HEADER ELECTRON TRANSPORT 11-DEC-98 2B3I TITLE NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC TITLE 2 PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PLASTOCYANIN); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PETE PROTEIN; COMPND 5 EC: 1.10.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: T2S MUTATION INTRODUCED TO CLONE IN EXPRESSION VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLOROTHRIX HOLLANDICA; SOURCE 3 ORGANISM_TAXID: 1223; SOURCE 4 CELLULAR_LOCATION: THYLAKOID LUMEN; SOURCE 5 GENE: PETE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM - INCLUSION BODIES; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PSCREEN; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PVAPC10; SOURCE 13 EXPRESSION_SYSTEM_GENE: PETE; SOURCE 14 OTHER_DETAILS: INCLUSION BODIES WERE REFOLDED IN-VITRO KEYWDS ELECTRON TRANSPORT, TYPE I COPPER PROTEIN, PHOTOSYNTHESIS EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR C.R.BABU,B.F.VOLKMAN,G.S.BULLERJAHN REVDAT 5 27-DEC-23 2B3I 1 REMARK REVDAT 4 09-MAR-22 2B3I 1 REMARK LINK REVDAT 3 24-FEB-09 2B3I 1 VERSN REVDAT 2 19-MAY-00 2B3I 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 LINK CISPEP REVDAT 1 27-APR-99 2B3I 0 JRNL AUTH C.R.BABU,B.F.VOLKMAN,G.S.BULLERJAHN JRNL TITL NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE JRNL TITL 2 PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA. JRNL REF BIOCHEMISTRY V. 38 4988 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10213601 JRNL DOI 10.1021/BI983024F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : P.GUNTERT, C.MUMENTHALER, K.WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS, RESTRAINTS, AND REMARK 3 CHEMICAL SHIFTS ARE IN THE SUBMITTED FILES AND IN THE JRNL REMARK 3 CITATION ABOVE. REMARK 4 REMARK 4 2B3I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-99. REMARK 100 THE DEPOSITION ID IS D_1000000258. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, FELIX REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TWO-DIMENCIONAL NMR REMARK 210 SPECTROSCOPY. WATER SUPPRESSION WAS ACHIEVED WITH A WATERGATE REMARK 210 SEQ. WITH A 3-9-19 SELECTIVE INVERSION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 23 H GLU A 97 1.57 REMARK 500 O TYR A 78 H ILE A 94 1.57 REMARK 500 H TYR A 78 O ILE A 94 1.59 REMARK 500 HA SER A 24 OXT GLU A 97 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 93.07 62.49 REMARK 500 1 LYS A 11 37.27 -90.78 REMARK 500 1 TYR A 12 29.15 38.98 REMARK 500 1 LYS A 19 -39.73 -39.59 REMARK 500 1 ASN A 40 -173.20 -175.41 REMARK 500 1 LYS A 45 146.05 167.24 REMARK 500 1 ALA A 48 134.85 -39.91 REMARK 500 1 ALA A 54 -48.60 -159.09 REMARK 500 1 ASN A 57 108.10 -160.57 REMARK 500 1 PHE A 67 -76.35 -37.51 REMARK 500 1 HIS A 85 67.96 -107.45 REMARK 500 1 MET A 90 77.87 -115.95 REMARK 500 2 LYS A 11 40.07 -90.41 REMARK 500 2 TYR A 12 28.29 40.24 REMARK 500 2 LYS A 35 -167.19 -171.19 REMARK 500 2 PRO A 38 -169.02 -75.03 REMARK 500 2 ASN A 40 167.40 171.84 REMARK 500 2 PHE A 43 157.81 -37.95 REMARK 500 2 LYS A 45 149.33 167.51 REMARK 500 2 ALA A 48 134.86 -39.26 REMARK 500 2 ALA A 54 -45.10 -159.43 REMARK 500 2 SER A 56 94.51 -56.47 REMARK 500 2 THR A 58 35.65 -90.28 REMARK 500 2 LEU A 60 103.74 -49.64 REMARK 500 2 SER A 66 89.92 55.21 REMARK 500 2 PHE A 67 -83.32 -37.49 REMARK 500 3 SER A 2 90.20 49.04 REMARK 500 3 LYS A 11 39.79 -90.74 REMARK 500 3 TYR A 12 29.96 38.11 REMARK 500 3 LYS A 35 -166.81 -169.03 REMARK 500 3 ASN A 40 169.70 169.61 REMARK 500 3 PHE A 43 159.58 -39.10 REMARK 500 3 LYS A 45 149.69 167.58 REMARK 500 3 ALA A 48 134.48 -38.91 REMARK 500 3 ALA A 54 -45.64 -155.41 REMARK 500 3 THR A 58 30.66 -91.08 REMARK 500 3 PHE A 67 -73.16 -37.14 REMARK 500 3 TYR A 68 173.50 173.42 REMARK 500 4 SER A 2 111.08 58.55 REMARK 500 4 LYS A 11 40.65 -90.18 REMARK 500 4 TYR A 12 29.67 38.35 REMARK 500 4 ALA A 25 106.01 -59.61 REMARK 500 4 PRO A 38 -169.19 -75.00 REMARK 500 4 ASN A 40 163.12 179.37 REMARK 500 4 LYS A 45 147.15 167.83 REMARK 500 4 ALA A 48 132.43 -39.83 REMARK 500 4 ALA A 54 -45.57 -157.90 REMARK 500 4 LYS A 59 95.18 -47.06 REMARK 500 4 LEU A 60 96.48 -67.53 REMARK 500 4 ALA A 63 100.05 -39.66 REMARK 500 REMARK 500 THIS ENTRY HAS 268 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 110 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 CYS A 82 SG 112.5 REMARK 620 3 HIS A 85 ND1 115.6 111.0 REMARK 620 4 MET A 90 SD 106.6 104.5 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CU REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: COPPER BINDING SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 110 REMARK 999 REMARK 999 SEQUENCE REMARK 999 T2S - INTRODUCED TO CLONE, R61A - MISTAKE IN GB ENTRY DBREF 2B3I A 1 97 UNP P50057 PLAS_PROHO 35 131 SEQADV 2B3I SER A 2 UNP P50057 THR 36 SEE REMARK 999 SEQADV 2B3I ALA A 61 UNP P50057 ARG 95 SEE REMARK 999 SEQRES 1 A 97 ALA SER VAL GLN ILE LYS MET GLY THR ASP LYS TYR ALA SEQRES 2 A 97 PRO LEU TYR GLU PRO LYS ALA LEU SER ILE SER ALA GLY SEQRES 3 A 97 ASP THR VAL GLU PHE VAL MET ASN LYS VAL GLY PRO HIS SEQRES 4 A 97 ASN VAL ILE PHE ASP LYS VAL PRO ALA GLY GLU SER ALA SEQRES 5 A 97 PRO ALA LEU SER ASN THR LYS LEU ALA ILE ALA PRO GLY SEQRES 6 A 97 SER PHE TYR SER VAL THR LEU GLY THR PRO GLY THR TYR SEQRES 7 A 97 SER PHE TYR CYS THR PRO HIS ARG GLY ALA GLY MET VAL SEQRES 8 A 97 GLY THR ILE THR VAL GLU HET CU1 A 110 1 HETNAM CU1 COPPER (I) ION FORMUL 2 CU1 CU 1+ HELIX 1 1 ALA A 52 LEU A 55 1 4 SHEET 1 A 3 VAL A 3 MET A 7 0 SHEET 2 A 3 THR A 28 MET A 33 1 N GLU A 30 O VAL A 3 SHEET 3 A 3 TYR A 68 THR A 71 -1 N VAL A 70 O VAL A 29 SHEET 1 B 4 ALA A 20 ILE A 23 0 SHEET 2 B 4 VAL A 91 VAL A 96 1 N THR A 93 O LEU A 21 SHEET 3 B 4 GLY A 76 TYR A 81 -1 N PHE A 80 O GLY A 92 SHEET 4 B 4 ILE A 42 LYS A 45 -1 N LYS A 45 O SER A 79 LINK ND1 HIS A 39 CU CU1 A 110 1555 1555 1.99 LINK SG CYS A 82 CU CU1 A 110 1555 1555 2.36 LINK ND1 HIS A 85 CU CU1 A 110 1555 1555 2.03 LINK SD MET A 90 CU CU1 A 110 1555 1555 2.95 CISPEP 1 GLU A 17 PRO A 18 1 0.02 CISPEP 2 GLY A 37 PRO A 38 1 -0.08 CISPEP 3 GLU A 17 PRO A 18 2 -0.02 CISPEP 4 GLY A 37 PRO A 38 2 0.00 CISPEP 5 GLU A 17 PRO A 18 3 0.03 CISPEP 6 GLY A 37 PRO A 38 3 -0.03 CISPEP 7 GLU A 17 PRO A 18 4 -0.09 CISPEP 8 GLY A 37 PRO A 38 4 -0.01 CISPEP 9 GLU A 17 PRO A 18 5 -0.03 CISPEP 10 GLY A 37 PRO A 38 5 0.12 CISPEP 11 GLU A 17 PRO A 18 6 0.03 CISPEP 12 GLY A 37 PRO A 38 6 0.06 CISPEP 13 GLU A 17 PRO A 18 7 0.06 CISPEP 14 GLY A 37 PRO A 38 7 0.04 CISPEP 15 GLU A 17 PRO A 18 8 -0.04 CISPEP 16 GLY A 37 PRO A 38 8 -0.11 CISPEP 17 GLU A 17 PRO A 18 9 -0.14 CISPEP 18 GLY A 37 PRO A 38 9 0.11 CISPEP 19 GLU A 17 PRO A 18 10 -0.10 CISPEP 20 GLY A 37 PRO A 38 10 -0.13 CISPEP 21 GLU A 17 PRO A 18 11 -0.09 CISPEP 22 GLY A 37 PRO A 38 11 -0.05 CISPEP 23 GLU A 17 PRO A 18 12 -0.02 CISPEP 24 GLY A 37 PRO A 38 12 -0.04 CISPEP 25 GLU A 17 PRO A 18 13 0.05 CISPEP 26 GLY A 37 PRO A 38 13 0.02 CISPEP 27 GLU A 17 PRO A 18 14 -0.01 CISPEP 28 GLY A 37 PRO A 38 14 -0.11 CISPEP 29 GLU A 17 PRO A 18 15 -0.01 CISPEP 30 GLY A 37 PRO A 38 15 0.00 CISPEP 31 GLU A 17 PRO A 18 16 0.01 CISPEP 32 GLY A 37 PRO A 38 16 0.03 CISPEP 33 GLU A 17 PRO A 18 17 0.04 CISPEP 34 GLY A 37 PRO A 38 17 0.00 CISPEP 35 GLU A 17 PRO A 18 18 0.06 CISPEP 36 GLY A 37 PRO A 38 18 -0.07 CISPEP 37 GLU A 17 PRO A 18 19 0.02 CISPEP 38 GLY A 37 PRO A 38 19 0.00 SITE 1 CU 4 HIS A 39 CYS A 82 HIS A 85 MET A 90 SITE 1 AC1 4 HIS A 39 CYS A 82 HIS A 85 MET A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1