HEADER BIOTIN 03-MAR-99 2BDO TITLE SOLUTION STRUCTURE OF HOLO-BIOTINYL DOMAIN FROM ACETYL COENZYME A TITLE 2 CARBOXYLASE OF ESCHERICHIA COLI DETERMINED BY TRIPLE-RESONANCE NMR TITLE 3 SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ACETYL-COA CARBOXYLASE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BIOTINYL DOMAIN, RESIDUES 77 - 156; COMPND 5 SYNONYM: HOLO BIOTINYL DOMAIN; COMPND 6 EC: 6.4.1.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: BIOTINYL DOMAIN MADE BY EXPRESSING BIOTIN DOMAIN COMPND 9 SUBGENE IN A STRAIN IN WHICH BIOTIN PROTEIN LIGASE IS ALSO EXPRESSED, COMPND 10 LEADING TO PARTIAL BIOTINYLATION IN VIVO SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTM53 KEYWDS BIOTIN, BIOTINYL DOMAIN, ACETYL COA CARBOXYLASE, SWINGING ARM, NMR KEYWDS 2 SPECTROSCOPY, PROTEIN STRUCTURE EXPDTA SOLUTION NMR NUMMDL 23 AUTHOR E.L.ROBERTS,N.SHU,M.J.HOWARD,R.W.BROADHURST,A.CHAPMAN-SMITH, AUTHOR 2 J.C.WALLACE,T.MORRIS,J.E.CRONAN,R.N.PERHAM REVDAT 5 27-DEC-23 2BDO 1 REMARK LINK REVDAT 4 13-JUL-11 2BDO 1 VERSN REVDAT 3 24-FEB-09 2BDO 1 VERSN REVDAT 2 01-APR-03 2BDO 1 JRNL REVDAT 1 27-APR-99 2BDO 0 JRNL AUTH E.L.ROBERTS,N.SHU,M.J.HOWARD,R.W.BROADHURST,A.CHAPMAN-SMITH, JRNL AUTH 2 J.C.WALLACE,T.MORRIS,J.E.CRONAN JR.,R.N.PERHAM JRNL TITL SOLUTION STRUCTURES OF APO AND HOLO BIOTINYL DOMAINS FROM JRNL TITL 2 ACETYL COENZYME A CARBOXYLASE OF ESCHERICHIA COLI DETERMINED JRNL TITL 3 BY TRIPLE-RESONANCE NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY. JRNL REF BIOCHEMISTRY V. 38 5045 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10213607 JRNL DOI 10.1021/BI982466O REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 2BDO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000580. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; NOESY; 15N-1H-HSQC; REMARK 210 HNHA; HNHB; 15N-NOESY-HMQC; 15N- REMARK 210 TOCSY-HMQC; HNCACB; 13C-NOESY- REMARK 210 HSQC; HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AM500; AMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA, ANSIG, XPLOR REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 85 O GLU A 150 1.49 REMARK 500 H THR A 90 O VAL A 118 1.55 REMARK 500 O CYS A 116 H ILE A 127 1.56 REMARK 500 O MET A 124 H GLN A 126 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 95 -138.79 -56.31 REMARK 500 1 SER A 96 105.01 -29.96 REMARK 500 1 PRO A 97 -31.15 -31.48 REMARK 500 1 ASP A 98 42.79 -95.77 REMARK 500 1 ALA A 99 -161.81 -110.49 REMARK 500 1 ALA A 101 137.57 59.31 REMARK 500 1 PHE A 102 -167.68 -73.67 REMARK 500 1 ILE A 103 91.98 -68.37 REMARK 500 1 VAL A 111 104.89 -37.31 REMARK 500 1 LEU A 115 -72.79 -135.52 REMARK 500 1 LYS A 122 56.86 70.37 REMARK 500 1 ASN A 125 60.61 -65.65 REMARK 500 1 SER A 132 164.53 53.42 REMARK 500 1 ALA A 137 -176.03 -177.86 REMARK 500 1 GLU A 141 90.78 66.32 REMARK 500 1 SER A 142 164.42 -40.65 REMARK 500 1 ASP A 149 65.43 66.34 REMARK 500 1 PRO A 151 80.83 -54.57 REMARK 500 2 SER A 96 129.46 158.54 REMARK 500 2 PRO A 97 81.59 -49.52 REMARK 500 2 ASP A 98 53.55 90.16 REMARK 500 2 ALA A 99 -155.60 -98.94 REMARK 500 2 ALA A 101 124.93 56.83 REMARK 500 2 PHE A 102 -169.41 -56.98 REMARK 500 2 VAL A 111 101.82 -37.09 REMARK 500 2 THR A 114 154.56 -33.83 REMARK 500 2 LEU A 115 -76.05 -117.44 REMARK 500 2 GLU A 119 57.98 36.02 REMARK 500 2 MET A 121 30.03 -170.65 REMARK 500 2 ASN A 125 80.11 -59.05 REMARK 500 2 ALA A 129 105.51 -38.04 REMARK 500 2 SER A 132 -175.06 -60.51 REMARK 500 2 ALA A 137 -174.77 179.08 REMARK 500 2 GLU A 141 98.88 85.07 REMARK 500 2 SER A 142 159.94 -37.22 REMARK 500 2 GLU A 147 89.28 -155.93 REMARK 500 2 PHE A 148 129.84 57.70 REMARK 500 2 ASP A 149 78.98 34.75 REMARK 500 2 PRO A 151 88.50 -48.49 REMARK 500 3 HIS A 81 -167.16 -171.81 REMARK 500 3 ARG A 93 -44.72 -133.35 REMARK 500 3 SER A 96 123.12 157.61 REMARK 500 3 PRO A 97 -19.90 -49.55 REMARK 500 3 ALA A 99 -162.67 -116.66 REMARK 500 3 ALA A 101 125.64 57.01 REMARK 500 3 PHE A 102 -164.59 -54.01 REMARK 500 3 ILE A 103 66.48 -69.09 REMARK 500 3 GLU A 104 -172.35 -68.38 REMARK 500 3 VAL A 111 94.68 -47.20 REMARK 500 3 LEU A 115 -72.94 -134.87 REMARK 500 REMARK 500 THIS ENTRY HAS 501 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN A 222 DBREF 2BDO A 77 156 UNP P0ABD8 BCCP_ECOLI 77 156 SEQRES 1 A 80 GLU ILE SER GLY HIS ILE VAL ARG SER PRO MET VAL GLY SEQRES 2 A 80 THR PHE TYR ARG THR PRO SER PRO ASP ALA LYS ALA PHE SEQRES 3 A 80 ILE GLU VAL GLY GLN LYS VAL ASN VAL GLY ASP THR LEU SEQRES 4 A 80 CYS ILE VAL GLU ALA MET LYS MET MET ASN GLN ILE GLU SEQRES 5 A 80 ALA ASP LYS SER GLY THR VAL LYS ALA ILE LEU VAL GLU SEQRES 6 A 80 SER GLY GLN PRO VAL GLU PHE ASP GLU PRO LEU VAL VAL SEQRES 7 A 80 ILE GLU HET BTN A 222 30 HETNAM BTN BIOTIN FORMUL 2 BTN C10 H16 N2 O3 S SHEET 1 A 2 HIS A 81 ARG A 84 0 SHEET 2 A 2 PRO A 151 ILE A 155 -1 N ILE A 155 O HIS A 81 SHEET 1 B 2 ASP A 113 CYS A 116 0 SHEET 2 B 2 ILE A 127 ALA A 129 -1 N ALA A 129 O ASP A 113 LINK NZ LYS A 122 C11 BTN A 222 1555 1555 1.33 SITE 1 AC1 6 TYR A 92 THR A 94 PRO A 95 SER A 96 SITE 2 AC1 6 GLU A 119 LYS A 122 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1