HEADER TRANSFERASE 11-OCT-05 2B99 TITLE CRYSTAL STRUCTURE OF AN ARCHAEAL PENTAMERIC RIBOFLAVIN SYNTHASE TITLE 2 COMPLEX WITH A SUBSTRATE ANALOG INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN SYNTHASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: RIBOFLAVIN SYNTHASE; COMPND 5 EC: 2.5.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: RIBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNCO113 KEYWDS LUMAZINE RIBOFLAVIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RAMSPERGER,M.AUGUSTIN,A.K.SCHOTT,S.GERHARDT,T.KROJER,W.EISENREICH, AUTHOR 2 B.ILLARIONOV,M.CUSHMAN,A.BACHER,R.HUBER,M.FISCHER REVDAT 4 14-FEB-24 2B99 1 REMARK REVDAT 3 24-FEB-09 2B99 1 VERSN REVDAT 2 24-JAN-06 2B99 1 JRNL REVDAT 1 08-NOV-05 2B99 0 JRNL AUTH A.RAMSPERGER,M.AUGUSTIN,A.K.SCHOTT,S.GERHARDT,T.KROJER, JRNL AUTH 2 W.EISENREICH,B.ILLARIONOV,M.CUSHMAN,A.BACHER,R.HUBER, JRNL AUTH 3 M.FISCHER JRNL TITL CRYSTAL STRUCTURE OF AN ARCHAEAL PENTAMERIC RIBOFLAVIN JRNL TITL 2 SYNTHASE IN COMPLEX WITH A SUBSTRATE ANALOG INHIBITOR: JRNL TITL 3 STEREOCHEMICAL IMPLICATIONS JRNL REF J.BIOL.CHEM. V. 281 1224 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16272154 JRNL DOI 10.1074/JBC.M509440200 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 958644.590 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 34789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1741 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5200 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 230 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.14000 REMARK 3 B22 (A**2) : 6.78000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : -1.32000 REMARK 3 B13 (A**2) : -2.25000 REMARK 3 B23 (A**2) : -3.55000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 75.31 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : RDL.PARA REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : RDL.TOPO REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, AND 40% MPD., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A PENTAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 148 REMARK 465 GLU A 149 REMARK 465 ASP A 150 REMARK 465 ALA A 151 REMARK 465 GLY A 152 REMARK 465 PRO A 153 REMARK 465 ALA A 154 REMARK 465 ARG A 155 REMARK 465 GLU A 156 REMARK 465 MET B 1 REMARK 465 ARG B 145 REMARK 465 GLN B 146 REMARK 465 GLY B 147 REMARK 465 PHE B 148 REMARK 465 GLU B 149 REMARK 465 ASP B 150 REMARK 465 ALA B 151 REMARK 465 GLY B 152 REMARK 465 PRO B 153 REMARK 465 ALA B 154 REMARK 465 ARG B 155 REMARK 465 GLU B 156 REMARK 465 MET C 1 REMARK 465 ALA C 154 REMARK 465 ARG C 155 REMARK 465 GLU C 156 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 LEU D 144 REMARK 465 ARG D 145 REMARK 465 GLN D 146 REMARK 465 GLY D 147 REMARK 465 PHE D 148 REMARK 465 GLU D 149 REMARK 465 ASP D 150 REMARK 465 ALA D 151 REMARK 465 GLY D 152 REMARK 465 PRO D 153 REMARK 465 ALA D 154 REMARK 465 ARG D 155 REMARK 465 GLU D 156 REMARK 465 MET E 1 REMARK 465 ALA E 154 REMARK 465 ARG E 155 REMARK 465 GLU E 156 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 2 CB OG1 CG2 REMARK 480 ILE A 20 CG1 CG2 CD1 REMARK 480 LYS A 23 CB CG CD CE NZ REMARK 480 LYS A 26 CE NZ REMARK 480 LYS A 33 CG CD CE NZ REMARK 480 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 69 CB CG CD CE NZ REMARK 480 GLU A 71 CG CD OE1 OE2 REMARK 480 LYS A 72 CG CD CE NZ REMARK 480 LYS A 74 CB CG CD CE NZ REMARK 480 LEU A 86 CD1 CD2 REMARK 480 LYS A 132 CB CG CD CE NZ REMARK 480 GLU A 134 CB CG CD OE1 OE2 REMARK 480 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 480 THR B 2 CB OG1 CG2 REMARK 480 LYS B 3 CD CE NZ REMARK 480 ILE B 20 CG1 CD1 REMARK 480 LYS B 23 CG CD CE NZ REMARK 480 LYS B 24 CG CD CE NZ REMARK 480 LYS B 26 CD CE NZ REMARK 480 ASN B 31 CB CG OD1 ND2 REMARK 480 LYS B 33 CG CD CE NZ REMARK 480 LYS B 37 CE NZ REMARK 480 LYS B 69 CG CD CE NZ REMARK 480 GLU B 71 CD OE1 OE2 REMARK 480 LYS B 72 CG CD CE NZ REMARK 480 LEU B 86 CD1 CD2 REMARK 480 ASP B 108 CG OD1 OD2 REMARK 480 GLU B 110 CG CD OE1 OE2 REMARK 480 ARG B 117 CD NE CZ NH1 NH2 REMARK 480 ARG B 118 CD NE CZ NH1 NH2 REMARK 480 LYS B 132 CD CE NZ REMARK 480 GLU B 134 CB CG CD OE1 OE2 REMARK 480 THR C 2 N CB OG1 CG2 REMARK 480 LYS C 3 CG CD CE NZ REMARK 480 LYS C 23 CD CE NZ REMARK 480 LYS C 24 CE NZ REMARK 480 LYS C 26 CD CE NZ REMARK 480 LYS C 37 CG CD CE NZ REMARK 480 LYS C 69 CD CE NZ REMARK 480 LYS C 72 CG CD CE NZ REMARK 480 LYS C 74 CE NZ REMARK 480 GLU C 104 CB CG CD OE1 OE2 REMARK 480 LYS C 109 CD CE NZ REMARK 480 GLU C 124 CD OE1 OE2 REMARK 480 GLU C 134 CG CD OE1 OE2 REMARK 480 ARG C 138 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 23 CG CD CE NZ REMARK 480 LYS D 37 CG CD CE NZ REMARK 480 GLU D 71 CB CG CD OE1 OE2 REMARK 480 LYS D 72 CB CG CD CE NZ REMARK 480 LYS D 74 CD CE NZ REMARK 480 LEU D 82 CD1 CD2 REMARK 480 ASP D 103 OD1 OD2 REMARK 480 LYS D 109 CG CD CE NZ REMARK 480 LYS D 116 CE NZ REMARK 480 ARG D 117 CZ NH1 NH2 REMARK 480 LYS D 132 CG CD CE NZ REMARK 480 GLU D 134 CG CD OE1 OE2 REMARK 480 ARG D 138 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 142 CD CE NZ REMARK 480 THR E 2 CG2 REMARK 480 LYS E 23 CD CE NZ REMARK 480 LYS E 26 CE NZ REMARK 480 ASN E 31 CG OD1 ND2 REMARK 480 LYS E 33 CG CD CE NZ REMARK 480 LYS E 37 CD CE NZ REMARK 480 LYS E 69 CD CE NZ REMARK 480 LYS E 72 CB CG CD CE NZ REMARK 480 LYS E 74 CG CD CE NZ REMARK 480 GLU E 104 CG CD OE1 OE2 REMARK 480 LYS E 106 CG CD CE NZ REMARK 480 LYS E 132 CG CD CE NZ REMARK 480 GLU E 134 CG CD OE1 OE2 REMARK 480 ARG E 138 CG CD NE CZ NH1 NH2 REMARK 480 GLU E 149 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA C 119 O HOH C 1248 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 14 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG B 14 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG B 117 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 117 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 138 CD - NE - CZ ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 138 NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG B 138 NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG C 14 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG C 14 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG C 117 CB - CG - CD ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG C 117 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 117 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG C 118 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG C 118 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG D 14 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG D 14 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG D 117 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG D 117 NE - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG D 118 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 118 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG E 14 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG E 14 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG E 117 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG E 117 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG E 118 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG E 118 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 145 -77.74 -162.98 REMARK 500 GLN A 146 8.38 -162.84 REMARK 500 SER B 29 81.81 -150.86 REMARK 500 ALA B 70 156.07 -49.49 REMARK 500 LYS B 142 -136.95 33.63 REMARK 500 ALA C 70 154.72 -35.02 REMARK 500 ALA D 70 159.69 -45.06 REMARK 500 LYS E 3 120.37 77.40 REMARK 500 LYS E 69 -71.09 -62.18 REMARK 500 ALA E 70 143.82 -23.99 REMARK 500 GLU E 149 152.91 -45.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 RDL B 1206 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL E 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL D 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL C 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL E 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL B 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RDL B 1210 DBREF 2B99 A 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B99 B 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B99 C 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B99 D 1 156 UNP Q58584 RISC_METJA 1 156 DBREF 2B99 E 1 156 UNP Q58584 RISC_METJA 1 156 SEQRES 1 A 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 A 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 A 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 A 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 A 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 A 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 A 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 A 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 A 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 A 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 A 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 A 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 B 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 B 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 B 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 B 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 B 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 B 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 B 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 B 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 B 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 B 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 B 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 B 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 C 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 C 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 C 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 C 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 C 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 C 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 C 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 C 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 C 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 C 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 C 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 C 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 D 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 D 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 D 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 D 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 D 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 D 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 D 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 D 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 D 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 D 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 D 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 D 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU SEQRES 1 E 156 MET THR LYS LYS VAL GLY ILE VAL ASP THR THR PHE ALA SEQRES 2 E 156 ARG VAL ASP MET ALA SER ILE ALA ILE LYS LYS LEU LYS SEQRES 3 E 156 GLU LEU SER PRO ASN ILE LYS ILE ILE ARG LYS THR VAL SEQRES 4 E 156 PRO GLY ILE LYS ASP LEU PRO VAL ALA CYS LYS LYS LEU SEQRES 5 E 156 LEU GLU GLU GLU GLY CYS ASP ILE VAL MET ALA LEU GLY SEQRES 6 E 156 MET PRO GLY LYS ALA GLU LYS ASP LYS VAL CYS ALA HIS SEQRES 7 E 156 GLU ALA SER LEU GLY LEU MET LEU ALA GLN LEU MET THR SEQRES 8 E 156 ASN LYS HIS ILE ILE GLU VAL PHE VAL HIS GLU ASP GLU SEQRES 9 E 156 ALA LYS ASP ASP LYS GLU LEU ASP TRP LEU ALA LYS ARG SEQRES 10 E 156 ARG ALA GLU GLU HIS ALA GLU ASN VAL TYR TYR LEU LEU SEQRES 11 E 156 PHE LYS PRO GLU TYR LEU THR ARG MET ALA GLY LYS GLY SEQRES 12 E 156 LEU ARG GLN GLY PHE GLU ASP ALA GLY PRO ALA ARG GLU HET RDL A1205 23 HET RDL A1208 23 HET RDL B1206 23 HET RDL B1209 23 HET RDL B1210 23 HET RDL C1201 23 HET RDL C1204 23 HET RDL D1203 23 HET RDL E1202 23 HET RDL E1207 23 HETNAM RDL 6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE FORMUL 6 RDL 10(C11 H14 N4 O8) FORMUL 16 HOH *207(H2 O) HELIX 1 1 MET A 17 SER A 29 1 13 HELIX 2 2 GLY A 41 LYS A 43 5 3 HELIX 3 3 ASP A 44 GLU A 56 1 13 HELIX 4 4 ALA A 70 ASN A 92 1 23 HELIX 5 5 HIS A 101 ALA A 105 5 5 HELIX 6 6 ASP A 107 LYS A 132 1 26 HELIX 7 7 LYS A 132 MET A 139 1 8 HELIX 8 8 MET B 17 SER B 29 1 13 HELIX 9 9 GLY B 41 LYS B 43 5 3 HELIX 10 10 ASP B 44 GLU B 56 1 13 HELIX 11 11 ALA B 70 ASN B 92 1 23 HELIX 12 12 HIS B 101 ALA B 105 5 5 HELIX 13 13 ASP B 107 LYS B 132 1 26 HELIX 14 14 LYS B 132 MET B 139 1 8 HELIX 15 15 MET C 17 SER C 29 1 13 HELIX 16 16 GLY C 41 LYS C 43 5 3 HELIX 17 17 ASP C 44 GLU C 56 1 13 HELIX 18 18 ALA C 70 ASN C 92 1 23 HELIX 19 19 HIS C 101 ALA C 105 5 5 HELIX 20 20 ASP C 107 LYS C 132 1 26 HELIX 21 21 LYS C 132 MET C 139 1 8 HELIX 22 22 MET D 17 SER D 29 1 13 HELIX 23 23 GLY D 41 LYS D 43 5 3 HELIX 24 24 ASP D 44 GLU D 56 1 13 HELIX 25 25 LYS D 72 ASN D 92 1 21 HELIX 26 26 HIS D 101 ALA D 105 5 5 HELIX 27 27 ASP D 107 LYS D 132 1 26 HELIX 28 28 LYS D 132 MET D 139 1 8 HELIX 29 29 MET E 17 SER E 29 1 13 HELIX 30 30 GLY E 41 LYS E 43 5 3 HELIX 31 31 ASP E 44 GLU E 56 1 13 HELIX 32 32 ALA E 70 ASN E 92 1 23 HELIX 33 33 HIS E 101 ALA E 105 5 5 HELIX 34 34 ASP E 107 LYS E 132 1 26 HELIX 35 35 LYS E 132 MET E 139 1 8 SHEET 1 A 4 LYS A 33 VAL A 39 0 SHEET 2 A 4 LYS A 4 THR A 10 1 N VAL A 5 O LYS A 33 SHEET 3 A 4 ILE A 60 GLY A 65 1 O LEU A 64 N VAL A 8 SHEET 4 A 4 ILE A 95 PHE A 99 1 O VAL A 98 N ALA A 63 SHEET 1 B 4 LYS B 33 VAL B 39 0 SHEET 2 B 4 LYS B 4 THR B 10 1 N ILE B 7 O ILE B 35 SHEET 3 B 4 ILE B 60 GLY B 65 1 O LEU B 64 N VAL B 8 SHEET 4 B 4 ILE B 95 PHE B 99 1 O VAL B 98 N ALA B 63 SHEET 1 C 4 LYS C 33 VAL C 39 0 SHEET 2 C 4 LYS C 4 THR C 10 1 N VAL C 5 O LYS C 33 SHEET 3 C 4 ILE C 60 GLY C 65 1 O LEU C 64 N VAL C 8 SHEET 4 C 4 ILE C 95 PHE C 99 1 O VAL C 98 N ALA C 63 SHEET 1 D 4 LYS D 33 VAL D 39 0 SHEET 2 D 4 LYS D 4 THR D 10 1 N ILE D 7 O ILE D 35 SHEET 3 D 4 ILE D 60 GLY D 65 1 O LEU D 64 N VAL D 8 SHEET 4 D 4 ILE D 95 PHE D 99 1 O VAL D 98 N ALA D 63 SHEET 1 E 4 LYS E 33 VAL E 39 0 SHEET 2 E 4 LYS E 4 THR E 10 1 N VAL E 5 O LYS E 33 SHEET 3 E 4 ILE E 60 GLY E 65 1 O LEU E 64 N VAL E 8 SHEET 4 E 4 ILE E 95 PHE E 99 1 O VAL E 98 N ALA E 63 SITE 1 AC1 15 PHE C 12 GLY C 41 ILE C 42 LYS C 43 SITE 2 AC1 15 ASP C 44 MET C 66 PRO C 67 GLY C 68 SITE 3 AC1 15 ASP C 73 CYS C 76 HOH C1217 ILE E 96 SITE 4 AC1 15 GLU E 97 HIS E 122 RDL E1202 SITE 1 AC2 8 PHE C 12 ASP C 73 RDL C1201 PHE E 99 SITE 2 AC2 8 ARG E 118 HIS E 122 ARG E 145 GLN E 146 SITE 1 AC3 19 ILE C 96 GLU C 97 HIS C 122 GLN C 146 SITE 2 AC3 19 RDL C1204 PHE D 12 PRO D 40 GLY D 41 SITE 3 AC3 19 ILE D 42 LYS D 43 ASP D 44 MET D 66 SITE 4 AC3 19 PRO D 67 GLY D 68 ASP D 73 CYS D 76 SITE 5 AC3 19 HOH D1204 HOH D1208 HOH D1209 SITE 1 AC4 9 PHE C 99 HIS C 101 ARG C 118 HIS C 122 SITE 2 AC4 9 ARG C 145 GLN C 146 HOH C1205 ASP D 73 SITE 3 AC4 9 RDL D1203 SITE 1 AC5 14 PHE A 12 GLY A 41 ILE A 42 LYS A 43 SITE 2 AC5 14 ASP A 44 MET A 66 PRO A 67 GLY A 68 SITE 3 AC5 14 ASP A 73 CYS A 76 HOH A1223 ILE B 96 SITE 4 AC5 14 GLU B 97 HIS B 122 SITE 1 AC6 15 ILE A 96 GLU A 97 HIS A 122 RDL A1208 SITE 2 AC6 15 PHE E 12 GLY E 41 ILE E 42 LYS E 43 SITE 3 AC6 15 ASP E 44 MET E 66 PRO E 67 GLY E 68 SITE 4 AC6 15 ASP E 73 CYS E 76 HOH E1216 SITE 1 AC7 8 PHE A 99 GLU A 104 ARG A 118 HIS A 122 SITE 2 AC7 8 ARG A 145 PHE E 12 ASP E 73 RDL E1207 SITE 1 AC8 7 PHE B 12 ASP B 73 RDL B1210 PHE D 99 SITE 2 AC8 7 GLU D 104 ARG D 118 HIS D 122 SITE 1 AC9 15 PHE B 12 GLY B 41 ILE B 42 LYS B 43 SITE 2 AC9 15 ASP B 44 MET B 66 PRO B 67 GLY B 68 SITE 3 AC9 15 ASP B 73 CYS B 76 RDL B1209 HOH B1222 SITE 4 AC9 15 ILE D 96 GLU D 97 HIS D 122 CRYST1 41.940 72.912 72.782 68.50 74.39 74.53 P 1 5 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023844 -0.006599 -0.004816 0.00000 SCALE2 0.000000 0.014231 -0.004765 0.00000 SCALE3 0.000000 0.000000 0.015044 0.00000