HEADER TRANSFERASE 10-OCT-05 2B8P TITLE CRYSTAL STRUCTURE OF ACANTHAMOEBA POLYPHAGA MIMIVIRUS NDK, THE FIRST TITLE 2 VIRAL NUCLEOSIDE DIPHOSPHATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDK, NDP KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIMIVIRUS; SOURCE 3 ORGANISM_TAXID: 315393; SOURCE 4 GENE: NDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDIGS02 KEYWDS NDK, PHOSPHOTRANSFERASE, NUCLEOTIDE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JEUDY,J.M.CLAVERIE,C.ABERGEL REVDAT 4 23-AUG-23 2B8P 1 REMARK SEQADV REVDAT 3 25-AUG-09 2B8P 1 JRNL REVDAT 2 24-FEB-09 2B8P 1 VERSN REVDAT 1 15-NOV-05 2B8P 0 JRNL AUTH S.JEUDY,A.LARTIGUE,J.M.CLAVERIE,C.ABERGEL JRNL TITL DISSECTING THE UNIQUE NUCLEOTIDE SPECIFICITY OF MIMIVIRUS JRNL TITL 2 NUCLEOSIDE DIPHOSPHATE KINASE. JRNL REF J.VIROL. V. 83 7142 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19439473 JRNL DOI 10.1128/JVI.00511-09 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1541510.840 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 10346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1484 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 52.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97563 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8922 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 70.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25600 REMARK 200 R SYM FOR SHELL (I) : 0.25600 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1K44 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1.6M, MES 0.1M, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.71250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.71250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.71250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.71250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.71250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.71250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 49.71250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 49.71250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 49.71250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 49.71250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 49.71250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 49.71250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 49.71250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 49.71250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 49.71250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 49.71250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 49.71250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 49.71250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -49.71250 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 49.71250 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 99.42500 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 49.71250 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 99.42500 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 49.71250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5034 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -19 REMARK 465 TYR A -18 REMARK 465 TYR A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 SER A -8 REMARK 465 THR A -7 REMARK 465 SER A -6 REMARK 465 LEU A -5 REMARK 465 HIS A 53 REMARK 465 SER A 54 REMARK 465 GLU A 55 REMARK 465 GLN A 56 REMARK 465 SER A 57 REMARK 465 GLU A 130 REMARK 465 THR A 131 REMARK 465 LYS A 132 REMARK 465 MET A 133 REMARK 465 GLU A 134 REMARK 465 THR A 135 REMARK 465 ASP A 136 REMARK 465 ASN A 137 REMARK 465 SER B -19 REMARK 465 TYR B -18 REMARK 465 TYR B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 LEU B -10 REMARK 465 GLU B -9 REMARK 465 SER B -8 REMARK 465 THR B -7 REMARK 465 SER B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 LYS B -3 REMARK 465 LYS B -2 REMARK 465 ALA B -1 REMARK 465 GLU B 130 REMARK 465 THR B 131 REMARK 465 LYS B 132 REMARK 465 MET B 133 REMARK 465 GLU B 134 REMARK 465 THR B 135 REMARK 465 ASP B 136 REMARK 465 ASN B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A -2 -55.98 -17.02 REMARK 500 ALA A -1 147.84 -16.39 REMARK 500 ASN A 29 32.28 71.71 REMARK 500 LYS A 40 88.14 -172.79 REMARK 500 LYS A 51 85.90 -51.20 REMARK 500 SER A 68 -82.69 -57.28 REMARK 500 ASN A 104 49.18 -148.09 REMARK 500 LEU A 110 -39.87 68.48 REMARK 500 ASN B 104 25.52 -148.28 REMARK 500 LEU B 110 -39.21 58.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B8Q RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF ACANTHAMOEBA PLOYPHAGA MIMIVIRUS NUCLEOSIDE REMARK 900 DIPHOSPHATE KINASE COMPLEXED WITH TDP DBREF 2B8P A 2 137 UNP Q5UQL3 NDK_MIMIV 2 137 DBREF 2B8P B 2 137 UNP Q5UQL3 NDK_MIMIV 2 137 SEQADV 2B8P SER A -19 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P TYR A -18 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P TYR A -17 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS A -16 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS A -15 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS A -14 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS A -13 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS A -12 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS A -11 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LEU A -10 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P GLU A -9 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P SER A -8 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P THR A -7 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P SER A -6 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LEU A -5 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P TYR A -4 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LYS A -3 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LYS A -2 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P ALA A -1 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P GLY A 0 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LEU A 1 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P SER B -19 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P TYR B -18 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P TYR B -17 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS B -16 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS B -15 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS B -14 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS B -13 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS B -12 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P HIS B -11 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LEU B -10 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P GLU B -9 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P SER B -8 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P THR B -7 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P SER B -6 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LEU B -5 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P TYR B -4 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LYS B -3 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LYS B -2 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P ALA B -1 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P GLY B 0 UNP Q5UQL3 EXPRESSION TAG SEQADV 2B8P LEU B 1 UNP Q5UQL3 EXPRESSION TAG SEQRES 1 A 157 SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER THR SEQRES 2 A 157 SER LEU TYR LYS LYS ALA GLY LEU GLN ARG THR LEU VAL SEQRES 3 A 157 LEU ILE LYS PRO ASP ALA PHE GLU ARG SER LEU VAL ALA SEQRES 4 A 157 GLU ILE MET GLY ARG ILE GLU LYS LYS ASN PHE LYS ILE SEQRES 5 A 157 VAL SER MET LYS PHE TRP SER LYS ALA PRO ARG ASN LEU SEQRES 6 A 157 ILE GLU GLN HIS TYR LYS GLU HIS SER GLU GLN SER TYR SEQRES 7 A 157 PHE ASN ASP ASN CYS ASP PHE MET VAL SER GLY PRO ILE SEQRES 8 A 157 ILE SER ILE VAL TYR GLU GLY THR ASP ALA ILE SER LYS SEQRES 9 A 157 ILE ARG ARG LEU GLN GLY ASN ILE LEU THR PRO GLY THR SEQRES 10 A 157 ILE ARG GLY ASP LEU ALA ASN ASP ILE ARG GLU ASN LEU SEQRES 11 A 157 ILE HIS ALA SER ASP SER GLU ASP SER ALA VAL ASP GLU SEQRES 12 A 157 ILE SER ILE TRP PHE PRO GLU THR LYS MET GLU THR ASP SEQRES 13 A 157 ASN SEQRES 1 B 157 SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER THR SEQRES 2 B 157 SER LEU TYR LYS LYS ALA GLY LEU GLN ARG THR LEU VAL SEQRES 3 B 157 LEU ILE LYS PRO ASP ALA PHE GLU ARG SER LEU VAL ALA SEQRES 4 B 157 GLU ILE MET GLY ARG ILE GLU LYS LYS ASN PHE LYS ILE SEQRES 5 B 157 VAL SER MET LYS PHE TRP SER LYS ALA PRO ARG ASN LEU SEQRES 6 B 157 ILE GLU GLN HIS TYR LYS GLU HIS SER GLU GLN SER TYR SEQRES 7 B 157 PHE ASN ASP ASN CYS ASP PHE MET VAL SER GLY PRO ILE SEQRES 8 B 157 ILE SER ILE VAL TYR GLU GLY THR ASP ALA ILE SER LYS SEQRES 9 B 157 ILE ARG ARG LEU GLN GLY ASN ILE LEU THR PRO GLY THR SEQRES 10 B 157 ILE ARG GLY ASP LEU ALA ASN ASP ILE ARG GLU ASN LEU SEQRES 11 B 157 ILE HIS ALA SER ASP SER GLU ASP SER ALA VAL ASP GLU SEQRES 12 B 157 ILE SER ILE TRP PHE PRO GLU THR LYS MET GLU THR ASP SEQRES 13 B 157 ASN HET SO4 A5000 5 HET SO4 A5002 5 HET SO4 B5001 5 HET SO4 B5003 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *76(H2 O) HELIX 1 1 LYS A 9 ARG A 15 1 7 HELIX 2 2 LEU A 17 LYS A 28 1 12 HELIX 3 3 PRO A 42 TYR A 50 1 9 HELIX 4 4 TYR A 58 GLY A 69 1 12 HELIX 5 5 ASP A 80 GLY A 90 1 11 HELIX 6 6 THR A 97 ALA A 103 1 7 HELIX 7 7 SER A 116 PHE A 128 1 13 HELIX 8 8 LYS B 9 ARG B 15 1 7 HELIX 9 9 LEU B 17 LYS B 28 1 12 HELIX 10 10 PRO B 42 TYR B 50 1 9 HELIX 11 11 LYS B 51 SER B 54 5 4 HELIX 12 12 TYR B 58 VAL B 67 1 10 HELIX 13 13 ASP B 80 GLY B 90 1 11 HELIX 14 14 THR B 97 ALA B 103 1 7 HELIX 15 15 SER B 116 PHE B 128 1 13 SHEET 1 A 4 LYS A 31 TRP A 38 0 SHEET 2 A 4 ILE A 71 GLY A 78 -1 O ILE A 71 N TRP A 38 SHEET 3 A 4 GLN A 2 ILE A 8 -1 N ILE A 8 O ILE A 72 SHEET 4 A 4 ILE A 111 ALA A 113 -1 O HIS A 112 N LEU A 7 SHEET 1 B 4 LYS B 31 TRP B 38 0 SHEET 2 B 4 ILE B 71 THR B 79 -1 O ILE B 71 N TRP B 38 SHEET 3 B 4 LEU B 1 ILE B 8 -1 N VAL B 6 O ILE B 74 SHEET 4 B 4 ILE B 111 ALA B 113 -1 O HIS B 112 N LEU B 7 SITE 1 AC1 6 LYS A 9 TYR A 50 ARG A 86 ARG A 99 SITE 2 AC1 6 ASN A 109 HIS A 112 SITE 1 AC2 7 HOH A5037 LYS B 9 TYR B 50 ARG B 99 SITE 2 AC2 7 ASN B 109 HIS B 112 HOH B5036 SITE 1 AC3 5 ASN A 91 ILE A 92 ARG A 99 ILE A 106 SITE 2 AC3 5 HOH A5030 SITE 1 AC4 4 ARG A 107 HIS B 53 GLN B 56 TYR B 58 CRYST1 99.425 99.425 99.425 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010058 0.00000