HEADER HYDROLASE/HYDROLASE INHIBITOR 21-OCT-05 2BDX TITLE X-RAY CRYSTAL STRUCTURE OF DIHYDROMICROCYSTIN-LA BOUND TO PROTEIN TITLE 2 PHOSPHATASE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PP-1G, PROTEIN PHOSPHATASE 1C CATALYTIC SUBUNIT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DIHYDROMICROCYSTIN-LA; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP1CC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MICROCYSTIS AERUGINOSA; SOURCE 12 ORGANISM_TAXID: 1126 KEYWDS PROTEIN PHOSPHATASE, NATURAL PRODUCT INHIBITORS, MICROCYSTINS, KEYWDS 2 NODULARINS, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.T.MAYNES,H.A.LUU,M.M.CHERNEY,R.J.ANDERSEN,D.WILLIAMS,C.F.HOLMES, AUTHOR 2 M.N.JAMES REVDAT 8 30-OCT-24 2BDX 1 REMARK REVDAT 7 15-NOV-23 2BDX 1 LINK ATOM REVDAT 6 23-AUG-23 2BDX 1 SEQADV LINK REVDAT 5 27-JUL-11 2BDX 1 REVDAT REVDAT 4 13-JUL-11 2BDX 1 VERSN REVDAT 3 24-FEB-09 2BDX 1 VERSN REVDAT 2 31-JAN-06 2BDX 1 JRNL REVDAT 1 17-JAN-06 2BDX 0 JRNL AUTH J.T.MAYNES,H.A.LUU,M.M.CHERNEY,R.J.ANDERSEN,D.WILLIAMS, JRNL AUTH 2 C.F.HOLMES,M.N.JAMES JRNL TITL CRYSTAL STRUCTURES OF PROTEIN PHOSPHATASE-1 BOUND TO JRNL TITL 2 MOTUPORIN AND DIHYDROMICROCYSTIN-LA: ELUCIDATION OF THE JRNL TITL 3 MECHANISM OF ENZYME INHIBITION BY CYANOBACTERIAL TOXINS. JRNL REF J.MOL.BIOL. V. 356 111 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16343532 JRNL DOI 10.1016/J.JMB.2005.11.019 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 995 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.378 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2458 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3325 ; 1.574 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 7.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;37.223 ;24.052 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;15.760 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1888 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1039 ; 0.147 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1635 ; 0.302 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 154 ; 0.162 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.122 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.130 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 0.948 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2341 ; 1.630 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1085 ; 2.020 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 984 ; 3.016 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2BDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000034979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : 0.26700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1JK7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M LITHIUM SULFATE, TRIS-HCL (100 REMARK 280 MM, PH 8.0), POLYETHYLENE GLYCOL 400 (2%) AND BETA- REMARK 280 MERCAPTOETHANOL (10 MM), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.98900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.98900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.47450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.98900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.98900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.47450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.98900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.98900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.47450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.98900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.98900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.47450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE DIHYDROMICROCYSTIN-LA IS OLIGOPEPTIDE, A MEMBER OF TOXIN CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: DIHYDROMICROCYSTIN-LA REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 299 REMARK 465 GLU A 300 REMARK 465 LYS A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 PRO A 304 REMARK 465 ASN A 305 REMARK 465 ALA A 306 REMARK 465 THR A 307 REMARK 465 ARG A 308 REMARK 465 PRO A 309 REMARK 465 VAL A 310 REMARK 465 THR A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 ARG A 314 REMARK 465 GLY A 315 REMARK 465 MET A 316 REMARK 465 ILE A 317 REMARK 465 THR A 318 REMARK 465 LYS A 319 REMARK 465 GLN A 320 REMARK 465 ALA A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CZ NH1 NH2 REMARK 470 LYS A 41 CD CE NZ REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 LYS A 150 CD CE NZ REMARK 470 GLU A 230 CD OE1 OE2 REMARK 470 ASP A 277 CG OD1 OD2 REMARK 470 MET A 290 CG SD CE REMARK 470 LEU A 296 CG CD1 CD2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 157.58 78.60 REMARK 500 ARG A 96 -58.76 75.09 REMARK 500 GLU A 126 41.96 -93.07 REMARK 500 TYR A 144 -108.78 -141.89 REMARK 500 VAL A 195 75.79 -115.43 REMARK 500 GLN A 198 159.48 -47.25 REMARK 500 SER A 224 -151.29 67.75 REMARK 500 ALA A 247 -128.48 -135.09 REMARK 500 HIS A 248 -29.54 80.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 188 ILE A 189 149.57 REMARK 500 1ZN B 5 FGA B 6 144.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1ZN B 5 -18.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD2 REMARK 620 2 HIS A 66 NE2 103.6 REMARK 620 3 ASP A 92 OD2 97.3 93.7 REMARK 620 4 HOH A 523 O 104.5 151.3 77.2 REMARK 620 5 HOH A 524 O 93.1 92.1 166.6 92.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 400 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD2 REMARK 620 2 ASN A 124 OD1 97.1 REMARK 620 3 HIS A 173 NE2 87.8 95.3 REMARK 620 4 HIS A 248 ND1 168.1 94.5 93.7 REMARK 620 5 HOH A 523 O 81.8 124.2 140.0 89.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF DIHYDROMICROCYSTIN REMARK 800 -LA REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BCD RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF PROTEIN PHOSPHATASE-1 WITH THE MARINE REMARK 900 TOXIN MOTUPORIN BOUND DBREF 2BDX A 1 323 UNP P36873 PP1G_HUMAN 1 323 DBREF 2BDX B 1 7 NOR NOR00106 NOR00106 1 7 SEQADV 2BDX MAA B 7 PDB NOR00106 DAM 7 MODIFIED RESIDUE SEQRES 1 A 323 MET ALA ASP LEU ASP LYS LEU ASN ILE ASP SER ILE ILE SEQRES 2 A 323 GLN ARG LEU LEU GLU VAL ARG GLY SER LYS PRO GLY LYS SEQRES 3 A 323 ASN VAL GLN LEU GLN GLU ASN GLU ILE ARG GLY LEU CYS SEQRES 4 A 323 LEU LYS SER ARG GLU ILE PHE LEU SER GLN PRO ILE LEU SEQRES 5 A 323 LEU GLU LEU GLU ALA PRO LEU LYS ILE CYS GLY ASP ILE SEQRES 6 A 323 HIS GLY GLN TYR TYR ASP LEU LEU ARG LEU PHE GLU TYR SEQRES 7 A 323 GLY GLY PHE PRO PRO GLU SER ASN TYR LEU PHE LEU GLY SEQRES 8 A 323 ASP TYR VAL ASP ARG GLY LYS GLN SER LEU GLU THR ILE SEQRES 9 A 323 CYS LEU LEU LEU ALA TYR LYS ILE LYS TYR PRO GLU ASN SEQRES 10 A 323 PHE PHE LEU LEU ARG GLY ASN HIS GLU CYS ALA SER ILE SEQRES 11 A 323 ASN ARG ILE TYR GLY PHE TYR ASP GLU CYS LYS ARG ARG SEQRES 12 A 323 TYR ASN ILE LYS LEU TRP LYS THR PHE THR ASP CYS PHE SEQRES 13 A 323 ASN CYS LEU PRO ILE ALA ALA ILE VAL ASP GLU LYS ILE SEQRES 14 A 323 PHE CYS CYS HIS GLY GLY LEU SER PRO ASP LEU GLN SER SEQRES 15 A 323 MET GLU GLN ILE ARG ARG ILE MET ARG PRO THR ASP VAL SEQRES 16 A 323 PRO ASP GLN GLY LEU LEU CYS ASP LEU LEU TRP SER ASP SEQRES 17 A 323 PRO ASP LYS ASP VAL LEU GLY TRP GLY GLU ASN ASP ARG SEQRES 18 A 323 GLY VAL SER PHE THR PHE GLY ALA GLU VAL VAL ALA LYS SEQRES 19 A 323 PHE LEU HIS LYS HIS ASP LEU ASP LEU ILE CYS ARG ALA SEQRES 20 A 323 HIS GLN VAL VAL GLU ASP GLY TYR GLU PHE PHE ALA LYS SEQRES 21 A 323 ARG GLN LEU VAL THR LEU PHE SER ALA PRO ASN TYR CYS SEQRES 22 A 323 GLY GLU PHE ASP ASN ALA GLY ALA MET MET SER VAL ASP SEQRES 23 A 323 GLU THR LEU MET CYS SER PHE GLN ILE LEU LYS PRO ALA SEQRES 24 A 323 GLU LYS LYS LYS PRO ASN ALA THR ARG PRO VAL THR PRO SEQRES 25 A 323 PRO ARG GLY MET ILE THR LYS GLN ALA LYS LYS SEQRES 1 B 7 DAL LEU ACB ALA 1ZN FGA MAA MODRES 2BDX MAA B 7 ALA N-METHYL-L-ALANINE HET DAL B 1 5 HET ACB B 3 9 HET 1ZN B 5 23 HET FGA B 6 9 HET MAA B 7 6 HET MN A 400 1 HET MN A 401 1 HETNAM DAL D-ALANINE HETNAM ACB 3-METHYL-BETA-D-ASPARTIC ACID HETNAM 1ZN (2S,3S,4E,6E,8S,9S)-3-AMINO-9-METHOXY-2,6,8-TRIMETHYL- HETNAM 2 1ZN 10-PHENYLDECA-4,6-DIENOIC ACID HETNAM FGA GAMMA-D-GLUTAMIC ACID HETNAM MAA N-METHYL-L-ALANINE HETNAM MN MANGANESE (II) ION HETSYN ACB (3S)-3-METHYL-D-ASPARTIC ACID; D-METHYL ASPARTIC ACID HETSYN FGA D-GLUTAMIC ACID FORMUL 2 DAL C3 H7 N O2 FORMUL 2 ACB C5 H9 N O4 FORMUL 2 1ZN C20 H29 N O3 FORMUL 2 FGA C5 H9 N O4 FORMUL 2 MAA C4 H9 N O2 FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *35(H2 O) HELIX 1 1 ASN A 8 GLU A 18 1 11 HELIX 2 2 GLN A 31 GLN A 49 1 19 HELIX 3 3 GLN A 68 GLY A 80 1 13 HELIX 4 4 GLN A 99 TYR A 114 1 16 HELIX 5 5 CYS A 127 ARG A 132 1 6 HELIX 6 6 GLY A 135 TYR A 144 1 10 HELIX 7 7 ASN A 145 ASN A 157 1 13 HELIX 8 8 SER A 182 ARG A 188 1 7 HELIX 9 9 GLY A 199 SER A 207 1 9 HELIX 10 10 GLY A 228 HIS A 239 1 12 HELIX 11 11 ASN A 271 GLU A 275 5 5 SHEET 1 A 6 LEU A 52 LEU A 55 0 SHEET 2 A 6 ALA A 162 VAL A 165 1 O ALA A 162 N LEU A 53 SHEET 3 A 6 ILE A 169 CYS A 172 -1 O CYS A 171 N ALA A 163 SHEET 4 A 6 LEU A 243 ARG A 246 1 O LEU A 243 N PHE A 170 SHEET 5 A 6 LEU A 263 LEU A 266 1 O VAL A 264 N ARG A 246 SHEET 6 A 6 TYR A 255 PHE A 258 -1 N GLU A 256 O THR A 265 SHEET 1 B 5 PHE A 118 LEU A 120 0 SHEET 2 B 5 TYR A 87 PHE A 89 1 N PHE A 89 O PHE A 119 SHEET 3 B 5 LEU A 59 CYS A 62 1 N LYS A 60 O LEU A 88 SHEET 4 B 5 GLY A 280 VAL A 285 -1 O MET A 283 N ILE A 61 SHEET 5 B 5 CYS A 291 LEU A 296 -1 O SER A 292 N SER A 284 SHEET 1 C 3 ASP A 208 PRO A 209 0 SHEET 2 C 3 PHE A 225 PHE A 227 1 O PHE A 227 N ASP A 208 SHEET 3 C 3 TRP A 216 GLU A 218 -1 N GLY A 217 O THR A 226 LINK C DAL B 1 N LEU B 2 1555 1555 1.34 LINK N DAL B 1 C MAA B 7 1555 1555 1.34 LINK C LEU B 2 N ACB B 3 1555 1555 1.34 LINK CG ACB B 3 N ALA B 4 1555 1555 1.33 LINK C ALA B 4 N 1ZN B 5 1555 1555 1.34 LINK C 1ZN B 5 N FGA B 6 1555 1555 1.33 LINK CD FGA B 6 N MAA B 7 1555 1555 1.36 LINK OD2 ASP A 64 MN MN A 401 1555 1555 2.04 LINK NE2 HIS A 66 MN MN A 401 1555 1555 2.17 LINK OD2 ASP A 92 MN MN A 400 1555 1555 2.29 LINK OD2 ASP A 92 MN MN A 401 1555 1555 2.24 LINK OD1 ASN A 124 MN MN A 400 1555 1555 2.01 LINK NE2 HIS A 173 MN MN A 400 1555 1555 2.07 LINK ND1 HIS A 248 MN MN A 400 1555 1555 2.24 LINK MN MN A 400 O HOH A 523 1555 1555 1.88 LINK MN MN A 401 O HOH A 523 1555 1555 2.17 LINK MN MN A 401 O HOH A 524 1555 1555 2.02 CISPEP 1 ALA A 57 PRO A 58 0 0.68 CISPEP 2 PRO A 82 PRO A 83 0 4.32 CISPEP 3 ARG A 191 PRO A 192 0 0.55 SITE 1 AC1 6 ASP A 92 ASN A 124 HIS A 173 HIS A 248 SITE 2 AC1 6 MN A 401 HOH A 523 SITE 1 AC2 6 ASP A 64 HIS A 66 ASP A 92 MN A 400 SITE 2 AC2 6 HOH A 523 HOH A 524 SITE 1 AC3 15 SER A 129 TYR A 134 GLN A 181 SER A 182 SITE 2 AC3 15 GLU A 184 GLN A 185 ARG A 188 ASP A 220 SITE 3 AC3 15 ARG A 221 VAL A 223 TYR A 272 GLU A 275 SITE 4 AC3 15 PHE A 276 HOH A 514 HOH A 524 CRYST1 99.978 99.978 62.949 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015890 0.00000