HEADER HYDROLASE 20-OCT-05 2BDU TITLE X-RAY STRUCTURE OF A CYTOSOLIC 5'-NUCLEOTIDASE III FROM MUS MUSCULUS TITLE 2 MM.158936 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC 5'-NUCLEOTIDASE III; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CN-III, PYRIMIDINE 5'- NUCLEOTIDASE 1, P5'N-1, P5N-1, PN-I, COMPND 5 LUPIN; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NT5C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS UMPH-1, CYTOSOLIC 5'-NUCLEOTIDASE III, NT5C3 PROTEIN, AAH38029, KEYWDS 2 BC038029, MM.158936, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 4 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,B.W.HAN,E.BITTO,C.A.BINGMAN,E.BAE, AUTHOR 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 06-NOV-24 2BDU 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2BDU 1 REMARK REVDAT 4 13-JUL-11 2BDU 1 VERSN REVDAT 3 24-FEB-09 2BDU 1 VERSN REVDAT 2 01-AUG-06 2BDU 1 JRNL REVDAT 1 01-NOV-05 2BDU 0 JRNL AUTH E.BITTO,C.A.BINGMAN,G.E.WESENBERG,J.G.MCCOY,G.N.PHILLIPS JRNL TITL STRUCTURE OF PYRIMIDINE 5'-NUCLEOTIDASE TYPE 1. INSIGHT INTO JRNL TITL 2 MECHANISM OF ACTION AND INHIBITION DURING LEAD POISONING. JRNL REF J.BIOL.CHEM. V. 281 20521 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16672222 JRNL DOI 10.1074/JBC.M602000200 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 31910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.074 REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30300 REMARK 3 B22 (A**2) : 0.30300 REMARK 3 B33 (A**2) : -0.45400 REMARK 3 B12 (A**2) : 0.15100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4770 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6426 ; 1.548 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 6.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;39.957 ;25.446 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 906 ;16.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;23.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 720 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3508 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2278 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3236 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 315 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2993 ; 1.379 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4676 ; 2.414 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 4.645 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1750 ; 6.275 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 297 2 REMARK 3 1 B 7 B 297 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1164 ; 0.039 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1166 ; 0.208 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 1164 ; 0.348 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1166 ; 1.244 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4870 75.8290 27.3840 REMARK 3 T TENSOR REMARK 3 T11: -0.1514 T22: -0.1566 REMARK 3 T33: -0.2417 T12: 0.0115 REMARK 3 T13: 0.0254 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 3.9970 L22: 3.2148 REMARK 3 L33: 2.2928 L12: 0.2167 REMARK 3 L13: -0.9015 L23: 0.1261 REMARK 3 S TENSOR REMARK 3 S11: 0.1756 S12: -0.0522 S13: 0.2740 REMARK 3 S21: -0.0974 S22: -0.1287 S23: 0.1561 REMARK 3 S31: -0.3203 S32: 0.0173 S33: -0.0470 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 297 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3540 39.9330 27.3880 REMARK 3 T TENSOR REMARK 3 T11: -0.1464 T22: -0.1557 REMARK 3 T33: -0.2439 T12: 0.0140 REMARK 3 T13: -0.0271 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 4.0347 L22: 3.2878 REMARK 3 L33: 2.2675 L12: 0.1445 REMARK 3 L13: 0.8364 L23: -0.1359 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: -0.0487 S13: -0.2800 REMARK 3 S21: -0.0885 S22: -0.1337 S23: -0.1528 REMARK 3 S31: 0.3169 S32: 0.0102 S33: -0.0455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, SELENIUM C COEFFICIENT FOR STRUCTURE FACTOR REMARK 3 CALCULATION SET TO -9.00, MOLPROBITY USED TO ASSIST IN FINAL REMARK 3 MODEL BUILDING. REMARK 4 REMARK 4 2BDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SI (220) REMARK 200 DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 43.755 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8180 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.067 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0, PHENIX, SHELXD, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 26% PEG 8K, 0.10 M REMARK 280 MOPS (HEPES USED AS CRYOPROTECTANT), PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.92600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.96300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 408 O HOH B 570 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 9 CG HIS A 9 CD2 0.076 REMARK 500 GLU A 80 CD GLU A 80 OE1 0.110 REMARK 500 GLU A 80 CD GLU A 80 OE2 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 50 -68.00 -106.94 REMARK 500 ASN B 60 40.41 39.82 REMARK 500 ASP B 139 30.10 -97.74 REMARK 500 THR B 221 -48.70 -29.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.36414 RELATED DB: TARGETDB DBREF 2BDU A 2 297 UNP Q9D020 5NT3_MOUSE 2 297 DBREF 2BDU B 2 297 UNP Q9D020 5NT3_MOUSE 2 297 SEQADV 2BDU SER A 1 UNP Q9D020 CLONING ARTIFACT SEQADV 2BDU MSE A 12 UNP Q9D020 MET 12 MODIFIED RESIDUE SEQADV 2BDU MSE A 13 UNP Q9D020 MET 13 MODIFIED RESIDUE SEQADV 2BDU MSE A 52 UNP Q9D020 MET 52 MODIFIED RESIDUE SEQADV 2BDU MSE A 110 UNP Q9D020 MET 110 MODIFIED RESIDUE SEQADV 2BDU MSE A 141 UNP Q9D020 MET 141 MODIFIED RESIDUE SEQADV 2BDU MSE A 192 UNP Q9D020 MET 192 MODIFIED RESIDUE SEQADV 2BDU MSE A 245 UNP Q9D020 MET 245 MODIFIED RESIDUE SEQADV 2BDU MSE A 273 UNP Q9D020 MET 273 MODIFIED RESIDUE SEQADV 2BDU SER B 1 UNP Q9D020 CLONING ARTIFACT SEQADV 2BDU MSE B 12 UNP Q9D020 MET 12 MODIFIED RESIDUE SEQADV 2BDU MSE B 13 UNP Q9D020 MET 13 MODIFIED RESIDUE SEQADV 2BDU MSE B 52 UNP Q9D020 MET 52 MODIFIED RESIDUE SEQADV 2BDU MSE B 110 UNP Q9D020 MET 110 MODIFIED RESIDUE SEQADV 2BDU MSE B 141 UNP Q9D020 MET 141 MODIFIED RESIDUE SEQADV 2BDU MSE B 192 UNP Q9D020 MET 192 MODIFIED RESIDUE SEQADV 2BDU MSE B 245 UNP Q9D020 MET 245 MODIFIED RESIDUE SEQADV 2BDU MSE B 273 UNP Q9D020 MET 273 MODIFIED RESIDUE SEQRES 1 A 297 SER THR ASN GLN GLU SER ALA VAL HIS LEU LYS MSE MSE SEQRES 2 A 297 PRO GLU PHE GLN LYS SER SER VAL ARG ILE LYS ASN PRO SEQRES 3 A 297 THR ARG VAL GLU GLU ILE ILE CYS GLY LEU ILE LYS GLY SEQRES 4 A 297 GLY ALA ALA LYS LEU GLN ILE ILE THR ASP PHE ASP MSE SEQRES 5 A 297 THR LEU SER ARG PHE SER TYR ASN GLY LYS ARG CYS PRO SEQRES 6 A 297 THR CYS HIS ASN ILE ILE ASP ASN CYS LYS LEU VAL THR SEQRES 7 A 297 ASP GLU CYS ARG ARG LYS LEU LEU GLN LEU LYS GLU GLN SEQRES 8 A 297 TYR TYR ALA ILE GLU VAL ASP PRO VAL LEU THR VAL GLU SEQRES 9 A 297 GLU LYS PHE PRO TYR MSE VAL GLU TRP TYR THR LYS SER SEQRES 10 A 297 HIS GLY LEU LEU ILE GLU GLN GLY ILE PRO LYS ALA LYS SEQRES 11 A 297 LEU LYS GLU ILE VAL ALA ASP SER ASP VAL MSE LEU LYS SEQRES 12 A 297 GLU GLY TYR GLU ASN PHE PHE GLY LYS LEU GLN GLN HIS SEQRES 13 A 297 GLY ILE PRO VAL PHE ILE PHE SER ALA GLY ILE GLY ASP SEQRES 14 A 297 VAL LEU GLU GLU VAL ILE ARG GLN ALA GLY VAL TYR HIS SEQRES 15 A 297 SER ASN VAL LYS VAL VAL SER ASN PHE MSE ASP PHE ASP SEQRES 16 A 297 GLU ASN GLY VAL LEU LYS GLY PHE LYS GLY GLU LEU ILE SEQRES 17 A 297 HIS VAL PHE ASN LYS HIS ASP GLY ALA LEU LYS ASN THR SEQRES 18 A 297 ASP TYR PHE SER GLN LEU LYS ASP ASN SER ASN ILE ILE SEQRES 19 A 297 LEU LEU GLY ASP SER GLN GLY ASP LEU ARG MSE ALA ASP SEQRES 20 A 297 GLY VAL ALA ASN VAL GLU HIS ILE LEU LYS ILE GLY TYR SEQRES 21 A 297 LEU ASN ASP ARG VAL ASP GLU LEU LEU GLU LYS TYR MSE SEQRES 22 A 297 ASP SER TYR ASP ILE VAL LEU VAL LYS GLU GLU SER LEU SEQRES 23 A 297 GLU VAL VAL ASN SER ILE LEU GLN LYS THR LEU SEQRES 1 B 297 SER THR ASN GLN GLU SER ALA VAL HIS LEU LYS MSE MSE SEQRES 2 B 297 PRO GLU PHE GLN LYS SER SER VAL ARG ILE LYS ASN PRO SEQRES 3 B 297 THR ARG VAL GLU GLU ILE ILE CYS GLY LEU ILE LYS GLY SEQRES 4 B 297 GLY ALA ALA LYS LEU GLN ILE ILE THR ASP PHE ASP MSE SEQRES 5 B 297 THR LEU SER ARG PHE SER TYR ASN GLY LYS ARG CYS PRO SEQRES 6 B 297 THR CYS HIS ASN ILE ILE ASP ASN CYS LYS LEU VAL THR SEQRES 7 B 297 ASP GLU CYS ARG ARG LYS LEU LEU GLN LEU LYS GLU GLN SEQRES 8 B 297 TYR TYR ALA ILE GLU VAL ASP PRO VAL LEU THR VAL GLU SEQRES 9 B 297 GLU LYS PHE PRO TYR MSE VAL GLU TRP TYR THR LYS SER SEQRES 10 B 297 HIS GLY LEU LEU ILE GLU GLN GLY ILE PRO LYS ALA LYS SEQRES 11 B 297 LEU LYS GLU ILE VAL ALA ASP SER ASP VAL MSE LEU LYS SEQRES 12 B 297 GLU GLY TYR GLU ASN PHE PHE GLY LYS LEU GLN GLN HIS SEQRES 13 B 297 GLY ILE PRO VAL PHE ILE PHE SER ALA GLY ILE GLY ASP SEQRES 14 B 297 VAL LEU GLU GLU VAL ILE ARG GLN ALA GLY VAL TYR HIS SEQRES 15 B 297 SER ASN VAL LYS VAL VAL SER ASN PHE MSE ASP PHE ASP SEQRES 16 B 297 GLU ASN GLY VAL LEU LYS GLY PHE LYS GLY GLU LEU ILE SEQRES 17 B 297 HIS VAL PHE ASN LYS HIS ASP GLY ALA LEU LYS ASN THR SEQRES 18 B 297 ASP TYR PHE SER GLN LEU LYS ASP ASN SER ASN ILE ILE SEQRES 19 B 297 LEU LEU GLY ASP SER GLN GLY ASP LEU ARG MSE ALA ASP SEQRES 20 B 297 GLY VAL ALA ASN VAL GLU HIS ILE LEU LYS ILE GLY TYR SEQRES 21 B 297 LEU ASN ASP ARG VAL ASP GLU LEU LEU GLU LYS TYR MSE SEQRES 22 B 297 ASP SER TYR ASP ILE VAL LEU VAL LYS GLU GLU SER LEU SEQRES 23 B 297 GLU VAL VAL ASN SER ILE LEU GLN LYS THR LEU MODRES 2BDU MSE A 12 MET SELENOMETHIONINE MODRES 2BDU MSE A 13 MET SELENOMETHIONINE MODRES 2BDU MSE A 52 MET SELENOMETHIONINE MODRES 2BDU MSE A 110 MET SELENOMETHIONINE MODRES 2BDU MSE A 141 MET SELENOMETHIONINE MODRES 2BDU MSE A 192 MET SELENOMETHIONINE MODRES 2BDU MSE A 245 MET SELENOMETHIONINE MODRES 2BDU MSE A 273 MET SELENOMETHIONINE MODRES 2BDU MSE B 12 MET SELENOMETHIONINE MODRES 2BDU MSE B 13 MET SELENOMETHIONINE MODRES 2BDU MSE B 52 MET SELENOMETHIONINE MODRES 2BDU MSE B 110 MET SELENOMETHIONINE MODRES 2BDU MSE B 141 MET SELENOMETHIONINE MODRES 2BDU MSE B 192 MET SELENOMETHIONINE MODRES 2BDU MSE B 245 MET SELENOMETHIONINE MODRES 2BDU MSE B 273 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 13 8 HET MSE A 52 8 HET MSE A 110 8 HET MSE A 141 8 HET MSE A 192 8 HET MSE A 245 8 HET MSE A 273 8 HET MSE B 12 8 HET MSE B 13 8 HET MSE B 52 8 HET MSE B 110 8 HET MSE B 141 8 HET MSE B 192 8 HET MSE B 245 8 HET MSE B 273 8 HET EPE A 401 15 HET EPE B 402 15 HETNAM MSE SELENOMETHIONINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 5 HOH *359(H2 O) HELIX 1 1 HIS A 9 LYS A 18 5 10 HELIX 2 2 ASN A 25 GLY A 40 1 16 HELIX 3 3 THR A 66 ASN A 73 1 8 HELIX 4 4 THR A 78 VAL A 97 1 20 HELIX 5 5 THR A 102 GLY A 125 1 24 HELIX 6 6 PRO A 127 ALA A 129 5 3 HELIX 7 7 LYS A 130 SER A 138 1 9 HELIX 8 8 GLY A 145 GLY A 157 1 13 HELIX 9 9 GLY A 168 ALA A 178 1 11 HELIX 10 10 ASN A 212 LYS A 219 1 8 HELIX 11 11 ASN A 220 LEU A 227 1 8 HELIX 12 12 GLN A 240 MSE A 245 5 6 HELIX 13 13 ARG A 264 TYR A 276 1 13 HELIX 14 14 LEU A 286 LEU A 297 1 12 HELIX 15 15 HIS B 9 LYS B 18 5 10 HELIX 16 16 ASN B 25 GLY B 40 1 16 HELIX 17 17 THR B 66 ASN B 73 1 8 HELIX 18 18 THR B 78 VAL B 97 1 20 HELIX 19 19 THR B 102 GLN B 124 1 23 HELIX 20 20 PRO B 127 ALA B 129 5 3 HELIX 21 21 LYS B 130 ASP B 137 1 8 HELIX 22 22 GLY B 145 GLY B 157 1 13 HELIX 23 23 GLY B 168 ALA B 178 1 11 HELIX 24 24 ASN B 212 LYS B 219 1 8 HELIX 25 25 ASN B 220 LEU B 227 1 8 HELIX 26 26 GLN B 240 MSE B 245 5 6 HELIX 27 27 ARG B 264 TYR B 276 1 13 HELIX 28 28 LEU B 286 LEU B 297 1 12 SHEET 1 A 7 VAL A 21 ARG A 22 0 SHEET 2 A 7 ILE A 278 VAL A 281 -1 O VAL A 279 N ARG A 22 SHEET 3 A 7 HIS A 254 LEU A 261 1 N GLY A 259 O LEU A 280 SHEET 4 A 7 ASN A 232 GLY A 237 1 N LEU A 235 O ILE A 258 SHEET 5 A 7 LEU A 44 THR A 48 1 N ILE A 47 O ILE A 234 SHEET 6 A 7 VAL A 160 ILE A 167 1 O PHE A 163 N THR A 48 SHEET 7 A 7 VAL A 185 ASN A 190 1 O LYS A 186 N VAL A 160 SHEET 1 B 2 SER A 58 TYR A 59 0 SHEET 2 B 2 LYS A 62 ARG A 63 -1 O LYS A 62 N TYR A 59 SHEET 1 C 2 MSE A 192 PHE A 194 0 SHEET 2 C 2 LEU A 200 PHE A 203 -1 O LYS A 201 N ASP A 193 SHEET 1 D 7 VAL B 21 ARG B 22 0 SHEET 2 D 7 ILE B 278 VAL B 281 -1 O VAL B 279 N ARG B 22 SHEET 3 D 7 HIS B 254 LEU B 261 1 N GLY B 259 O ILE B 278 SHEET 4 D 7 ASN B 232 GLY B 237 1 N LEU B 235 O ILE B 258 SHEET 5 D 7 LEU B 44 THR B 48 1 N ILE B 47 O ILE B 234 SHEET 6 D 7 VAL B 160 ILE B 167 1 O PHE B 163 N THR B 48 SHEET 7 D 7 VAL B 185 ASN B 190 1 O LYS B 186 N VAL B 160 SHEET 1 E 2 SER B 58 TYR B 59 0 SHEET 2 E 2 LYS B 62 ARG B 63 -1 O LYS B 62 N TYR B 59 SHEET 1 F 2 MSE B 192 PHE B 194 0 SHEET 2 F 2 LEU B 200 PHE B 203 -1 O LYS B 201 N ASP B 193 LINK C LYS A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N PRO A 14 1555 1555 1.35 LINK C ASP A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N THR A 53 1555 1555 1.33 LINK C TYR A 109 N MSE A 110 1555 1555 1.35 LINK C MSE A 110 N VAL A 111 1555 1555 1.33 LINK C VAL A 140 N MSE A 141 1555 1555 1.32 LINK C MSE A 141 N LEU A 142 1555 1555 1.33 LINK C PHE A 191 N MSE A 192 1555 1555 1.32 LINK C MSE A 192 N ASP A 193 1555 1555 1.32 LINK C ARG A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N ALA A 246 1555 1555 1.34 LINK C TYR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N ASP A 274 1555 1555 1.34 LINK C LYS B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N PRO B 14 1555 1555 1.36 LINK C ASP B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N THR B 53 1555 1555 1.33 LINK C TYR B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N VAL B 111 1555 1555 1.33 LINK C VAL B 140 N MSE B 141 1555 1555 1.32 LINK C MSE B 141 N LEU B 142 1555 1555 1.33 LINK C PHE B 191 N MSE B 192 1555 1555 1.32 LINK C MSE B 192 N ASP B 193 1555 1555 1.32 LINK C ARG B 244 N MSE B 245 1555 1555 1.34 LINK C MSE B 245 N ALA B 246 1555 1555 1.34 LINK C TYR B 272 N MSE B 273 1555 1555 1.33 LINK C MSE B 273 N ASP B 274 1555 1555 1.34 SITE 1 AC1 3 GLN A 294 LYS A 295 LEU A 297 SITE 1 AC2 3 GLN B 294 LYS B 295 LEU B 297 CRYST1 133.674 133.674 38.889 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007480 0.004320 0.000000 0.00000 SCALE2 0.000000 0.008640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025710 0.00000