data_2B8S # _entry.id 2B8S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2B8S pdb_00002b8s 10.2210/pdb2b8s/pdb NDB UR0072 ? ? RCSB RCSB034817 ? ? WWPDB D_1000034817 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2005-10-25 _pdbx_database_PDB_obs_spr.pdb_id 2B8S _pdbx_database_PDB_obs_spr.replace_pdb_id 1JJN _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2B8R 'HIV-1 Subtype-B DIS RNA loop-loop complex' unspecified PDB 1XPE 'HIV-1 Subtype-B DIS RNA loop-loop complex' unspecified PDB 1XPF 'HIV-1 Subtype-A DIS RNA loop-loop complex' unspecified PDB 1XP7 'HIV-1 Subtype-F DIS RNA loop-loop complex' unspecified PDB 1Y3S 'HIV-1 Subtype-F DIS RNA loop-loop complex' unspecified PDB 1ZCI 'HIV-1 Subtype-F DIS RNA loop-loop complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2B8S _pdbx_database_status.recvd_initial_deposition_date 2005-10-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Walter, P.' 2 'Ehresmann, B.' 3 'Ehresmann, C.' 4 'Dumas, P.' 5 # _citation.id primary _citation.title 'Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site' _citation.journal_abbrev NAT.STRUCT.BIOL. _citation.journal_volume 8 _citation.page_first 1064 _citation.page_last 1068 _citation.year 2001 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11702070 _citation.pdbx_database_id_DOI 10.1038/nsb727 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Walter, P.' 2 ? primary 'Ehresmann, B.' 3 ? primary 'Ehresmann, C.' 4 ? primary 'Dumas, P.' 5 ? # _cell.entry_id 2B8S _cell.length_a 27.076 _cell.length_b 114.822 _cell.length_c 94.399 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2B8S _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'" 7402.472 2 ? ? ? 'HIV-1 DIS RNA' 2 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2B8S _struct_ref.pdbx_db_accession 2B8S _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2B8S A 1 ? 23 ? 2B8S 1 ? 23 ? 1 23 2 1 2B8S B 1 ? 23 ? 2B8S 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2B8S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG8000, AMMONIUM SULFATE, SODIUM CACODYLATE, SPERMINE, MAGNESIUM CHLORIDE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG8000 ? ? ? 1 2 1 'AMMONIUM SULFATE' ? ? ? 1 3 1 'SODIUM CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 'MAGNESIUM CHLORIDE' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 PEG8000 ? ? ? 1 8 2 'AMMONIUM SULFATE' ? ? ? 1 9 2 'SODIUM CACODYLATE' ? ? ? 1 10 2 'MAGNESIUM CHLORIDE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.28 # _reflns.entry_id 2B8S _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.76 _reflns.number_obs 4138 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 27.0 _reflns.B_iso_Wilson_estimate 29.2 _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.76 _reflns_shell.d_res_low 2.86 _reflns_shell.percent_possible_all 95.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.099 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2B8S _refine.ls_number_reflns_obs 3728 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1062478.76 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 2.76 _refine.ls_percent_reflns_obs 95.9 _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.213 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.4 _refine.ls_number_reflns_R_free 313 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.4 _refine.aniso_B[1][1] -1.19 _refine.aniso_B[2][2] -4.96 _refine.aniso_B[3][3] 6.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.325016 _refine.solvent_model_param_bsol 33.7256 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 1JJM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2B8S _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.33 _refine_analyze.Luzzati_sigma_a_free 0.47 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 980 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 1133 _refine_hist.d_res_high 2.76 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 7.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.39 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.76 _refine_ls_shell.d_res_low 2.92 _refine_ls_shell.number_reflns_R_work 525 _refine_ls_shell.R_factor_R_work 0.351 _refine_ls_shell.percent_reflns_obs 91.2 _refine_ls_shell.R_factor_R_free 0.401 _refine_ls_shell.R_factor_R_free_error 0.055 _refine_ls_shell.percent_reflns_R_free 9.3 _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water.top 'X-RAY DIFFRACTION' 2 luc.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 bru_rep.param bru.top 'X-RAY DIFFRACTION' 5 neamine.param neamine.top 'X-RAY DIFFRACTION' # _struct.entry_id 2B8S _struct.title 'Structure of HIV-1(MAL) genomic RNA DIS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2B8S _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, hairpin' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 2 ? O N N 4 ? P N N 2 ? Q N N 5 ? R N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 103 A HOH 229 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 103 A HOH 254 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 103 A HOH 269 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 B HOH 215 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 B HOH 262 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 R HOH . O ? ? A MG 103 B HOH 315 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 244 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 272 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 300 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 105 A HOH 310 1_555 ? ? ? ? ? ? ? 2.503 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 21 N1 ? ? A U 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 21 N6 ? ? A U 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? B U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? B U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 101 ? 3 'BINDING SITE FOR RESIDUE SO4 B 101' AC2 Software B SO4 102 ? 6 'BINDING SITE FOR RESIDUE SO4 B 102' AC3 Software A MG 103 ? 6 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software A SO4 104 ? 3 'BINDING SITE FOR RESIDUE SO4 A 104' AC5 Software A MG 105 ? 4 'BINDING SITE FOR RESIDUE MG A 105' AC6 Software A SO4 106 ? 2 'BINDING SITE FOR RESIDUE SO4 A 106' AC7 Software A MG 108 ? 2 'BINDING SITE FOR RESIDUE MG A 108' AC8 Software B SO4 109 ? 4 'BINDING SITE FOR RESIDUE SO4 B 109' AC9 Software A SO4 114 ? 4 'BINDING SITE FOR RESIDUE SO4 A 114' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SO4 F . ? SO4 A 106 . ? 5_445 ? 2 AC1 3 MG H . ? MG A 108 . ? 5_445 ? 3 AC1 3 C B 1 ? C B 1 . ? 1_555 ? 4 AC2 6 G A 10 ? G A 10 . ? 1_555 ? 5 AC2 6 HOH Q . ? HOH A 254 . ? 1_555 ? 6 AC2 6 C B 13 ? C B 13 . ? 1_555 ? 7 AC2 6 A B 14 ? A B 14 . ? 1_555 ? 8 AC2 6 HOH R . ? HOH B 260 . ? 1_555 ? 9 AC2 6 HOH R . ? HOH B 315 . ? 1_555 ? 10 AC3 6 HOH Q . ? HOH A 229 . ? 1_555 ? 11 AC3 6 HOH Q . ? HOH A 254 . ? 1_555 ? 12 AC3 6 HOH Q . ? HOH A 269 . ? 1_555 ? 13 AC3 6 HOH R . ? HOH B 215 . ? 1_555 ? 14 AC3 6 HOH R . ? HOH B 262 . ? 1_555 ? 15 AC3 6 HOH R . ? HOH B 315 . ? 1_555 ? 16 AC4 3 A A 8 ? A A 8 . ? 1_555 ? 17 AC4 3 G A 9 ? G A 9 . ? 1_555 ? 18 AC4 3 A B 8 ? A B 8 . ? 3_656 ? 19 AC5 4 HOH Q . ? HOH A 244 . ? 1_555 ? 20 AC5 4 HOH Q . ? HOH A 272 . ? 1_555 ? 21 AC5 4 HOH Q . ? HOH A 300 . ? 1_555 ? 22 AC5 4 HOH Q . ? HOH A 310 . ? 1_555 ? 23 AC6 2 C A 1 ? C A 1 . ? 1_555 ? 24 AC6 2 SO4 K . ? SO4 B 101 . ? 5_555 ? 25 AC7 2 G A 23 ? G A 23 . ? 1_555 ? 26 AC7 2 SO4 K . ? SO4 B 101 . ? 5_555 ? 27 AC8 4 HOH Q . ? HOH A 291 . ? 3_656 ? 28 AC8 4 A B 8 ? A B 8 . ? 1_555 ? 29 AC8 4 G B 9 ? G B 9 . ? 3_656 ? 30 AC8 4 G B 9 ? G B 9 . ? 1_555 ? 31 AC9 4 G A 10 ? G A 10 . ? 1_555 ? 32 AC9 4 HOH Q . ? HOH A 276 . ? 1_555 ? 33 AC9 4 C B 5 ? C B 5 . ? 1_655 ? 34 AC9 4 A B 16 ? A B 16 . ? 1_555 ? # _database_PDB_matrix.entry_id 2B8S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2B8S _atom_sites.fract_transf_matrix[1][1] 0.036933 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008709 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010593 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 103 103 MG MG A . D 3 SO4 1 104 104 SO4 SO4 A . E 2 MG 1 105 105 MG MG A . F 3 SO4 1 106 106 SO4 SO4 A . G 4 NA 1 107 107 NA NA A . H 2 MG 1 108 108 MG MG A . I 2 MG 1 113 113 MG MG A . J 3 SO4 1 114 114 SO4 SO4 A . K 3 SO4 1 101 101 SO4 SO4 B . L 3 SO4 1 102 102 SO4 SO4 B . M 3 SO4 1 109 109 SO4 SO4 B . N 2 MG 1 110 110 MG MG B . O 4 NA 1 111 111 NA NA B . P 2 MG 1 112 112 MG MG B . Q 5 HOH 1 200 200 HOH HOH A . Q 5 HOH 2 201 201 HOH HOH A . Q 5 HOH 3 202 202 HOH HOH A . Q 5 HOH 4 203 203 HOH HOH A . Q 5 HOH 5 205 205 HOH HOH A . Q 5 HOH 6 206 206 HOH HOH A . Q 5 HOH 7 207 207 HOH HOH A . Q 5 HOH 8 208 208 HOH HOH A . Q 5 HOH 9 210 210 HOH HOH A . Q 5 HOH 10 211 211 HOH HOH A . Q 5 HOH 11 212 212 HOH HOH A . Q 5 HOH 12 216 216 HOH HOH A . Q 5 HOH 13 217 217 HOH HOH A . Q 5 HOH 14 219 219 HOH HOH A . Q 5 HOH 15 220 220 HOH HOH A . Q 5 HOH 16 222 222 HOH HOH A . Q 5 HOH 17 225 225 HOH HOH A . Q 5 HOH 18 228 228 HOH HOH A . Q 5 HOH 19 229 229 HOH HOH A . Q 5 HOH 20 230 230 HOH HOH A . Q 5 HOH 21 231 231 HOH HOH A . Q 5 HOH 22 234 234 HOH HOH A . Q 5 HOH 23 236 236 HOH HOH A . Q 5 HOH 24 238 238 HOH HOH A . Q 5 HOH 25 239 239 HOH HOH A . Q 5 HOH 26 240 240 HOH HOH A . Q 5 HOH 27 242 242 HOH HOH A . Q 5 HOH 28 244 244 HOH HOH A . Q 5 HOH 29 248 248 HOH HOH A . Q 5 HOH 30 249 249 HOH HOH A . Q 5 HOH 31 253 253 HOH HOH A . Q 5 HOH 32 254 254 HOH HOH A . Q 5 HOH 33 255 255 HOH HOH A . Q 5 HOH 34 261 261 HOH HOH A . Q 5 HOH 35 263 263 HOH HOH A . Q 5 HOH 36 268 268 HOH HOH A . Q 5 HOH 37 269 269 HOH HOH A . Q 5 HOH 38 271 271 HOH HOH A . Q 5 HOH 39 272 272 HOH HOH A . Q 5 HOH 40 276 276 HOH HOH A . Q 5 HOH 41 278 278 HOH HOH A . Q 5 HOH 42 279 279 HOH HOH A . Q 5 HOH 43 280 280 HOH HOH A . Q 5 HOH 44 281 281 HOH HOH A . Q 5 HOH 45 285 285 HOH HOH A . Q 5 HOH 46 287 287 HOH HOH A . Q 5 HOH 47 289 289 HOH HOH A . Q 5 HOH 48 291 291 HOH HOH A . Q 5 HOH 49 294 294 HOH HOH A . Q 5 HOH 50 295 295 HOH HOH A . Q 5 HOH 51 296 296 HOH HOH A . Q 5 HOH 52 299 299 HOH HOH A . Q 5 HOH 53 300 300 HOH HOH A . Q 5 HOH 54 305 305 HOH HOH A . Q 5 HOH 55 307 307 HOH HOH A . Q 5 HOH 56 309 309 HOH HOH A . Q 5 HOH 57 310 310 HOH HOH A . Q 5 HOH 58 313 313 HOH HOH A . Q 5 HOH 59 314 314 HOH HOH A . Q 5 HOH 60 317 317 HOH HOH A . Q 5 HOH 61 319 319 HOH HOH A . Q 5 HOH 62 322 322 HOH HOH A . R 5 HOH 1 204 204 HOH HOH B . R 5 HOH 2 209 209 HOH HOH B . R 5 HOH 3 213 213 HOH HOH B . R 5 HOH 4 214 214 HOH HOH B . R 5 HOH 5 215 215 HOH HOH B . R 5 HOH 6 218 218 HOH HOH B . R 5 HOH 7 221 221 HOH HOH B . R 5 HOH 8 223 223 HOH HOH B . R 5 HOH 9 224 224 HOH HOH B . R 5 HOH 10 226 226 HOH HOH B . R 5 HOH 11 227 227 HOH HOH B . R 5 HOH 12 232 232 HOH HOH B . R 5 HOH 13 233 233 HOH HOH B . R 5 HOH 14 235 235 HOH HOH B . R 5 HOH 15 237 237 HOH HOH B . R 5 HOH 16 241 241 HOH HOH B . R 5 HOH 17 243 243 HOH HOH B . R 5 HOH 18 245 245 HOH HOH B . R 5 HOH 19 246 246 HOH HOH B . R 5 HOH 20 247 247 HOH HOH B . R 5 HOH 21 250 250 HOH HOH B . R 5 HOH 22 251 251 HOH HOH B . R 5 HOH 23 252 252 HOH HOH B . R 5 HOH 24 256 256 HOH HOH B . R 5 HOH 25 257 257 HOH HOH B . R 5 HOH 26 258 258 HOH HOH B . R 5 HOH 27 259 259 HOH HOH B . R 5 HOH 28 260 260 HOH HOH B . R 5 HOH 29 262 262 HOH HOH B . R 5 HOH 30 264 264 HOH HOH B . R 5 HOH 31 266 266 HOH HOH B . R 5 HOH 32 270 270 HOH HOH B . R 5 HOH 33 273 273 HOH HOH B . R 5 HOH 34 274 274 HOH HOH B . R 5 HOH 35 277 277 HOH HOH B . R 5 HOH 36 282 282 HOH HOH B . R 5 HOH 37 286 286 HOH HOH B . R 5 HOH 38 288 288 HOH HOH B . R 5 HOH 39 290 290 HOH HOH B . R 5 HOH 40 292 292 HOH HOH B . R 5 HOH 41 293 293 HOH HOH B . R 5 HOH 42 297 297 HOH HOH B . R 5 HOH 43 298 298 HOH HOH B . R 5 HOH 44 302 302 HOH HOH B . R 5 HOH 45 303 303 HOH HOH B . R 5 HOH 46 306 306 HOH HOH B . R 5 HOH 47 315 315 HOH HOH B . R 5 HOH 48 316 316 HOH HOH B . R 5 HOH 49 318 318 HOH HOH B . R 5 HOH 50 320 320 HOH HOH B . R 5 HOH 51 321 321 HOH HOH B . R 5 HOH 52 323 323 HOH HOH B . R 5 HOH 53 324 324 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? Q HOH . ? A HOH 254 ? 1_555 84.2 ? 2 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? Q HOH . ? A HOH 269 ? 1_555 93.5 ? 3 O ? Q HOH . ? A HOH 254 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? Q HOH . ? A HOH 269 ? 1_555 91.7 ? 4 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 77.4 ? 5 O ? Q HOH . ? A HOH 254 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 160.9 ? 6 O ? Q HOH . ? A HOH 269 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 215 ? 1_555 94.5 ? 7 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 262 ? 1_555 77.2 ? 8 O ? Q HOH . ? A HOH 254 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 262 ? 1_555 87.2 ? 9 O ? Q HOH . ? A HOH 269 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 262 ? 1_555 170.7 ? 10 O ? R HOH . ? B HOH 215 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 262 ? 1_555 83.8 ? 11 O ? Q HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 315 ? 1_555 152.6 ? 12 O ? Q HOH . ? A HOH 254 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 315 ? 1_555 97.1 ? 13 O ? Q HOH . ? A HOH 269 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 315 ? 1_555 113.8 ? 14 O ? R HOH . ? B HOH 215 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 315 ? 1_555 96.8 ? 15 O ? R HOH . ? B HOH 262 ? 1_555 MG ? C MG . ? A MG 103 ? 1_555 O ? R HOH . ? B HOH 315 ? 1_555 75.5 ? 16 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? E MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 272 ? 1_555 87.2 ? 17 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? E MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 300 ? 1_555 120.0 ? 18 O ? Q HOH . ? A HOH 272 ? 1_555 MG ? E MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 300 ? 1_555 88.9 ? 19 O ? Q HOH . ? A HOH 244 ? 1_555 MG ? E MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 310 ? 1_555 154.6 ? 20 O ? Q HOH . ? A HOH 272 ? 1_555 MG ? E MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 310 ? 1_555 78.5 ? 21 O ? Q HOH . ? A HOH 300 ? 1_555 MG ? E MG . ? A MG 105 ? 1_555 O ? Q HOH . ? A HOH 310 ? 1_555 81.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 9 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.068 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 NA NA NA N N 115 SO4 S S N N 116 SO4 O1 O N N 117 SO4 O2 O N N 118 SO4 O3 O N N 119 SO4 O4 O N N 120 U OP3 O N N 121 U P P N N 122 U OP1 O N N 123 U OP2 O N N 124 U "O5'" O N N 125 U "C5'" C N N 126 U "C4'" C N R 127 U "O4'" O N N 128 U "C3'" C N S 129 U "O3'" O N N 130 U "C2'" C N R 131 U "O2'" O N N 132 U "C1'" C N R 133 U N1 N N N 134 U C2 C N N 135 U O2 O N N 136 U N3 N N N 137 U C4 C N N 138 U O4 O N N 139 U C5 C N N 140 U C6 C N N 141 U HOP3 H N N 142 U HOP2 H N N 143 U "H5'" H N N 144 U "H5''" H N N 145 U "H4'" H N N 146 U "H3'" H N N 147 U "HO3'" H N N 148 U "H2'" H N N 149 U "HO2'" H N N 150 U "H1'" H N N 151 U H3 H N N 152 U H5 H N N 153 U H6 H N N 154 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SO4 S O1 doub N N 118 SO4 S O2 doub N N 119 SO4 S O3 sing N N 120 SO4 S O4 sing N N 121 U OP3 P sing N N 122 U OP3 HOP3 sing N N 123 U P OP1 doub N N 124 U P OP2 sing N N 125 U P "O5'" sing N N 126 U OP2 HOP2 sing N N 127 U "O5'" "C5'" sing N N 128 U "C5'" "C4'" sing N N 129 U "C5'" "H5'" sing N N 130 U "C5'" "H5''" sing N N 131 U "C4'" "O4'" sing N N 132 U "C4'" "C3'" sing N N 133 U "C4'" "H4'" sing N N 134 U "O4'" "C1'" sing N N 135 U "C3'" "O3'" sing N N 136 U "C3'" "C2'" sing N N 137 U "C3'" "H3'" sing N N 138 U "O3'" "HO3'" sing N N 139 U "C2'" "O2'" sing N N 140 U "C2'" "C1'" sing N N 141 U "C2'" "H2'" sing N N 142 U "O2'" "HO2'" sing N N 143 U "C1'" N1 sing N N 144 U "C1'" "H1'" sing N N 145 U N1 C2 sing N N 146 U N1 C6 sing N N 147 U C2 O2 doub N N 148 U C2 N3 sing N N 149 U N3 C4 sing N N 150 U N3 H3 sing N N 151 U C4 O4 doub N N 152 U C4 C5 sing N N 153 U C5 C6 doub N N 154 U C5 H5 sing N N 155 U C6 H6 sing N N 156 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2B8S 'double helix' 2B8S 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 23 1_555 -0.057 -0.258 -0.015 11.365 -15.972 0.164 1 A_C1:G23_A A 1 ? A 23 ? 19 1 1 A U 2 1_555 A A 22 1_555 -0.013 -0.192 0.195 0.490 -18.152 0.872 2 A_U2:A22_A A 2 ? A 22 ? 20 1 1 A U 3 1_555 A A 21 1_555 -0.019 -0.287 0.219 2.388 -9.174 -2.794 3 A_U3:A21_A A 3 ? A 21 ? 20 1 1 A G 4 1_555 A C 20 1_555 -0.030 0.042 -0.184 -3.243 -10.015 5.955 4 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A C 5 1_555 A G 19 1_555 0.304 -0.075 0.022 0.816 -11.549 4.817 5 A_C5:G19_A A 5 ? A 19 ? 19 1 1 A U 6 1_555 A A 18 1_555 -0.003 -0.350 0.218 -2.708 -12.920 1.279 6 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 7 1_555 A C 17 1_555 -0.455 -0.243 -0.139 -0.717 -9.896 3.994 7 A_G7:C17_A A 7 ? A 17 ? 19 1 1 B C 1 1_555 B G 23 1_555 -0.262 -0.270 0.118 6.356 -17.747 -1.071 8 B_C1:G23_B B 1 ? B 23 ? 19 1 1 B U 2 1_555 B A 22 1_555 -0.359 -0.152 0.416 0.388 -12.111 0.173 9 B_U2:A22_B B 2 ? B 22 ? 20 1 1 B U 3 1_555 B A 21 1_555 -0.176 0.013 0.148 4.127 -10.131 7.119 10 B_U3:A21_B B 3 ? B 21 ? 20 1 1 B G 4 1_555 B C 20 1_555 -0.473 -0.102 -0.137 -4.201 -16.582 6.519 11 B_G4:C20_B B 4 ? B 20 ? 19 1 1 B C 5 1_555 B G 19 1_555 0.523 -0.178 -0.057 0.529 -10.788 2.600 12 B_C5:G19_B B 5 ? B 19 ? 19 1 1 B U 6 1_555 B A 18 1_555 0.469 -0.186 0.072 -0.741 -10.160 7.967 13 B_U6:A18_B B 6 ? B 18 ? 20 1 1 B G 7 1_555 B C 17 1_555 -0.162 -0.276 -0.020 0.207 -8.053 1.916 14 B_G7:C17_B B 7 ? B 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.369 -0.020 -0.189 -18.729 -11.891 2.020 15 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.132 -0.242 0.486 -7.045 -12.087 2.149 16 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.134 -0.215 0.042 -1.314 -6.855 -2.109 17 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.308 -0.163 -0.012 4.675 -7.143 0.685 18 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.372 -0.134 0.126 10.617 -10.510 0.431 19 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.411 0.069 -0.389 19.524 -11.707 5.633 20 A_C15:G10_B A 15 ? B 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 23 1_555 A U 2 1_555 A A 22 1_555 -0.331 -1.652 3.400 -4.227 9.394 36.150 -3.775 -0.030 2.915 14.772 6.648 37.542 1 AA_C1U2:A22G23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A U 2 1_555 A A 22 1_555 A U 3 1_555 A A 21 1_555 -0.381 -1.221 3.156 -1.687 5.684 34.491 -2.836 0.395 2.938 9.498 2.819 34.981 2 AA_U2U3:A21A22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A U 3 1_555 A A 21 1_555 A G 4 1_555 A C 20 1_555 0.137 -1.578 3.295 2.363 12.317 27.589 -5.295 0.174 2.391 24.299 -4.661 30.255 3 AA_U3G4:C20A21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 1_555 A C 5 1_555 A G 19 1_555 0.094 -1.153 3.096 -1.242 4.386 34.208 -2.573 -0.337 2.925 7.415 2.100 34.502 4 AA_G4C5:G19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A C 5 1_555 A G 19 1_555 A U 6 1_555 A A 18 1_555 0.239 -1.679 3.226 -0.288 7.507 30.290 -4.446 -0.494 2.738 14.096 0.541 31.186 5 AA_C5U6:A18G19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 7 1_555 A C 17 1_555 0.320 -1.651 3.019 4.753 19.161 26.303 -5.488 0.068 1.532 36.307 -9.007 32.783 6 AA_U6G7:C17A18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 B C 1 1_555 B G 23 1_555 B U 2 1_555 B A 22 1_555 -0.268 -1.857 3.289 -6.000 10.535 32.615 -4.607 -0.405 2.591 18.002 10.253 34.738 7 BB_C1U2:A22G23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B U 2 1_555 B A 22 1_555 B U 3 1_555 B A 21 1_555 0.226 -1.332 3.182 0.335 1.873 32.491 -2.691 -0.346 3.105 3.344 -0.598 32.545 8 BB_U2U3:A21A22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B U 3 1_555 B A 21 1_555 B G 4 1_555 B C 20 1_555 -0.159 -1.251 3.157 0.607 17.505 31.146 -4.267 0.337 2.168 29.830 -1.035 35.626 9 BB_U3G4:C20A21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B G 4 1_555 B C 20 1_555 B C 5 1_555 B G 19 1_555 -0.237 -1.264 3.147 -4.273 3.458 36.444 -2.445 -0.175 3.027 5.490 6.784 36.843 10 BB_G4C5:G19C20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B C 5 1_555 B G 19 1_555 B U 6 1_555 B A 18 1_555 0.346 -1.582 3.161 1.422 8.013 32.164 -4.001 -0.388 2.711 14.182 -2.517 33.152 11 BB_C5U6:A18G19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B U 6 1_555 B A 18 1_555 B G 7 1_555 B C 17 1_555 -0.120 -1.560 3.055 3.260 17.751 24.944 -5.695 0.731 1.592 35.731 -6.562 30.704 12 BB_U6G7:C17A18_BB B 6 ? B 18 ? B 7 ? B 17 ? 1 B G 7 1_555 B C 17 1_555 A G 10 1_555 B C 15 1_555 -2.046 -3.114 6.465 -7.810 18.353 84.170 -3.077 1.160 5.961 13.527 5.756 86.070 13 BA_G7G10:C15C17_BB B 7 ? B 17 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.575 -1.434 2.961 -6.215 -0.090 33.900 -2.408 0.080 3.020 -0.153 10.548 34.449 14 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 -0.686 -1.484 2.924 2.457 8.397 28.881 -4.262 1.731 2.344 16.368 -4.789 30.150 15 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 0.040 -0.812 3.195 -0.413 10.179 33.424 -2.808 -0.125 2.834 17.207 0.698 34.900 16 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.006 -1.437 3.083 0.936 10.265 30.610 -4.182 0.134 2.483 18.787 -1.713 32.260 17 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.546 -1.070 3.049 2.642 5.257 31.062 -2.853 -0.556 2.869 9.707 -4.878 31.601 18 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SULFATE ION' SO4 4 'SODIUM ION' NA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JJM _pdbx_initial_refinement_model.details 'pdb entry 1JJM' #