HEADER LUMINESCENT PROTEIN 20-SEP-05 2B3P TITLE CRYSTAL STRUCTURE OF A SUPERFOLDER GREEN FLUORESCENT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET 28 C-6HIS KEYWDS 11-STRANDED BETA-BARREL, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.PEDELACQ,S.CABANTOUS,T.H.TRAN,T.C.TERWILLIGER,G.S.WALDO REVDAT 8 13-NOV-24 2B3P 1 REMARK REVDAT 7 15-NOV-23 2B3P 1 REMARK REVDAT 6 23-AUG-23 2B3P 1 REMARK REVDAT 5 20-OCT-21 2B3P 1 REMARK SEQADV LINK REVDAT 4 25-MAY-11 2B3P 1 DBREF REMARK REVDAT 3 30-JUN-09 2B3P 1 SEQADV REVDAT 2 24-FEB-09 2B3P 1 VERSN REVDAT 1 08-NOV-05 2B3P 0 JRNL AUTH J.D.PEDELACQ,S.CABANTOUS,T.TRAN,T.C.TERWILLIGER,G.S.WALDO JRNL TITL ENGINEERING AND CHARACTERIZATION OF A SUPERFOLDER GREEN JRNL TITL 2 FLUORESCENT PROTEIN. JRNL REF NAT.BIOTECHNOL. V. 24 79 2006 JRNL REFN ISSN 1087-0156 JRNL PMID 16369541 JRNL DOI 10.1038/NBT1172 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1487701.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 57393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5805 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6323 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 692 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.72000 REMARK 3 B22 (A**2) : 2.72000 REMARK 3 B33 (A**2) : -5.45000 REMARK 3 B12 (A**2) : 0.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.060 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.590 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.920 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.50 REMARK 3 BSOL : 61.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ALL.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : ALL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60830 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 21.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1B9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES-NAOH, SODIUM ACETATE, CADMIUM REMARK 280 SULFATE, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.11533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.23067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.23067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.11533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1074 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -157.83 -149.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 803 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 2 N REMARK 620 2 SER A 2 O 67.0 REMARK 620 3 GLU A 6 OE1 152.3 131.1 REMARK 620 4 GLU A 6 OE2 137.9 81.2 50.0 REMARK 620 5 GLU A 111 OE2 93.6 84.0 108.0 110.3 REMARK 620 6 GLU A 111 OE1 93.9 133.8 85.2 128.2 54.4 REMARK 620 7 HOH A 968 O 80.4 116.9 72.4 90.9 152.9 99.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 804 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 17 OE2 REMARK 620 2 GLU A 17 OE1 50.2 REMARK 620 3 ACY A 701 OXT 104.2 84.1 REMARK 620 4 ACY A 701 O 82.3 99.5 45.0 REMARK 620 5 ACY A 705 O 85.1 129.5 135.7 95.6 REMARK 620 6 ACY A 705 OXT 129.5 169.6 105.1 90.4 45.8 REMARK 620 7 HOH A 962 O 129.2 80.5 78.5 122.7 128.4 96.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 806 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 GLU A 132 OE2 72.4 REMARK 620 3 HOH A 955 O 105.8 82.7 REMARK 620 4 HOH A 977 O 62.4 62.9 145.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 808 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 32 OE1 REMARK 620 2 GLU A 32 OE2 49.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 807 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD2 REMARK 620 2 HOH A 966 O 152.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 802 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD2 REMARK 620 2 ACY A 703 O 135.4 REMARK 620 3 ACY A 703 OXT 83.8 51.7 REMARK 620 4 HOH A 930 O 92.1 86.2 84.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 801 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD1 REMARK 620 2 ASP A 102 OD2 54.4 REMARK 620 3 ASP A 129 OD1 134.0 92.2 REMARK 620 4 ASP A 129 OD2 91.6 89.6 53.6 REMARK 620 5 ACY A 704 O 96.3 150.0 115.7 98.0 REMARK 620 6 ACY A 707 O 74.2 81.0 136.9 165.8 85.3 REMARK 620 7 ACY A 707 OXT 114.6 89.1 92.7 146.1 99.8 45.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 805 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 142 OE2 REMARK 620 2 GLU A 142 OE1 53.6 REMARK 620 3 HOH A1137 O 87.9 83.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 809 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 149 O REMARK 620 2 LYS A 166 N 117.0 REMARK 620 3 ACY A 706 O 86.9 128.9 REMARK 620 4 HOH A 907 O 129.3 78.6 121.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 707 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EMA RELATED DB: PDB REMARK 900 GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA REMARK 900 RELATED ID: 2B3Q RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT POSITION 65, SER IS MUTATED TO THR, S65T. REMARK 999 CHROMOPHORE CRO 66 RESULTS FROM THE CYCLIZATION REMARK 999 DEHYDRATION OF RESIDUES THR65-TYR66-GLY67. DBREF 2B3P A 1 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 2B3P ARG A 30 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 2B3P ASN A 39 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 2B3P LEU A 64 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 2B3P CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2B3P CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2B3P CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2B3P ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2B3P SER A 99 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 2B3P THR A 105 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 2B3P PHE A 145 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 2B3P THR A 153 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 2B3P ALA A 163 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 2B3P VAL A 171 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 2B3P VAL A 206 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 2B3P GLY A 239 UNP P42212 EXPRESSION TAG SEQADV 2B3P SER A 240 UNP P42212 EXPRESSION TAG SEQADV 2B3P HIS A 241 UNP P42212 EXPRESSION TAG SEQADV 2B3P HIS A 242 UNP P42212 EXPRESSION TAG SEQADV 2B3P HIS A 243 UNP P42212 EXPRESSION TAG SEQADV 2B3P HIS A 244 UNP P42212 EXPRESSION TAG SEQADV 2B3P HIS A 245 UNP P42212 EXPRESSION TAG SEQADV 2B3P HIS A 246 UNP P42212 EXPRESSION TAG SEQRES 1 A 244 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 244 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 244 PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN SEQRES 4 A 244 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 244 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO SEQRES 6 A 244 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 244 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 244 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR SEQRES 9 A 244 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 244 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 244 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE SEQRES 12 A 244 ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 13 A 244 ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL SEQRES 14 A 244 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 244 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 244 ASN HIS TYR LEU SER THR GLN SER VAL LEU SER LYS ASP SEQRES 17 A 244 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 A 244 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 A 244 TYR LYS GLY SER HIS HIS HIS HIS HIS HIS MODRES 2B3P CRO A 66 GLY MODRES 2B3P CRO A 66 TYR MODRES 2B3P CRO A 66 GLY HET CRO A 66 22 HET CD A 801 1 HET CD A 802 1 HET CD A 803 1 HET CD A 804 1 HET CD A 805 1 HET CD A 806 1 HET CD A 807 1 HET CD A 808 1 HET CD A 809 1 HET ACY A 701 4 HET ACY A 703 4 HET ACY A 704 4 HET ACY A 705 4 HET ACY A 706 4 HET ACY A 707 4 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM CD CADMIUM ION HETNAM ACY ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 CD 9(CD 2+) FORMUL 11 ACY 6(C2 H4 O2) FORMUL 17 HOH *328(H2 O) HELIX 1 1 GLY A 4 THR A 9 5 6 HELIX 2 2 ALA A 37 ASN A 39 5 3 HELIX 3 3 PRO A 56 VAL A 61 5 6 HELIX 4 4 VAL A 68 SER A 72 5 5 HELIX 5 5 PRO A 75 HIS A 81 5 7 HELIX 6 6 ASP A 82 ALA A 87 1 6 HELIX 7 7 LYS A 156 ASN A 159 5 4 SHEET 1 A12 VAL A 12 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 THR A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.79 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.82 LINK N SER A 2 CD CD A 803 2655 1555 2.53 LINK O SER A 2 CD CD A 803 2655 1555 2.41 LINK OE1 GLU A 6 CD CD A 803 2655 1555 2.62 LINK OE2 GLU A 6 CD CD A 803 2655 1555 2.57 LINK OE2 GLU A 17 CD CD A 804 1555 1555 2.58 LINK OE1 GLU A 17 CD CD A 804 1555 1555 2.59 LINK NE2 HIS A 25 CD CD A 806 5555 1555 2.52 LINK OE1 GLU A 32 CD CD A 808 1555 1555 2.62 LINK OE2 GLU A 32 CD CD A 808 1555 1555 2.60 LINK OD2 ASP A 36 CD CD A 807 1555 1555 2.57 LINK OD2 ASP A 76 CD CD A 802 1555 1555 2.36 LINK OD1 ASP A 102 CD CD A 801 1555 1555 2.43 LINK OD2 ASP A 102 CD CD A 801 1555 1555 2.37 LINK OE2 GLU A 111 CD CD A 803 1555 1555 2.29 LINK OE1 GLU A 111 CD CD A 803 1555 1555 2.48 LINK OD1 ASP A 129 CD CD A 801 5555 1555 2.39 LINK OD2 ASP A 129 CD CD A 801 5555 1555 2.49 LINK OE2 GLU A 132 CD CD A 806 1555 1555 2.44 LINK OE2 GLU A 142 CD CD A 805 1555 1555 2.49 LINK OE1 GLU A 142 CD CD A 805 1555 1555 2.40 LINK O ASN A 149 CD CD A 809 1555 1555 2.94 LINK N LYS A 166 CD CD A 809 1555 1555 3.03 LINK OXT ACY A 701 CD CD A 804 1555 1555 2.84 LINK O ACY A 701 CD CD A 804 1555 1555 2.81 LINK O ACY A 703 CD CD A 802 1555 1555 2.51 LINK OXT ACY A 703 CD CD A 802 1555 1555 2.47 LINK O ACY A 704 CD CD A 801 5555 1555 2.57 LINK O ACY A 705 CD CD A 804 1555 1555 2.93 LINK OXT ACY A 705 CD CD A 804 1555 1555 2.60 LINK O ACY A 706 CD CD A 809 1555 1555 2.92 LINK O ACY A 707 CD CD A 801 1555 1555 2.94 LINK OXT ACY A 707 CD CD A 801 1555 1555 2.67 LINK CD CD A 802 O HOH A 930 1555 1555 2.45 LINK CD CD A 803 O HOH A 968 1555 2655 2.40 LINK CD CD A 804 O HOH A 962 1555 1555 2.62 LINK CD CD A 805 O HOH A1137 1555 1555 2.54 LINK CD CD A 806 O HOH A 955 1555 1555 2.72 LINK CD CD A 806 O HOH A 977 1555 5555 2.84 LINK CD CD A 807 O HOH A 966 1555 5554 2.75 LINK CD CD A 809 O HOH A 907 1555 1555 2.70 CISPEP 1 MET A 88 PRO A 89 0 0.32 SITE 1 AC1 4 ASP A 102 ASP A 129 ACY A 704 ACY A 707 SITE 1 AC2 5 ASP A 76 HIS A 77 HIS A 231 ACY A 703 SITE 2 AC2 5 HOH A 930 SITE 1 AC3 4 SER A 2 GLU A 6 GLU A 111 HOH A 968 SITE 1 AC4 4 GLU A 17 ACY A 701 ACY A 705 HOH A 962 SITE 1 AC5 2 GLU A 142 HOH A1137 SITE 1 AC6 4 HIS A 25 GLU A 132 HOH A 955 HOH A 977 SITE 1 AC7 2 ASP A 36 HOH A 966 SITE 1 AC8 1 GLU A 32 SITE 1 AC9 5 ASN A 149 PHE A 165 LYS A 166 ACY A 706 SITE 2 AC9 5 HOH A 907 SITE 1 BC1 8 GLU A 17 ASP A 76 HIS A 77 ARG A 122 SITE 2 BC1 8 HIS A 231 CD A 804 HOH A 951 HOH A1033 SITE 1 BC2 9 PRO A 75 ASP A 76 HIS A 77 ASN A 149 SITE 2 BC2 9 TYR A 151 TYR A 200 CD A 802 HOH A 830 SITE 3 BC2 9 HOH A 883 SITE 1 BC3 6 ASP A 102 ASP A 129 LYS A 131 CD A 801 SITE 2 BC3 6 HOH A 882 HOH A 998 SITE 1 BC4 5 HIS A 77 THR A 230 GLY A 232 CD A 804 SITE 2 BC4 5 HOH A1033 SITE 1 BC5 7 ARG A 73 HIS A 148 ASN A 149 TYR A 151 SITE 2 BC5 7 ARG A 168 CD A 809 HOH A 929 SITE 1 BC6 4 ASP A 102 ASP A 129 CD A 801 HOH A 920 CRYST1 88.456 88.456 69.346 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011305 0.006527 0.000000 0.00000 SCALE2 0.000000 0.013054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014420 0.00000