 -179.16 -67.43 REMARK 500 LYS A 268 64.02 38.59 REMARK 500 PHE A 290 109.94 -59.19 REMARK 500 LYS A 300 117.06 -162.03 REMARK 500 ALA A 332 102.97 66.79 REMARK 500 GLN A 345 153.34 -36.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A GOAT SIGNALLING PROTEIN SECRETED DURING REMARK 900 INVOLUTION REMARK 900 RELATED ID: 1SYT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SIGNALLING PROTEIN FROM GOAT SPG-40 IN THE REMARK 900 PRESENSE OF N, N', N''-TRIACETYL-CHITOTRIOSE AT 2.6 A RESOLUTION REMARK 900 RELATED ID: 1ZBV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GOAT SIGNALLING PROTEIN (SPG-40) COMPLEXED REMARK 900 WITH A DESIGNED PEPTIDE TRP-PRO-TRP AT 3.2A RESOLUTION REMARK 900 RELATED ID: 2B2P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF SIGNALLING PROTEIN FROM SHEEP REMARK 900 (SPS-40) WITH A PENTASACCHARIDE AT 2.8 A RESOLUTION REMARK 900 RELATED ID: 2B2Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX FORMED BETWEEN GOAT SIGNALLING REMARK 900 PROTEIN AND THE HEXASACCHARIDE AT 2.28 A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE AMINOACID SEQUENCE IN THE REMARK 999 DATABASE IS INCORRECT FOR RESIDUES 54, 152, 226, 227 AND REMARK 999 382. REMARK 999 THE AUTHORS STATE THAT RESIDUE 232 SHOULD BE DELETED FROM REMARK 999 THE SEQUENCE DATABASE REFERENCE. DBREF 2B31 A 1 362 GB 19526603 AAL87007 22 383 SEQADV 2B31 VAL A 33 GB 19526603 ILE 54 SEE REMARK 999 SEQADV 2B31 ALA A 131 GB 19526603 GLY 152 SEE REMARK 999 SEQADV 2B31 ASN A 205 GB 19526603 GLN 226 SEE REMARK 999 SEQADV 2B31 SER A 206 GB 19526603 GLU 227 SEE REMARK 999 SEQADV 2B31 A GB 19526603 ASP 232 SEE REMARK 999 SEQADV 2B31 ARG A 361 GB 19526603 GLU 382 SEE REMARK 999 SEQRES 1 A 361 TYR LYS LEU ILE CYS TYR TYR THR SER TRP SER GLN TYR SEQRES 2 A 361 ARG GLU GLY ASP GLY SER CYS PHE PRO ASP ALA ILE ASP SEQRES 3 A 361 PRO PHE LEU CYS THR HIS VAL ILE TYR SER PHE ALA ASN SEQRES 4 A 361 ILE SER ASN ASN GLU ILE ASP THR TRP GLU TRP ASN ASP SEQRES 5 A 361 VAL THR LEU TYR ASP THR LEU ASN THR LEU LYS ASN ARG SEQRES 6 A 361 ASN PRO LYS LEU LYS THR LEU LEU SER VAL GLY GLY TRP SEQRES 7 A 361 ASN PHE GLY PRO GLU ARG PHE SER LYS ILE ALA SER LYS SEQRES 8 A 361 THR GLN SER ARG ARG THR PHE ILE LYS SER VAL PRO PRO SEQRES 9 A 361 PHE LEU ARG THR HIS GLY PHE ASP GLY LEU ASP LEU ALA SEQRES 10 A 361 TRP LEU TYR PRO GLY ARG ARG ASP LYS ARG HIS LEU THR SEQRES 11 A 361 ALA LEU VAL LYS GLU MET LYS ALA GLU PHE ALA ARG GLU SEQRES 12 A 361 ALA GLN ALA GLY THR GLU ARG LEU LEU LEU SER ALA ALA SEQRES 13 A 361 VAL SER ALA GLY LYS ILE ALA ILE ASP ARG GLY TYR ASP SEQRES 14 A 361 ILE ALA GLN ILE SER ARG HIS LEU ASP PHE ILE SER LEU SEQRES 15 A 361 LEU THR TYR ASP PHE HIS GLY ALA TRP ARG GLN THR VAL SEQRES 16 A 361 GLY HIS HIS SER PRO LEU PHE ARG GLY ASN SER ASP ALA SEQRES 17 A 361 SER SER ARG PHE SER ASN ALA ASP TYR ALA VAL SER TYR SEQRES 18 A 361 MET LEU ARG LEU GLY ALA PRO ALA ASN LYS LEU VAL MET SEQRES 19 A 361 GLY ILE PRO THR PHE GLY ARG SER PHE THR LEU ALA SER SEQRES 20 A 361 SER LYS THR ASP VAL GLY ALA PRO ILE SER GLY PRO GLY SEQRES 21 A 361 ILE PRO GLY ARG PHE THR LYS GLU LYS GLY ILE LEU ALA SEQRES 22 A 361 TYR TYR GLU ILE CYS ASP PHE LEU HIS GLY ALA THR THR SEQRES 23 A 361 HIS ARG PHE ARG ASP GLN GLN VAL PRO TYR ALA THR LYS SEQRES 24 A 361 GLY ASN GLN TRP VAL ALA TYR ASP ASP GLN GLU SER VAL SEQRES 25 A 361 LYS ASN LYS ALA ARG TYR LEU LYS ASN ARG GLN LEU ALA SEQRES 26 A 361 GLY ALA MET VAL TRP ALA LEU ASP LEU ASP ASP PHE ARG SEQRES 27 A 361 GLY THR PHE CYS GLY GLN ASN LEU THR PHE PRO LEU THR SEQRES 28 A 361 SER ALA VAL LYS ASP VAL LEU ALA ARG VAL MODRES 2B31 ASN A 39 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NDG B 2 14 HET NAG B 3 14 HET NAG B 4 14 HET NAG B 5 14 HET NAG C 1 14 HET NDG C 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 NDG 2(C8 H15 N O6) FORMUL 4 HOH *71(H2 O) HELIX 1 1 TRP A 10 ARG A 14 5 5 HELIX 2 2 GLU A 15 SER A 19 5 5 HELIX 3 3 PHE A 21 ILE A 25 5 5 HELIX 4 4 ASN A 51 ASN A 60 1 10 HELIX 5 5 THR A 61 ARG A 65 5 5 HELIX 6 6 GLY A 81 SER A 90 1 10 HELIX 7 7 LYS A 91 HIS A 109 1 19 HELIX 8 8 GLY A 122 ARG A 124 5 3 HELIX 9 9 ASP A 125 ALA A 144 1 20 HELIX 10 10 GLN A 145 GLY A 147 5 3 HELIX 11 11 GLY A 160 TYR A 168 1 9 HELIX 12 12 ASP A 169 LEU A 177 1 9 HELIX 13 13 ASN A 215 GLY A 227 1 13 HELIX 14 14 PRO A 229 ASN A 231 5 3 HELIX 15 15 TYR A 275 LEU A 282 1 8 HELIX 16 16 ASP A 309 ARG A 323 1 15 HELIX 17 17 PHE A 349 ALA A 360 1 12 SHEET 1 A10 GLU A 44 ASP A 46 0 SHEET 2 A10 HIS A 32 SER A 41 -1 N ASN A 39 O ASP A 46 SHEET 3 A10 LYS A 70 GLY A 76 1 O SER A 74 N ALA A 38 SHEET 4 A10 GLY A 113 ALA A 117 1 O ASP A 115 N VAL A 75 SHEET 5 A10 LEU A 152 VAL A 157 1 O ALA A 156 N LEU A 116 SHEET 6 A10 PHE A 179 LEU A 182 1 O SER A 181 N ALA A 155 SHEET 7 A10 LEU A 233 PRO A 238 1 O VAL A 234 N LEU A 182 SHEET 8 A10 GLY A 327 TRP A 331 1 O MET A 329 N ILE A 237 SHEET 9 A10 LYS A 2 THR A 8 1 N ILE A 4 O VAL A 330 SHEET 10 A10 HIS A 32 SER A 41 1 O HIS A 32 N CYS A 5 SHEET 1 B 3 ILE A 257 PRO A 260 0 SHEET 2 B 3 PHE A 240 LEU A 246 -1 N THR A 245 O SER A 258 SHEET 3 B 3 ILE A 272 ALA A 274 -1 O LEU A 273 N GLY A 241 SHEET 1 C 5 ILE A 257 PRO A 260 0 SHEET 2 C 5 PHE A 240 LEU A 246 -1 N THR A 245 O SER A 258 SHEET 3 C 5 GLN A 303 ALA A 306 -1 O ALA A 306 N ARG A 242 SHEET 4 C 5 VAL A 295 LYS A 300 -1 N ALA A 298 O VAL A 305 SHEET 5 C 5 THR A 286 PHE A 290 -1 N THR A 286 O THR A 299 SSBOND 1 CYS A 5 CYS A 30 1555 1555 1.97 SSBOND 2 CYS A 279 CYS A 343 1555 1555 2.00 LINK ND2 ASN A 39 C1 NAG C 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NDG B 2 1555 1555 1.49 LINK O4 NDG B 2 C1 NAG B 3 1555 1555 1.41 LINK O4 NAG B 3 C1 NAG B 4 1555 1555 1.55 LINK O4 NAG B 4 C1 NAG B 5 1555 1555 1.41 LINK O4 NAG C 1 C1 NDG C 2 1555 1555 1.48 CRYST1 62.745 66.613 107.812 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009275 0.00000