HEADER VIRAL PROTEIN 14-OCT-05 2BAI TITLE THE ZINC FINGER DOMAIN OF MENGOVIRUS LEADER POLYPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN, RESIDUES 1-32; COMPND 5 SYNONYM: MENGOVIRUS LEADER POLYPEPTIDE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MENGO VIRUS; SOURCE 3 ORGANISM_TAXID: 12107; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER DOMAIN, VIRUS, VIRUSES, CARDIOVIRUS, MENGOVIRUS, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, CESG, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.CORNILESCU,F.W.PORTER,Z.QIN,M.S.LEE,A.C.PALMENBERG,J.L.MARKLEY, AUTHOR 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 4 09-MAR-22 2BAI 1 REMARK LINK REVDAT 3 24-FEB-09 2BAI 1 VERSN REVDAT 2 04-NOV-08 2BAI 1 JRNL REVDAT 1 24-JAN-06 2BAI 0 JRNL AUTH C.C.CORNILESCU,F.W.PORTER,K.Q.ZHAO,A.C.PALMENBERG, JRNL AUTH 2 J.L.MARKLEY JRNL TITL NMR STRUCTURE OF THE MENGOVIRUS LEADER PROTEIN ZINC-FINGER JRNL TITL 2 DOMAIN. JRNL REF FEBS LETT. V. 582 896 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18291103 JRNL DOI 10.1016/J.FEBSLET.2008.02.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA 2.0 REMARK 3 AUTHORS : FRANK DELAGLIO (NMRPIPE), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BAI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034878. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM NC-LABELED MENGOL, 50MM REMARK 210 NAPI, 93% H2O, 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HCCHTOCSY; REMARK 210 HNCA; HCCONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP/STAPP, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 77.08 39.99 REMARK 500 1 MET A 5 -47.74 -154.59 REMARK 500 1 GLU A 6 91.36 71.40 REMARK 500 1 GLN A 7 40.54 170.39 REMARK 500 1 GLU A 8 86.25 52.33 REMARK 500 1 HIS A 12 -45.88 -130.34 REMARK 500 1 SER A 13 45.90 143.54 REMARK 500 1 GLN A 26 26.08 49.74 REMARK 500 2 GLU A 6 77.72 45.37 REMARK 500 2 GLU A 8 72.37 85.14 REMARK 500 2 SER A 13 43.11 141.82 REMARK 500 2 ALA A 24 63.62 -101.98 REMARK 500 2 GLN A 26 27.42 49.55 REMARK 500 2 PHE A 31 -172.05 -176.95 REMARK 500 3 ALA A 2 112.71 60.75 REMARK 500 3 THR A 3 -87.00 -151.72 REMARK 500 3 GLU A 6 91.34 83.41 REMARK 500 3 GLN A 7 -164.75 -163.28 REMARK 500 3 GLU A 8 79.37 -65.13 REMARK 500 3 SER A 13 44.97 143.12 REMARK 500 3 ALA A 24 49.64 -86.93 REMARK 500 4 THR A 4 -168.58 -59.95 REMARK 500 4 GLN A 7 -51.93 -172.30 REMARK 500 4 GLU A 8 85.06 178.47 REMARK 500 4 SER A 13 42.62 144.97 REMARK 500 4 MET A 14 -159.55 -151.95 REMARK 500 4 ALA A 24 65.32 -103.33 REMARK 500 4 PHE A 31 -86.02 57.12 REMARK 500 5 GLU A 6 76.84 57.72 REMARK 500 5 GLN A 7 -82.30 -132.19 REMARK 500 5 SER A 13 43.47 147.44 REMARK 500 5 MET A 14 -151.73 -152.46 REMARK 500 5 PHE A 31 89.06 -169.10 REMARK 500 6 ALA A 2 -71.09 -151.33 REMARK 500 6 THR A 3 -158.81 40.83 REMARK 500 6 THR A 4 43.77 -147.66 REMARK 500 6 GLN A 7 -50.22 -128.29 REMARK 500 6 GLU A 8 74.35 158.62 REMARK 500 6 HIS A 12 -46.84 -130.63 REMARK 500 6 SER A 13 48.10 144.41 REMARK 500 6 ASN A 29 -73.89 -44.34 REMARK 500 7 ALA A 2 64.52 -170.13 REMARK 500 7 GLN A 7 -159.56 -174.21 REMARK 500 7 GLU A 8 79.02 -64.87 REMARK 500 7 SER A 13 44.58 143.37 REMARK 500 7 MET A 14 -159.57 -153.64 REMARK 500 7 ASN A 29 -84.16 -50.01 REMARK 500 8 ALA A 2 -161.39 76.15 REMARK 500 8 MET A 5 173.58 59.23 REMARK 500 8 GLN A 7 -37.56 -176.37 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 110 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 HIS A 12 NE2 101.6 REMARK 620 3 CYS A 19 SG 80.2 79.6 REMARK 620 4 CYS A 22 SG 127.6 110.0 144.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.79761 RELATED DB: TARGETDB DBREF 2BAI A 1 32 UNP P32540 POLG_ENMG3 1 32 SEQRES 1 A 32 MET ALA THR THR MET GLU GLN GLU ILE CYS ALA HIS SER SEQRES 2 A 32 MET THR PHE GLU GLU CYS PRO LYS CYS SER ALA LEU GLN SEQRES 3 A 32 TYR ARG ASN GLY PHE TYR HET ZN A 110 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 THR A 15 GLU A 17 5 3 HELIX 2 2 GLU A 18 ALA A 24 1 7 LINK SG CYS A 10 ZN ZN A 110 1555 1555 2.30 LINK NE2 HIS A 12 ZN ZN A 110 1555 1555 2.08 LINK SG CYS A 19 ZN ZN A 110 1555 1555 2.40 LINK SG CYS A 22 ZN ZN A 110 1555 1555 2.39 SITE 1 AC1 4 CYS A 10 HIS A 12 CYS A 19 CYS A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1