HEADER LECTIN 05-OCT-05 2B7Y TITLE FAVA BEAN LECTIN-GLUCOSE COMPLEX CAVEAT 2B7Y NAG A 803 HAS WRONG CHIRALITY AT ATOM C1 NAG C 804 HAS WRONG CAVEAT 2 2B7Y CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAVIN BETA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 1-182; COMPND 5 SYNONYM: LECTIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAVIN ALPHA CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: RESIDUES 183-233; COMPND 10 SYNONYM: LECTIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICIA FABA; SOURCE 3 ORGANISM_COMMON: FAVA BEAN; SOURCE 4 ORGANISM_TAXID: 3906; SOURCE 5 OTHER_DETAILS: EXTRACTED FROM SEEDS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: VICIA FABA; SOURCE 8 ORGANISM_COMMON: FAVA BEAN; SOURCE 9 ORGANISM_TAXID: 3906; SOURCE 10 OTHER_DETAILS: EXTRACTED FROM SEEDS KEYWDS LECTIN-GLUCOSE COMPLEX, PLANT LECTIN, GLYCOPROTEIN, CARBOHYDRATE KEYWDS 2 BINDING PROTEIN, D-GLUCOSE, PROTEIN-CARBOHYDRATE COMPLEX, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR G.N.REEKE JR.,J.W.BECKER REVDAT 4 03-APR-24 2B7Y 1 HETSYN REVDAT 3 29-JUL-20 2B7Y 1 CAVEAT COMPND REMARK HET REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 24-FEB-09 2B7Y 1 VERSN REVDAT 1 18-OCT-05 2B7Y 0 JRNL AUTH G.N.REEKE JR.,J.W.BECKER JRNL TITL THREE-DIMENSIONAL STRUCTURE OF FAVIN: SACCHARIDE JRNL TITL 2 BINDING-CYCLIC PERMUTATION IN LEGUMINOUS LECTINS JRNL REF SCIENCE V. 234 1108 1986 JRNL REFN ISSN 0036-8075 JRNL PMID 3775378 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.WANG,J.W.BECKER,G.M.EDELMAN,G.N.REEKE JR. REMARK 1 TITL FAVIN, A CRYSTALLINE LECTIN FROM VICIA FABA REMARK 1 REF J.MOL.BIOL. V. 88 259 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.J.HEMPERLY,T.P.HOPP,J.W.BECKER,B.A.CUNNINGHAM REMARK 1 TITL THE CHEMICAL CHARACTERIZATION OF FAVIN, A LECTIN ISOLATED REMARK 1 TITL 2 FROM VICIA FABA REMARK 1 REF J.BIOL.CHEM. V. 254 6803 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.P.HOPP,J.J.HEMPERLY,B.A.CUNNINGHAM REMARK 1 TITL AMINO ACID SEQUENCE AND VARIANT FORMS OF FAVIN, A LECTIN REMARK 1 TITL 2 FROM VICIA FABA REMARK 1 REF J.BIOL.CHEM. V. 257 4473 1982 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 10599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 578 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -2.20000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.563 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.387 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.836 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3710 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5072 ; 2.056 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 8.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;37.086 ;24.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;21.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2806 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2066 ; 0.303 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2622 ; 0.347 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.233 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.188 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.291 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2311 ; 0.950 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3692 ; 1.692 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1613 ; 1.842 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1380 ; 3.057 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. EARLY REFINEMENT USED PROLSQ (AUTHORS: KONNERT AND REMARK 3 HENDRICKSON) FOLLOWED BY TORSION-ANGLE MOLECULAR DYNAMICS REMARK 3 REFINEMENT USING CNX (AUTHORS: BRUNGER, ADAMS, CLORE, DELANO, REMARK 3 GROS, GROSSE-KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, READ, REMARK 3 RICE, SIMONSON, WARREN). REMARK 4 REMARK 4 2B7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-6 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : FILM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : ROCKS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10599 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CROWTHER REMARK 200 STARTING MODEL: PEA LECTIN. EINSPAHR ET AL. (1986) J.BIOL.CHEM. REMARK 200 261:16518-16527. REMARK 200 REMARK 200 REMARK: THE DATA WERE COLLECTED IN 1974, THE EXACT DATE IS NOT REMARK 200 AVAILABLE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M GLUCOSE, 0.01 M SODIUM PHOSPHATE, REMARK 280 PH 6.5, MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS BIOLOGICAL ASSEMBLY, AN ALPHA(2)- REMARK 300 BETA(2) TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLY B 230 REMARK 465 PRO B 231 REMARK 465 SER B 232 REMARK 465 ASN B 233 REMARK 465 THR C 1 REMARK 465 GLY D 230 REMARK 465 PRO D 231 REMARK 465 SER D 232 REMARK 465 ASN D 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN A 182 N LEU B 183 2.02 REMARK 500 OG1 THR C 58 OD1 ASN C 60 2.09 REMARK 500 OG SER A 56 OE2 GLU B 200 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 2 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASN A 133 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 LEU B 183 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 ASP B 196 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 73 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 109 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 111 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 LEU C 178 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP D 196 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 118.64 -164.08 REMARK 500 ILE A 4 103.64 67.83 REMARK 500 PRO A 14 -56.77 -25.27 REMARK 500 ALA A 37 91.16 -61.79 REMARK 500 PRO A 50 162.18 -43.16 REMARK 500 THR A 85 128.13 -174.89 REMARK 500 ASP A 92 44.30 -145.01 REMARK 500 LYS A 108 -5.92 -55.89 REMARK 500 TYR A 110 105.98 -47.01 REMARK 500 ASP A 111 74.05 -115.79 REMARK 500 THR A 113 -76.67 -52.12 REMARK 500 ASN A 133 -9.31 -176.79 REMARK 500 ASN A 143 17.75 51.58 REMARK 500 ILE A 148 1.12 -64.70 REMARK 500 SER A 149 148.94 174.28 REMARK 500 THR A 171 13.41 -145.53 REMARK 500 ASN A 172 39.46 34.35 REMARK 500 PRO B 193 87.50 -69.69 REMARK 500 ALA B 215 157.73 176.54 REMARK 500 THR C 28 -165.81 -74.55 REMARK 500 GLU C 30 -46.03 -162.00 REMARK 500 ALA C 37 91.19 -64.54 REMARK 500 ASN C 40 67.00 32.09 REMARK 500 SER C 48 -53.10 -26.02 REMARK 500 VAL C 104 -34.36 -145.12 REMARK 500 ASN C 106 -78.33 -118.66 REMARK 500 TYR C 110 108.46 -48.63 REMARK 500 GLN C 115 22.85 -78.60 REMARK 500 TRP C 129 -24.60 -171.59 REMARK 500 ASN C 143 -7.14 81.85 REMARK 500 SER C 175 154.03 177.06 REMARK 500 GLU D 190 134.30 176.64 REMARK 500 VAL D 192 113.79 -161.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 120 OE1 REMARK 620 2 ASP A 122 OD2 108.0 REMARK 620 3 ASP A 130 OD1 139.8 87.2 REMARK 620 4 HIS A 137 NE2 112.8 97.8 101.2 REMARK 620 5 HOH A 702 O 76.7 159.8 77.8 98.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 122 OD1 REMARK 620 2 ASP A 122 OD2 54.0 REMARK 620 3 PHE A 124 O 76.9 130.4 REMARK 620 4 ASN A 126 OD1 153.1 150.4 79.0 REMARK 620 5 ASP A 130 OD2 106.3 102.9 82.6 82.1 REMARK 620 6 ASP A 130 OD1 95.5 65.6 118.6 106.4 40.6 REMARK 620 7 HOH A 701 O 85.0 102.0 78.1 78.5 154.8 163.1 REMARK 620 8 HOH A 703 O 125.3 75.2 152.4 75.2 103.4 78.8 87.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 120 OE1 REMARK 620 2 ASP C 122 OD2 61.4 REMARK 620 3 ASP C 130 OD1 164.4 103.0 REMARK 620 4 HIS C 137 NE2 81.2 98.5 102.3 REMARK 620 5 HOH C 706 O 80.7 117.3 108.8 124.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 122 OD1 REMARK 620 2 ASP C 122 OD2 47.1 REMARK 620 3 PHE C 124 O 75.1 116.7 REMARK 620 4 ASN C 126 OD1 159.8 124.8 99.7 REMARK 620 5 ASP C 130 OD2 88.5 86.6 65.5 71.9 REMARK 620 6 HOH C 705 O 112.7 65.6 151.5 63.1 86.8 REMARK 620 7 HOH C 709 O 127.8 137.8 94.6 71.5 134.1 100.4 REMARK 620 N 1 2 3 4 5 6 DBREF 2B7Y A 1 182 UNP P02871 LEC_VICFA 1 182 DBREF 2B7Y C 1 182 UNP P02871 LEC_VICFA 1 182 DBREF 2B7Y B 183 233 UNP P02871 LEC_VICFA 183 233 DBREF 2B7Y D 183 233 UNP P02871 LEC_VICFA 183 233 SEQRES 1 A 182 THR ASP GLU ILE THR SER PHE SER ILE PRO LYS PHE ARG SEQRES 2 A 182 PRO ASP GLN PRO ASN LEU ILE PHE GLN GLY GLY GLY TYR SEQRES 3 A 182 THR THR LYS GLU LYS LEU THR LEU THR LYS ALA VAL LYS SEQRES 4 A 182 ASN THR VAL GLY ARG ALA LEU TYR SER LEU PRO ILE HIS SEQRES 5 A 182 ILE TRP ASP SER GLU THR GLY ASN VAL ALA ASP PHE THR SEQRES 6 A 182 THR THR PHE ILE PHE VAL ILE ASP ALA PRO ASN GLY TYR SEQRES 7 A 182 ASN VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL SEQRES 8 A 182 ASP THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL SEQRES 9 A 182 PHE ASN GLY LYS ASP TYR ASP LYS THR ALA GLN THR VAL SEQRES 10 A 182 ALA VAL GLU PHE ASP THR PHE TYR ASN ALA ALA TRP ASP SEQRES 11 A 182 PRO SER ASN GLY LYS ARG HIS ILE GLY ILE ASP VAL ASN SEQRES 12 A 182 THR ILE LYS SER ILE SER THR LYS SER TRP ASN LEU GLN SEQRES 13 A 182 ASN GLY GLU GLU ALA HIS VAL ALA ILE SER PHE ASN ALA SEQRES 14 A 182 THR THR ASN VAL LEU SER VAL THR LEU LEU TYR PRO ASN SEQRES 1 B 51 LEU THR GLY TYR THR LEU SER GLU VAL VAL PRO LEU LYS SEQRES 2 B 51 ASP VAL VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 B 51 THR THR GLY ALA GLU TYR ALA THR HIS GLU VAL LEU SER SEQRES 4 B 51 TRP THR PHE LEU SER GLU LEU THR GLY PRO SER ASN SEQRES 1 C 182 THR ASP GLU ILE THR SER PHE SER ILE PRO LYS PHE ARG SEQRES 2 C 182 PRO ASP GLN PRO ASN LEU ILE PHE GLN GLY GLY GLY TYR SEQRES 3 C 182 THR THR LYS GLU LYS LEU THR LEU THR LYS ALA VAL LYS SEQRES 4 C 182 ASN THR VAL GLY ARG ALA LEU TYR SER LEU PRO ILE HIS SEQRES 5 C 182 ILE TRP ASP SER GLU THR GLY ASN VAL ALA ASP PHE THR SEQRES 6 C 182 THR THR PHE ILE PHE VAL ILE ASP ALA PRO ASN GLY TYR SEQRES 7 C 182 ASN VAL ALA ASP GLY PHE THR PHE PHE ILE ALA PRO VAL SEQRES 8 C 182 ASP THR LYS PRO GLN THR GLY GLY GLY TYR LEU GLY VAL SEQRES 9 C 182 PHE ASN GLY LYS ASP TYR ASP LYS THR ALA GLN THR VAL SEQRES 10 C 182 ALA VAL GLU PHE ASP THR PHE TYR ASN ALA ALA TRP ASP SEQRES 11 C 182 PRO SER ASN GLY LYS ARG HIS ILE GLY ILE ASP VAL ASN SEQRES 12 C 182 THR ILE LYS SER ILE SER THR LYS SER TRP ASN LEU GLN SEQRES 13 C 182 ASN GLY GLU GLU ALA HIS VAL ALA ILE SER PHE ASN ALA SEQRES 14 C 182 THR THR ASN VAL LEU SER VAL THR LEU LEU TYR PRO ASN SEQRES 1 D 51 LEU THR GLY TYR THR LEU SER GLU VAL VAL PRO LEU LYS SEQRES 2 D 51 ASP VAL VAL PRO GLU TRP VAL ARG ILE GLY PHE SER ALA SEQRES 3 D 51 THR THR GLY ALA GLU TYR ALA THR HIS GLU VAL LEU SER SEQRES 4 D 51 TRP THR PHE LEU SER GLU LEU THR GLY PRO SER ASN MODRES 2B7Y ASN A 168 ASN GLYCOSYLATION SITE MODRES 2B7Y ASN C 168 ASN GLYCOSYLATION SITE HET GLC A 801 12 HET NAG A 803 14 HET MN A 501 1 HET CA A 502 1 HET GLC C 802 12 HET NAG C 804 14 HET MN C 601 1 HET CA C 602 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 GLC 2(C6 H12 O6) FORMUL 6 NAG 2(C8 H15 N O6) FORMUL 7 MN 2(MN 2+) FORMUL 8 CA 2(CA 2+) FORMUL 13 HOH *8(H2 O) HELIX 1 1 GLY A 98 LEU A 102 5 5 HELIX 2 2 PRO B 193 VAL B 197 5 5 HELIX 3 3 GLY C 98 LEU C 102 5 5 HELIX 4 4 PRO D 193 VAL D 198 1 6 SHEET 1 A 7 LEU A 32 THR A 35 0 SHEET 2 A 7 THR B 216 GLU B 227 -1 O HIS B 217 N LEU A 34 SHEET 3 A 7 THR A 5 ILE A 9 -1 N THR A 5 O SER B 226 SHEET 4 A 7 GLU C 3 ILE C 9 -1 O SER C 6 N SER A 6 SHEET 5 A 7 THR D 216 LEU D 228 -1 O TRP D 222 N ILE C 9 SHEET 6 A 7 LEU C 32 THR C 35 -1 N LEU C 32 O VAL D 219 SHEET 7 A 7 TYR C 26 THR C 27 -1 N TYR C 26 O THR C 33 SHEET 1 B12 GLY B 185 VAL B 191 0 SHEET 2 B12 VAL A 173 LEU A 179 -1 N LEU A 178 O TYR B 186 SHEET 3 B12 ALA A 161 ASN A 168 -1 N HIS A 162 O LEU A 179 SHEET 4 B12 ASP A 63 ASP A 73 -1 N THR A 66 O ILE A 165 SHEET 5 B12 THR B 216 GLU B 227 -1 O LEU B 220 N ILE A 69 SHEET 6 B12 THR A 5 ILE A 9 -1 N THR A 5 O SER B 226 SHEET 7 B12 GLU C 3 ILE C 9 -1 O SER C 6 N SER A 6 SHEET 8 B12 THR D 216 LEU D 228 -1 O TRP D 222 N ILE C 9 SHEET 9 B12 ASP C 63 ASP C 73 -1 N THR C 67 O THR D 223 SHEET 10 B12 ALA C 161 PHE C 167 -1 O ILE C 165 N THR C 66 SHEET 11 B12 VAL C 173 TYR C 180 -1 O THR C 177 N ALA C 164 SHEET 12 B12 THR D 184 VAL D 191 -1 O LEU D 188 N VAL C 176 SHEET 1 C 4 LEU A 19 GLY A 23 0 SHEET 2 C 4 VAL A 42 TYR A 47 -1 O LEU A 46 N ILE A 20 SHEET 3 C 4 TRP B 201 THR B 209 -1 O PHE B 206 N ALA A 45 SHEET 4 C 4 ILE A 51 HIS A 52 -1 N ILE A 51 O VAL B 202 SHEET 1 D 7 LEU A 19 GLY A 23 0 SHEET 2 D 7 VAL A 42 TYR A 47 -1 O LEU A 46 N ILE A 20 SHEET 3 D 7 TRP B 201 THR B 209 -1 O PHE B 206 N ALA A 45 SHEET 4 D 7 GLY A 83 PRO A 90 -1 N PHE A 87 O GLY B 205 SHEET 5 D 7 VAL A 117 ASP A 122 -1 O VAL A 119 N PHE A 86 SHEET 6 D 7 HIS A 137 VAL A 142 -1 O ASP A 141 N ALA A 118 SHEET 7 D 7 SER A 149 SER A 152 -1 O LYS A 151 N ILE A 138 SHEET 1 E 4 LEU C 19 GLY C 23 0 SHEET 2 E 4 GLY C 43 TYR C 47 -1 O LEU C 46 N ILE C 20 SHEET 3 E 4 TRP D 201 ALA D 208 -1 O ALA D 208 N GLY C 43 SHEET 4 E 4 ILE C 51 HIS C 52 -1 N ILE C 51 O VAL D 202 SHEET 1 F 7 LEU C 19 GLY C 23 0 SHEET 2 F 7 GLY C 43 TYR C 47 -1 O LEU C 46 N ILE C 20 SHEET 3 F 7 TRP D 201 ALA D 208 -1 O ALA D 208 N GLY C 43 SHEET 4 F 7 PHE C 84 PRO C 90 -1 N THR C 85 O SER D 207 SHEET 5 F 7 VAL C 117 ASP C 122 -1 O VAL C 119 N PHE C 86 SHEET 6 F 7 HIS C 137 VAL C 142 -1 O ASP C 141 N ALA C 118 SHEET 7 F 7 SER C 149 SER C 152 -1 O LYS C 151 N ILE C 138 LINK ND2 ASN A 168 C1 NAG A 803 1555 1555 1.47 LINK ND2 ASN C 168 C1 NAG C 804 1555 1555 1.46 LINK OE1 GLU A 120 MN MN A 501 1555 1555 2.76 LINK OD2 ASP A 122 MN MN A 501 1555 1555 2.45 LINK OD1 ASP A 122 CA CA A 502 1555 1555 2.45 LINK OD2 ASP A 122 CA CA A 502 1555 1555 2.29 LINK O PHE A 124 CA CA A 502 1555 1555 2.32 LINK OD1 ASN A 126 CA CA A 502 1555 1555 2.42 LINK OD1 ASP A 130 MN MN A 501 1555 1555 2.02 LINK OD2 ASP A 130 CA CA A 502 1555 1555 2.09 LINK OD1 ASP A 130 CA CA A 502 1555 1555 3.24 LINK NE2 HIS A 137 MN MN A 501 1555 1555 2.16 LINK MN MN A 501 O HOH A 702 1555 1555 2.59 LINK CA CA A 502 O HOH A 701 1555 1555 2.36 LINK CA CA A 502 O HOH A 703 1555 1555 2.56 LINK OE1 GLU C 120 MN MN C 601 1555 1555 2.87 LINK OD2 ASP C 122 MN MN C 601 1555 1555 1.92 LINK OD1 ASP C 122 CA CA C 602 1555 1555 2.30 LINK OD2 ASP C 122 CA CA C 602 1555 1555 2.89 LINK O PHE C 124 CA CA C 602 1555 1555 2.43 LINK OD1 ASN C 126 CA CA C 602 1555 1555 3.03 LINK OD1 ASP C 130 MN MN C 601 1555 1555 1.99 LINK OD2 ASP C 130 CA CA C 602 1555 1555 2.61 LINK NE2 HIS C 137 MN MN C 601 1555 1555 2.05 LINK MN MN C 601 O HOH C 706 1555 1555 2.16 LINK CA CA C 602 O HOH C 705 1555 1555 2.55 LINK CA CA C 602 O HOH C 709 1555 1555 2.23 CISPEP 1 ALA A 81 ASP A 82 0 4.36 CISPEP 2 ALA C 81 ASP C 82 0 5.77 CRYST1 90.000 89.300 67.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014837 0.00000