HEADER CONTRACTILE PROTEIN 11-OCT-05 2B9C TITLE STRUCTURE OF TROPOMYOSIN'S MID-REGION: BENDING AND BINDING SITES FOR TITLE 2 ACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRIATED-MUSCLE ALPHA TROPOMYOSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-HELIX, COILED COIL, ALANINE, AXIAL STAGGER, RADIUS, SIDE-CHAIN KEYWDS 2 PACKING, CRYSTAL PACKING, TEMPERATURE FACTOR, CARDIOMYOPATHY, KEYWDS 3 ELONGATED PROTEIN, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.BROWN,Z.ZHOU,L.RESHETNIKOVA,H.ROBINSON,R.D.YAMMANI,L.S.TOBACMAN, AUTHOR 2 C.COHEN REVDAT 7 30-OCT-24 2B9C 1 REMARK REVDAT 6 21-DEC-22 2B9C 1 SEQADV REVDAT 5 11-OCT-17 2B9C 1 REMARK REVDAT 4 24-FEB-09 2B9C 1 VERSN REVDAT 3 08-MAY-07 2B9C 1 REMARK REVDAT 2 17-JAN-06 2B9C 1 JRNL REVDAT 1 03-JAN-06 2B9C 0 JRNL AUTH J.H.BROWN,Z.ZHOU,L.RESHETNIKOVA,H.ROBINSON,R.D.YAMMANI, JRNL AUTH 2 L.S.TOBACMAN,C.COHEN JRNL TITL STRUCTURE OF THE MID-REGION OF TROPOMYOSIN: BENDING AND JRNL TITL 2 BINDING SITES FOR ACTIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 18878 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16365313 JRNL DOI 10.1073/PNAS.0509269102 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 17760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2194 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.75900 REMARK 3 B22 (A**2) : 3.75900 REMARK 3 B33 (A**2) : -7.51800 REMARK 3 B12 (A**2) : -7.57900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.051 REMARK 3 BOND ANGLES (DEGREES) : 3.866 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 103.2 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; NSLS REMARK 200 BEAMLINE : F1; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9474; 0.9786, 0.9793, 0.9611 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18253 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE: THREE MICROLITERS OF PROTEIN REMARK 280 SOLUTION [6.35MG/ML MIDTM; 20MM TRIS-HCL PH7.0; 100MM NACL; 2MM REMARK 280 2-MERCAPTOETHANOL AND 2MM NAN3] WERE COMBINED WITH TWO REMARK 280 MICROLITERS OF 14% PEG2K-MME, AND THE RESULTANT DROP WAS REMARK 280 EQUILIBRATED AGAINST 1ML RESERVOIR SOLUTION [7.5% PEG2K-MME; REMARK 280 120MM NACL; 24MM TRIS-HCL PH7.0] BY VAPOR DIFFUSION AT 16 C. SE- REMARK 280 MET: TWO MICROLITERS OF PROTEIN SOLUTION [18MG/ML MIDTM; 20MM REMARK 280 TRIS-HCL PH6.9; 100MM NACL; 10MM MERCAPTOETHANOL AND 2MM NAN3] REMARK 280 WERE COMBINED WITH TWO MICROLITERS OF PRECIPITANT SOLUTION [28- REMARK 280 32% PEG2K-MME; 50MM NACL; 20MM TRIS-HCL PH6.9 AND 5MM REMARK 280 MERCAPTOETHANOL]. THE RESULTANT MIXTURE WAS EQUILIBRATED AGAINST REMARK 280 1ML RESERVOIR SOLUTION [24% PEG2K-MME; 50MM NACL; 20MM TRIS-HCL REMARK 280 PH6.9 AND 5MM MERCAPTOETHANOL] BY VAPOR DIFFUSION AT 16C. , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.96867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.48433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.22650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.74217 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.71083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 88 REMARK 465 ASN A 89 REMARK 465 ARG A 90 REMARK 465 ARG A 91 REMARK 465 ILE A 92 REMARK 465 GLN A 93 REMARK 465 LEU A 94 REMARK 465 VAL A 95 REMARK 465 GLU A 96 REMARK 465 GLU A 97 REMARK 465 GLU A 234 REMARK 465 MET B 1088 REMARK 465 ASN B 1089 REMARK 465 ARG B 1090 REMARK 465 ARG B 1091 REMARK 465 ILE B 1092 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 GLU B1104 CG CD OE1 OE2 REMARK 470 ASP B1121 CG OD1 OD2 REMARK 470 ARG B1125 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1136 CG CD CE NZ REMARK 470 ILE B1143 CG1 CG2 CD1 REMARK 470 GLU B1213 CG CD OE1 OE2 REMARK 470 LEU B1228 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 1229 OXT GLU B 1234 1.91 REMARK 500 O HOH B 91 O HOH B 228 2.09 REMARK 500 O HOH B 30 O HOH B 112 2.15 REMARK 500 O ILE B 1143 N ILE B 1146 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 127 CG MET A 127 SD 0.182 REMARK 500 GLU A 139 CD GLU A 139 OE1 0.084 REMARK 500 GLU A 156 CB GLU A 156 CG 0.123 REMARK 500 TYR A 162 CA TYR A 162 CB -0.144 REMARK 500 TYR A 162 CD1 TYR A 162 CE1 0.204 REMARK 500 TYR A 162 CZ TYR A 162 CE2 -0.161 REMARK 500 TYR A 162 CE2 TYR A 162 CD2 0.197 REMARK 500 GLU A 163 CD GLU A 163 OE1 0.087 REMARK 500 GLU A 163 CD GLU A 163 OE2 0.101 REMARK 500 GLU A 164 CD GLU A 164 OE1 0.084 REMARK 500 ALA A 166 N ALA A 166 CA -0.150 REMARK 500 ARG A 167 CG ARG A 167 CD 0.165 REMARK 500 ARG A 167 CG ARG A 167 CD 0.171 REMARK 500 ARG A 167 CZ ARG A 167 NH2 -0.128 REMARK 500 LEU A 169 CA LEU A 169 C -0.164 REMARK 500 ILE A 171 CA ILE A 171 CB -0.170 REMARK 500 ILE A 172 CA ILE A 172 CB -0.144 REMARK 500 ILE A 172 CB ILE A 172 CG2 -0.230 REMARK 500 GLU A 173 CG GLU A 173 CD 0.154 REMARK 500 SER A 174 CA SER A 174 CB 0.133 REMARK 500 ASP A 175 CB ASP A 175 CG 0.135 REMARK 500 ASP A 175 CG ASP A 175 OD2 0.166 REMARK 500 GLU A 177 CB GLU A 177 CG 0.130 REMARK 500 ARG A 178 CZ ARG A 178 NH1 0.142 REMARK 500 GLU A 180 CD GLU A 180 OE1 0.079 REMARK 500 GLU A 181 N GLU A 181 CA -0.124 REMARK 500 GLU A 181 CG GLU A 181 CD 0.201 REMARK 500 GLU A 181 CD GLU A 181 OE1 0.082 REMARK 500 ARG A 182 CA ARG A 182 CB -0.157 REMARK 500 ARG A 182 CZ ARG A 182 NH1 -0.101 REMARK 500 GLU A 187 CG GLU A 187 CD 0.138 REMARK 500 GLU A 208 CD GLU A 208 OE2 0.082 REMARK 500 VAL A 211 CB VAL A 211 CG2 -0.159 REMARK 500 GLU A 212 C GLU A 212 O -0.117 REMARK 500 GLU B1122 CG GLU B1122 CD 0.148 REMARK 500 GLU B1124 CD GLU B1124 OE1 0.071 REMARK 500 VAL B1129 CB VAL B1129 CG1 -0.159 REMARK 500 GLU B1139 CD GLU B1139 OE2 0.068 REMARK 500 ALA B1151 N ALA B1151 CA -0.133 REMARK 500 HIS B1153 CG HIS B1153 CD2 0.069 REMARK 500 GLU B1156 CG GLU B1156 CD 0.133 REMARK 500 GLU B1156 CD GLU B1156 OE1 -0.071 REMARK 500 TYR B1162 CZ TYR B1162 OH 0.202 REMARK 500 GLU B1164 CB GLU B1164 CG 0.152 REMARK 500 GLU B1164 CB GLU B1164 CG 0.126 REMARK 500 ARG B1167 CZ ARG B1167 NH2 0.107 REMARK 500 LEU B1169 CG LEU B1169 CD2 0.230 REMARK 500 VAL B1170 C VAL B1170 O -0.152 REMARK 500 ILE B1171 CB ILE B1171 CG2 0.224 REMARK 500 GLU B1173 CB GLU B1173 CG 0.121 REMARK 500 REMARK 500 THIS ENTRY HAS 74 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 113 CB - CG - CD1 ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU A 113 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ALA A 166 CB - CA - C ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 LEU A 169 CA - CB - CG ANGL. DEV. = 23.0 DEGREES REMARK 500 VAL A 170 CG1 - CB - CG2 ANGL. DEV. = -17.8 DEGREES REMARK 500 ILE A 171 CG1 - CB - CG2 ANGL. DEV. = -17.1 DEGREES REMARK 500 ILE A 172 CG1 - CB - CG2 ANGL. DEV. = -22.9 DEGREES REMARK 500 GLU A 173 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 SER A 174 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP A 175 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU A 176 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 LEU A 176 CB - CG - CD1 ANGL. DEV. = -16.6 DEGREES REMARK 500 LEU A 176 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -12.2 DEGREES REMARK 500 GLU A 181 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 182 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 182 CG - CD - NE ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 182 NH1 - CZ - NH2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 LEU A 185 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 GLY A 188 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU B1106 CB - CG - CD1 ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG B1133 CA - CB - CG ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP B1159 CB - CG - OD1 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP B1159 CB - CG - OD2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B1160 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B1160 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR B1162 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR B1162 CZ - CE2 - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 GLU B1163 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 ALA B1166 C - N - CA ANGL. DEV. = -16.6 DEGREES REMARK 500 ALA B1166 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG B1167 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG B1167 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 LYS B1168 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 LYS B1168 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 LEU B1169 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP B1175 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ASP B1175 CB - CG - OD2 ANGL. DEV. = 13.0 DEGREES REMARK 500 LEU B1176 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 LEU B1176 CD1 - CG - CD2 ANGL. DEV. = -20.8 DEGREES REMARK 500 LEU B1176 CB - CG - CD1 ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 54 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 101 65.34 11.28 REMARK 500 ALA A 102 42.11 22.11 REMARK 500 GLN A 103 49.29 8.22 REMARK 500 ARG A 105 9.72 -62.71 REMARK 500 ALA A 116 -9.91 -58.15 REMARK 500 ALA A 166 -27.99 -37.30 REMARK 500 ALA A 166 -28.28 -37.30 REMARK 500 LYS A 210 7.25 -47.89 REMARK 500 ASN A 223 10.55 -69.62 REMARK 500 LYS A 230 92.86 -35.51 REMARK 500 LEU A 231 112.61 131.60 REMARK 500 LEU B1094 -46.26 -2.17 REMARK 500 VAL B1095 17.01 -50.46 REMARK 500 GLU B1096 -33.36 -152.11 REMARK 500 ILE B1143 -73.01 -71.61 REMARK 500 GLN B1144 -12.03 -38.46 REMARK 500 ILE B1146 52.22 -108.48 REMARK 500 GLN B1147 -50.98 -145.84 REMARK 500 GLU B1224 56.71 -92.12 REMARK 500 VAL B1225 -40.15 -156.31 REMARK 500 LEU B1228 -1.56 -59.60 REMARK 500 VAL B1232 -131.49 -151.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 219 0.07 SIDE CHAIN REMARK 500 TYR B1162 0.10 SIDE CHAIN REMARK 500 TYR B1219 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 169 15.34 REMARK 500 ILE A 171 -10.06 REMARK 500 GLU A 180 13.07 REMARK 500 LYS B1168 -14.60 REMARK 500 GLU B1173 11.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 2B9C A 89 208 UNP P04692 TPM1_RAT 88 207 DBREF 2B9C B 1089 1208 UNP P04692 TPM1_RAT 88 207 SEQADV 2B9C MET A 88 UNP P04692 INITIATING METHIONINE SEQADV 2B9C ASP A 209 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS A 210 UNP P04692 EXPRESSION TAG SEQADV 2B9C VAL A 211 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU A 212 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU A 213 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU A 214 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU A 215 UNP P04692 EXPRESSION TAG SEQADV 2B9C SER A 216 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS A 217 UNP P04692 EXPRESSION TAG SEQADV 2B9C ASN A 218 UNP P04692 EXPRESSION TAG SEQADV 2B9C TYR A 219 UNP P04692 EXPRESSION TAG SEQADV 2B9C HIS A 220 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU A 221 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU A 222 UNP P04692 EXPRESSION TAG SEQADV 2B9C ASN A 223 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU A 224 UNP P04692 EXPRESSION TAG SEQADV 2B9C VAL A 225 UNP P04692 EXPRESSION TAG SEQADV 2B9C ALA A 226 UNP P04692 EXPRESSION TAG SEQADV 2B9C ARG A 227 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU A 228 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS A 229 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS A 230 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU A 231 UNP P04692 EXPRESSION TAG SEQADV 2B9C VAL A 232 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLY A 233 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU A 234 UNP P04692 EXPRESSION TAG SEQADV 2B9C MET B 1088 UNP P04692 INITIATING METHIONINE SEQADV 2B9C ASP B 1209 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS B 1210 UNP P04692 EXPRESSION TAG SEQADV 2B9C VAL B 1211 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU B 1212 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU B 1213 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU B 1214 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU B 1215 UNP P04692 EXPRESSION TAG SEQADV 2B9C SER B 1216 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS B 1217 UNP P04692 EXPRESSION TAG SEQADV 2B9C ASN B 1218 UNP P04692 EXPRESSION TAG SEQADV 2B9C TYR B 1219 UNP P04692 EXPRESSION TAG SEQADV 2B9C HIS B 1220 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU B 1221 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU B 1222 UNP P04692 EXPRESSION TAG SEQADV 2B9C ASN B 1223 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU B 1224 UNP P04692 EXPRESSION TAG SEQADV 2B9C VAL B 1225 UNP P04692 EXPRESSION TAG SEQADV 2B9C ALA B 1226 UNP P04692 EXPRESSION TAG SEQADV 2B9C ARG B 1227 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU B 1228 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS B 1229 UNP P04692 EXPRESSION TAG SEQADV 2B9C LYS B 1230 UNP P04692 EXPRESSION TAG SEQADV 2B9C LEU B 1231 UNP P04692 EXPRESSION TAG SEQADV 2B9C VAL B 1232 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLY B 1233 UNP P04692 EXPRESSION TAG SEQADV 2B9C GLU B 1234 UNP P04692 EXPRESSION TAG SEQRES 1 A 147 MET ASN ARG ARG ILE GLN LEU VAL GLU GLU GLU LEU ASP SEQRES 2 A 147 ARG ALA GLN GLU ARG LEU ALA THR ALA LEU GLN LYS LEU SEQRES 3 A 147 GLU GLU ALA GLU LYS ALA ALA ASP GLU SER GLU ARG GLY SEQRES 4 A 147 MET LYS VAL ILE GLU SER ARG ALA GLN LYS ASP GLU GLU SEQRES 5 A 147 LYS MET GLU ILE GLN GLU ILE GLN LEU LYS GLU ALA LYS SEQRES 6 A 147 HIS ILE ALA GLU ASP ALA ASP ARG LYS TYR GLU GLU VAL SEQRES 7 A 147 ALA ARG LYS LEU VAL ILE ILE GLU SER ASP LEU GLU ARG SEQRES 8 A 147 ALA GLU GLU ARG ALA GLU LEU SER GLU GLY LYS CYS ALA SEQRES 9 A 147 GLU LEU GLU GLU GLU LEU LYS THR VAL THR ASN ASN LEU SEQRES 10 A 147 LYS SER LEU GLU ASP LYS VAL GLU GLU LEU LEU SER LYS SEQRES 11 A 147 ASN TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS LYS SEQRES 12 A 147 LEU VAL GLY GLU SEQRES 1 B 147 MET ASN ARG ARG ILE GLN LEU VAL GLU GLU GLU LEU ASP SEQRES 2 B 147 ARG ALA GLN GLU ARG LEU ALA THR ALA LEU GLN LYS LEU SEQRES 3 B 147 GLU GLU ALA GLU LYS ALA ALA ASP GLU SER GLU ARG GLY SEQRES 4 B 147 MET LYS VAL ILE GLU SER ARG ALA GLN LYS ASP GLU GLU SEQRES 5 B 147 LYS MET GLU ILE GLN GLU ILE GLN LEU LYS GLU ALA LYS SEQRES 6 B 147 HIS ILE ALA GLU ASP ALA ASP ARG LYS TYR GLU GLU VAL SEQRES 7 B 147 ALA ARG LYS LEU VAL ILE ILE GLU SER ASP LEU GLU ARG SEQRES 8 B 147 ALA GLU GLU ARG ALA GLU LEU SER GLU GLY LYS CYS ALA SEQRES 9 B 147 GLU LEU GLU GLU GLU LEU LYS THR VAL THR ASN ASN LEU SEQRES 10 B 147 LYS SER LEU GLU ASP LYS VAL GLU GLU LEU LEU SER LYS SEQRES 11 B 147 ASN TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS LYS SEQRES 12 B 147 LEU VAL GLY GLU FORMUL 3 HOH *349(H2 O) HELIX 1 1 LEU A 99 GLU A 104 5 6 HELIX 2 2 ALA A 107 GLU A 124 1 18 HELIX 3 3 GLU A 124 LYS A 210 1 87 HELIX 4 4 GLU A 213 ALA A 226 1 14 HELIX 5 5 LEU B 1099 GLN B 1144 1 46 HELIX 6 6 GLN B 1144 LEU B 1231 1 88 SSBOND 1 CYS A 190 CYS B 1190 1555 1555 2.16 CRYST1 80.515 80.515 112.453 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012420 0.007171 0.000000 0.00000 SCALE2 0.000000 0.014341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008893 0.00000