HEADER HYDROLASE/RNA 20-SEP-05 2B3J TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE, TITLE 2 TADA, IN COMPLEX WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTICODON STEM-LOOP OF T-RNA-ARG2 (NUCLEOTIDES 27-42); COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRNA ADENOSINE DEAMINASE; COMPND 7 CHAIN: A, B, C, D; COMPND 8 SYNONYM: SIMILAR TO CYTOSINE DEAMINASE, TADA; COMPND 9 EC: 3.5.4.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE IS DERIVED FROM S. AUREUS T-RNA-ARG2 SOURCE 4 NUCLEOTIDES 27-42; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 7 ORGANISM_TAXID: 158878; SOURCE 8 STRAIN: SUBSP. AUREUS MU50; SOURCE 9 GENE: TADA; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MIXED ALPHA-BETA, PROTEIN-RNA COMPLEX, RNA STEM-LOOP, HYDROLASE-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE REVDAT 6 14-FEB-24 2B3J 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 2B3J 1 VERSN REVDAT 4 21-JUL-09 2B3J 1 HETATM HET DBREF SEQADV REVDAT 3 24-FEB-09 2B3J 1 VERSN REVDAT 2 28-FEB-06 2B3J 1 JRNL REVDAT 1 24-JAN-06 2B3J 0 JRNL AUTH H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE JRNL TITL 2 DEAMINASE TADA IN COMPLEX WITH RNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 153 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16415880 JRNL DOI 10.1038/NSMB1047 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 312656.940 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 56045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2836 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8091 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 430 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4529 REMARK 3 NUCLEIC ACID ATOMS : 1134 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.57000 REMARK 3 B22 (A**2) : -8.78000 REMARK 3 B33 (A**2) : -4.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.080 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 50.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP+PUR.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : GOL_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA+PUR.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : GOL_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-05; 20-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 0.9794,0.9798,0.95 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111); DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR SI(111) REMARK 200 OPTICS : BEAM FOCUSED BY A TOROIDAL REMARK 200 MIRROR; BEAM FOCUSED BY A REMARK 200 TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : 0.47800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, AMMONIUM REMARK 280 ACETATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.52750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.56650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.51450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.56650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.52750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.51450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U E 27 REMARK 465 U F 27 REMARK 465 U G 27 REMARK 465 U G 28 REMARK 465 U G 29 REMARK 465 A G 38 REMARK 465 U G 39 REMARK 465 C G 40 REMARK 465 A G 41 REMARK 465 A G 42 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 152 REMARK 465 LYS A 153 REMARK 465 SER A 154 REMARK 465 THR A 155 REMARK 465 ASN A 156 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 152 REMARK 465 LYS B 153 REMARK 465 SER B 154 REMARK 465 THR B 155 REMARK 465 ASN B 156 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 LYS C 153 REMARK 465 SER C 154 REMARK 465 THR C 155 REMARK 465 ASN C 156 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 LYS D 153 REMARK 465 SER D 154 REMARK 465 THR D 155 REMARK 465 ASN D 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U E 28 P OP1 OP2 REMARK 470 U F 28 P OP1 OP2 REMARK 470 G G 30 P OP1 OP2 REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 THR A 142 OG1 CG2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 ILE B 30 CD1 REMARK 470 ASP B 34 CG OD1 OD2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 ASN B 151 CG OD1 ND2 REMARK 470 GLN C 20 CG CD OE1 NE2 REMARK 470 ASP C 34 CG OD1 OD2 REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 GLU C 135 CG CD OE1 OE2 REMARK 470 LYS C 146 CG CD CE NZ REMARK 470 ASN D 3 CG OD1 ND2 REMARK 470 ILE D 5 CG1 CG2 CD1 REMARK 470 ILE D 12 CG1 CG2 CD1 REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 LEU D 133 CG CD1 CD2 REMARK 470 LYS D 134 CG CD CE NZ REMARK 470 GLU D 135 CG CD OE1 OE2 REMARK 470 LYS D 146 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G F 37 C2' - C3' - O3' ANGL. DEV. = 14.5 DEGREES REMARK 500 G G 37 C2' - C3' - O3' ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 25 83.36 -65.35 REMARK 500 LEU A 43 21.43 -142.58 REMARK 500 ALA A 52 33.36 -69.78 REMARK 500 SER A 112 -73.78 -76.97 REMARK 500 PRO B 25 81.25 -63.32 REMARK 500 LEU B 43 18.88 -140.01 REMARK 500 ALA B 52 34.33 -69.33 REMARK 500 LEU B 71 57.80 -91.56 REMARK 500 SER B 112 -80.59 -79.51 REMARK 500 VAL B 132 107.58 -54.09 REMARK 500 PRO C 25 92.39 -66.22 REMARK 500 LEU C 43 23.65 -147.10 REMARK 500 ALA C 52 48.57 -67.48 REMARK 500 SER C 112 -75.10 -81.24 REMARK 500 PRO D 25 87.81 -57.37 REMARK 500 ASP D 34 26.28 49.52 REMARK 500 ALA D 38 140.92 -173.59 REMARK 500 LEU D 43 17.84 -144.66 REMARK 500 ALA D 52 35.38 -69.65 REMARK 500 SER D 112 -75.88 -81.14 REMARK 500 GLN D 118 53.72 -141.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 ND1 REMARK 620 2 CYS A 83 SG 104.3 REMARK 620 3 CYS A 86 SG 115.2 117.0 REMARK 620 4 HOH A2002 O 107.1 102.2 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 53 ND1 REMARK 620 2 CYS B 83 SG 103.3 REMARK 620 3 CYS B 86 SG 118.7 116.5 REMARK 620 4 HOH B2003 O 104.5 104.2 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 53 ND1 REMARK 620 2 CYS C 83 SG 103.7 REMARK 620 3 CYS C 86 SG 111.2 119.3 REMARK 620 4 HOH C2004 O 117.4 101.6 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D2004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 53 ND1 REMARK 620 2 CYS D 83 SG 103.7 REMARK 620 3 CYS D 86 SG 117.6 117.7 REMARK 620 4 HOH D2005 O 107.3 106.6 103.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1003 DBREF 2B3J A 1 156 UNP Q99W51 Q99W51_STAAM 1 156 DBREF 2B3J B 1 156 UNP Q99W51 Q99W51_STAAM 1 156 DBREF 2B3J C 1 156 UNP Q99W51 Q99W51_STAAM 1 156 DBREF 2B3J D 1 156 UNP Q99W51 Q99W51_STAAM 1 156 DBREF 2B3J E 27 42 PDB 2B3J 2B3J 27 42 DBREF 2B3J F 27 42 PDB 2B3J 2B3J 27 42 DBREF 2B3J G 27 42 PDB 2B3J 2B3J 27 42 DBREF 2B3J H 27 42 PDB 2B3J 2B3J 27 42 SEQADV 2B3J GLY A -2 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J SER A -1 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J HIS A 0 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J GLY B -2 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J SER B -1 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J HIS B 0 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J GLY C -2 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J SER C -1 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J HIS C 0 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J GLY D -2 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J SER D -1 UNP Q99W51 EXPRESSION TAG SEQADV 2B3J HIS D 0 UNP Q99W51 EXPRESSION TAG SEQRES 1 E 16 U U U G A C U P5P C G G A U SEQRES 2 E 16 C A A SEQRES 1 F 16 U U U G A C U P5P C G G A U SEQRES 2 F 16 C A A SEQRES 1 G 16 U U U G A C U P5P C G G A U SEQRES 2 G 16 C A A SEQRES 1 H 16 U U U G A C U P5P C G G A U SEQRES 2 H 16 C A A SEQRES 1 A 159 GLY SER HIS MET THR ASN ASP ILE TYR PHE MET THR LEU SEQRES 2 A 159 ALA ILE GLU GLU ALA LYS LYS ALA ALA GLN LEU GLY GLU SEQRES 3 A 159 VAL PRO ILE GLY ALA ILE ILE THR LYS ASP ASP GLU VAL SEQRES 4 A 159 ILE ALA ARG ALA HIS ASN LEU ARG GLU THR LEU GLN GLN SEQRES 5 A 159 PRO THR ALA HIS ALA GLU HIS ILE ALA ILE GLU ARG ALA SEQRES 6 A 159 ALA LYS VAL LEU GLY SER TRP ARG LEU GLU GLY CYS THR SEQRES 7 A 159 LEU TYR VAL THR LEU GLU PRO CYS VAL MET CYS ALA GLY SEQRES 8 A 159 THR ILE VAL MET SER ARG ILE PRO ARG VAL VAL TYR GLY SEQRES 9 A 159 ALA ASP ASP PRO LYS GLY GLY CYS SER GLY SER LEU MET SEQRES 10 A 159 ASN LEU LEU GLN GLN SER ASN PHE ASN HIS ARG ALA ILE SEQRES 11 A 159 VAL ASP LYS GLY VAL LEU LYS GLU ALA CYS SER THR LEU SEQRES 12 A 159 LEU THR THR PHE PHE LYS ASN LEU ARG ALA ASN LYS LYS SEQRES 13 A 159 SER THR ASN SEQRES 1 B 159 GLY SER HIS MET THR ASN ASP ILE TYR PHE MET THR LEU SEQRES 2 B 159 ALA ILE GLU GLU ALA LYS LYS ALA ALA GLN LEU GLY GLU SEQRES 3 B 159 VAL PRO ILE GLY ALA ILE ILE THR LYS ASP ASP GLU VAL SEQRES 4 B 159 ILE ALA ARG ALA HIS ASN LEU ARG GLU THR LEU GLN GLN SEQRES 5 B 159 PRO THR ALA HIS ALA GLU HIS ILE ALA ILE GLU ARG ALA SEQRES 6 B 159 ALA LYS VAL LEU GLY SER TRP ARG LEU GLU GLY CYS THR SEQRES 7 B 159 LEU TYR VAL THR LEU GLU PRO CYS VAL MET CYS ALA GLY SEQRES 8 B 159 THR ILE VAL MET SER ARG ILE PRO ARG VAL VAL TYR GLY SEQRES 9 B 159 ALA ASP ASP PRO LYS GLY GLY CYS SER GLY SER LEU MET SEQRES 10 B 159 ASN LEU LEU GLN GLN SER ASN PHE ASN HIS ARG ALA ILE SEQRES 11 B 159 VAL ASP LYS GLY VAL LEU LYS GLU ALA CYS SER THR LEU SEQRES 12 B 159 LEU THR THR PHE PHE LYS ASN LEU ARG ALA ASN LYS LYS SEQRES 13 B 159 SER THR ASN SEQRES 1 C 159 GLY SER HIS MET THR ASN ASP ILE TYR PHE MET THR LEU SEQRES 2 C 159 ALA ILE GLU GLU ALA LYS LYS ALA ALA GLN LEU GLY GLU SEQRES 3 C 159 VAL PRO ILE GLY ALA ILE ILE THR LYS ASP ASP GLU VAL SEQRES 4 C 159 ILE ALA ARG ALA HIS ASN LEU ARG GLU THR LEU GLN GLN SEQRES 5 C 159 PRO THR ALA HIS ALA GLU HIS ILE ALA ILE GLU ARG ALA SEQRES 6 C 159 ALA LYS VAL LEU GLY SER TRP ARG LEU GLU GLY CYS THR SEQRES 7 C 159 LEU TYR VAL THR LEU GLU PRO CYS VAL MET CYS ALA GLY SEQRES 8 C 159 THR ILE VAL MET SER ARG ILE PRO ARG VAL VAL TYR GLY SEQRES 9 C 159 ALA ASP ASP PRO LYS GLY GLY CYS SER GLY SER LEU MET SEQRES 10 C 159 ASN LEU LEU GLN GLN SER ASN PHE ASN HIS ARG ALA ILE SEQRES 11 C 159 VAL ASP LYS GLY VAL LEU LYS GLU ALA CYS SER THR LEU SEQRES 12 C 159 LEU THR THR PHE PHE LYS ASN LEU ARG ALA ASN LYS LYS SEQRES 13 C 159 SER THR ASN SEQRES 1 D 159 GLY SER HIS MET THR ASN ASP ILE TYR PHE MET THR LEU SEQRES 2 D 159 ALA ILE GLU GLU ALA LYS LYS ALA ALA GLN LEU GLY GLU SEQRES 3 D 159 VAL PRO ILE GLY ALA ILE ILE THR LYS ASP ASP GLU VAL SEQRES 4 D 159 ILE ALA ARG ALA HIS ASN LEU ARG GLU THR LEU GLN GLN SEQRES 5 D 159 PRO THR ALA HIS ALA GLU HIS ILE ALA ILE GLU ARG ALA SEQRES 6 D 159 ALA LYS VAL LEU GLY SER TRP ARG LEU GLU GLY CYS THR SEQRES 7 D 159 LEU TYR VAL THR LEU GLU PRO CYS VAL MET CYS ALA GLY SEQRES 8 D 159 THR ILE VAL MET SER ARG ILE PRO ARG VAL VAL TYR GLY SEQRES 9 D 159 ALA ASP ASP PRO LYS GLY GLY CYS SER GLY SER LEU MET SEQRES 10 D 159 ASN LEU LEU GLN GLN SER ASN PHE ASN HIS ARG ALA ILE SEQRES 11 D 159 VAL ASP LYS GLY VAL LEU LYS GLU ALA CYS SER THR LEU SEQRES 12 D 159 LEU THR THR PHE PHE LYS ASN LEU ARG ALA ASN LYS LYS SEQRES 13 D 159 SER THR ASN MODRES 2B3J P5P E 34 A PURINE RIBOSIDE-5'-MONOPHOSPHATE MODRES 2B3J P5P F 34 A PURINE RIBOSIDE-5'-MONOPHOSPHATE MODRES 2B3J P5P G 34 A PURINE RIBOSIDE-5'-MONOPHOSPHATE MODRES 2B3J P5P H 34 A PURINE RIBOSIDE-5'-MONOPHOSPHATE HET P5P E 34 21 HET P5P F 34 21 HET P5P G 34 21 HET P5P H 34 21 HET ZN A2001 1 HET GOL A1001 6 HET ZN B2002 1 HET GOL B1002 6 HET ZN C2003 1 HET GOL C1004 6 HET ZN D2004 1 HET GOL D1003 6 HETNAM P5P PURINE RIBOSIDE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 P5P 4(C10 H13 N4 O7 P) FORMUL 9 ZN 4(ZN 2+) FORMUL 10 GOL 4(C3 H8 O3) FORMUL 17 HOH *300(H2 O) HELIX 1 1 MET A 1 LEU A 21 1 21 HELIX 2 2 LEU A 43 GLN A 48 1 6 HELIX 3 3 HIS A 53 GLY A 67 1 15 HELIX 4 4 CYS A 83 SER A 93 1 11 HELIX 5 5 LEU A 133 ASN A 151 1 19 HELIX 6 6 THR B 2 LEU B 21 1 20 HELIX 7 7 LEU B 43 GLN B 48 1 6 HELIX 8 8 HIS B 53 GLY B 67 1 15 HELIX 9 9 CYS B 83 SER B 93 1 11 HELIX 10 10 LEU B 133 ASN B 151 1 19 HELIX 11 11 MET C 1 LEU C 21 1 21 HELIX 12 12 LEU C 43 GLN C 48 1 6 HELIX 13 13 HIS C 53 GLY C 67 1 15 HELIX 14 14 CYS C 83 SER C 93 1 11 HELIX 15 15 ASN C 115 GLN C 119 5 5 HELIX 16 16 LEU C 133 ASN C 151 1 19 HELIX 17 17 ASN D 3 GLN D 20 1 18 HELIX 18 18 LEU D 43 GLN D 48 1 6 HELIX 19 19 HIS D 53 GLY D 67 1 15 HELIX 20 20 CYS D 83 ARG D 94 1 12 HELIX 21 21 ASN D 115 GLN D 119 5 5 HELIX 22 22 LEU D 133 LYS D 152 1 20 SHEET 1 A 5 GLU A 35 HIS A 41 0 SHEET 2 A 5 GLY A 27 LYS A 32 -1 N ILE A 30 O ALA A 38 SHEET 3 A 5 CYS A 74 LEU A 80 -1 O TYR A 77 N ILE A 29 SHEET 4 A 5 ARG A 97 ALA A 102 1 O VAL A 99 N LEU A 76 SHEET 5 A 5 ILE A 127 ASP A 129 1 O ILE A 127 N VAL A 98 SHEET 1 B 5 VAL B 36 HIS B 41 0 SHEET 2 B 5 GLY B 27 LYS B 32 -1 N ILE B 30 O ILE B 37 SHEET 3 B 5 CYS B 74 LEU B 80 -1 O TYR B 77 N ILE B 29 SHEET 4 B 5 ARG B 97 ALA B 102 1 O VAL B 99 N LEU B 76 SHEET 5 B 5 ILE B 127 ASP B 129 1 O ASP B 129 N VAL B 98 SHEET 1 C 5 GLU C 35 HIS C 41 0 SHEET 2 C 5 GLY C 27 LYS C 32 -1 N ALA C 28 O ALA C 40 SHEET 3 C 5 CYS C 74 LEU C 80 -1 O TYR C 77 N ILE C 29 SHEET 4 C 5 ARG C 97 ALA C 102 1 O VAL C 99 N LEU C 76 SHEET 5 C 5 ILE C 127 LYS C 130 1 O ILE C 127 N VAL C 98 SHEET 1 D 5 GLU D 35 HIS D 41 0 SHEET 2 D 5 GLY D 27 LYS D 32 -1 N ILE D 30 O ALA D 38 SHEET 3 D 5 THR D 75 LEU D 80 -1 O TYR D 77 N ILE D 29 SHEET 4 D 5 ARG D 97 ALA D 102 1 O VAL D 99 N LEU D 76 SHEET 5 D 5 ILE D 127 ASP D 129 1 O ILE D 127 N VAL D 98 LINK O3' U E 33 P P5P E 34 1555 1555 1.61 LINK O3' P5P E 34 P C E 35 1555 1555 1.60 LINK O3' U F 33 P P5P F 34 1555 1555 1.60 LINK O3' P5P F 34 P C F 35 1555 1555 1.60 LINK O3' U G 33 P P5P G 34 1555 1555 1.61 LINK O3' P5P G 34 P C G 35 1555 1555 1.60 LINK O3' U H 33 P P5P H 34 1555 1555 1.61 LINK O3' P5P H 34 P C H 35 1555 1555 1.60 LINK ND1 HIS A 53 ZN ZN A2001 1555 1555 2.19 LINK SG CYS A 83 ZN ZN A2001 1555 1555 2.40 LINK SG CYS A 86 ZN ZN A2001 1555 1555 2.32 LINK ZN ZN A2001 O HOH A2002 1555 1555 2.11 LINK ND1 HIS B 53 ZN ZN B2002 1555 1555 2.21 LINK SG CYS B 83 ZN ZN B2002 1555 1555 2.40 LINK SG CYS B 86 ZN ZN B2002 1555 1555 2.28 LINK ZN ZN B2002 O HOH B2003 1555 1555 2.14 LINK ND1 HIS C 53 ZN ZN C2003 1555 1555 2.23 LINK SG CYS C 83 ZN ZN C2003 1555 1555 2.39 LINK SG CYS C 86 ZN ZN C2003 1555 1555 2.40 LINK ZN ZN C2003 O HOH C2004 1555 1555 2.02 LINK ND1 HIS D 53 ZN ZN D2004 1555 1555 2.17 LINK SG CYS D 83 ZN ZN D2004 1555 1555 2.37 LINK SG CYS D 86 ZN ZN D2004 1555 1555 2.31 LINK ZN ZN D2004 O HOH D2005 1555 1555 2.16 SITE 1 AC1 4 HIS A 53 CYS A 83 CYS A 86 HOH A2002 SITE 1 AC2 7 CYS A 83 VAL A 84 GLY A 107 HOH A2052 SITE 2 AC2 7 HOH A2059 PHE B 122 ASN B 123 SITE 1 AC3 5 HIS B 53 GLU B 55 CYS B 83 CYS B 86 SITE 2 AC3 5 HOH B2003 SITE 1 AC4 7 PHE A 122 ASN A 123 CYS B 83 VAL B 84 SITE 2 AC4 7 GLY B 107 HOH B2041 HOH B2042 SITE 1 AC5 4 HIS C 53 CYS C 83 CYS C 86 HOH C2004 SITE 1 AC6 6 CYS C 83 VAL C 84 GLY C 107 HOH C2060 SITE 2 AC6 6 PHE D 122 ASN D 123 SITE 1 AC7 4 HIS D 53 CYS D 83 CYS D 86 HOH D2005 SITE 1 AC8 9 MET C 92 PHE C 122 ASN C 123 CYS D 83 SITE 2 AC8 9 VAL D 84 GLY D 107 HOH D2037 HOH D2053 SITE 3 AC8 9 HOH H 50 CRYST1 81.055 89.029 119.133 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008394 0.00000