HEADER TRANSFERASE 23-OCT-05 2BE9 TITLE CRYSTAL STRUCTURE OF THE CTP-LIGANDED (T-STATE) ASPARTATE TITLE 2 TRANSCARBAMOYLASE FROM THE EXTREMELY THERMOPHILIC ARCHAEON SULFOLOBUS TITLE 3 ACIDOCALDARIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE TRANSCARBAMYLASE, ATCASE; COMPND 5 EC: 2.1.3.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 2285; SOURCE 4 GENE: PYRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600(DELTA(PYRBI); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 12 ORGANISM_TAXID: 2285; SOURCE 13 GENE: PYRI; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C600(DELTA(PYRBI); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTRC99 KEYWDS ATCASE, HYPERTHERMOPHILIC, TEMPERATURE, TRANSFERASE, ALLOSTERIC, KEYWDS 2 HOLOENZYME, CTP COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.DE VOS,S.N.SAVVIDES,J.J.VAN BEEUMEN REVDAT 6 23-AUG-23 2BE9 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 2BE9 1 VERSN REVDAT 4 09-JUN-09 2BE9 1 REVDAT REVDAT 3 24-FEB-09 2BE9 1 VERSN REVDAT 2 06-JAN-09 2BE9 1 JRNL REVDAT 1 31-OCT-06 2BE9 0 JRNL AUTH D.DE VOS,Y.XU,T.AERTS,F.VAN PETEGEM,J.J.VAN BEEUMEN JRNL TITL CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS ASPARTATE JRNL TITL 2 CARBAMOYLTRANSFERASE IN COMPLEX WITH ITS ALLOSTERIC JRNL TITL 3 ACTIVATOR CTP. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 372 40 2008 JRNL REFN ISSN 0006-291X JRNL PMID 18477471 JRNL DOI 10.1016/J.BBRC.2008.04.173 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.DE VOS,F.VAN PETEGEM,H.REMAUT,C.LEGRAIN,N.GLANDORFF, REMARK 1 AUTH 2 J.VAN BEEUMEN REMARK 1 TITL CRYSTAL STRUCTURE OF T STATE ASPARTATE CARBAMOYLTRANSFERASE REMARK 1 TITL 2 OF THE HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS ACIDOCALDARIUS. REMARK 1 REF J.MOL.BIOL. V. 339 887 2004 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 15165857 REMARK 1 DOI 10.1016/J.JMB.2004.03.079 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3494 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.440 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3582 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4842 ; 1.440 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 6.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;38.288 ;24.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;19.495 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2580 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1718 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2447 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 0.619 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3582 ; 1.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1465 ; 1.417 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1260 ; 2.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 86.0937 24.2894 60.1123 REMARK 3 T TENSOR REMARK 3 T11: -0.0621 T22: -0.0433 REMARK 3 T33: -0.0998 T12: 0.0022 REMARK 3 T13: -0.0073 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.5788 L22: 1.3742 REMARK 3 L33: 0.8210 L12: -0.2292 REMARK 3 L13: -0.3820 L23: 0.3238 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0836 S13: -0.0148 REMARK 3 S21: -0.0735 S22: 0.0065 S23: -0.0992 REMARK 3 S31: 0.0559 S32: 0.1775 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 117.5675 59.8638 43.1093 REMARK 3 T TENSOR REMARK 3 T11: -0.1227 T22: -0.0224 REMARK 3 T33: -0.1259 T12: -0.0643 REMARK 3 T13: -0.0020 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.8742 L22: 2.6950 REMARK 3 L33: 4.1943 L12: -0.7507 REMARK 3 L13: 0.5514 L23: 0.9204 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: -0.1976 S13: -0.0083 REMARK 3 S21: 0.0210 S22: -0.0316 S23: -0.2226 REMARK 3 S31: -0.0694 S32: -0.0026 S33: 0.0941 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 101.7912 42.4170 47.2624 REMARK 3 T TENSOR REMARK 3 T11: -0.0576 T22: -0.0497 REMARK 3 T33: -0.0920 T12: -0.0466 REMARK 3 T13: 0.0839 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 6.1081 L22: 1.8631 REMARK 3 L33: 1.4843 L12: 1.4138 REMARK 3 L13: -2.5576 L23: 0.2049 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0263 S13: -0.2338 REMARK 3 S21: -0.0926 S22: -0.1155 S23: -0.1912 REMARK 3 S31: -0.0372 S32: 0.0658 S33: 0.1201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2BE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8034 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY: 1PG5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE CTP REMARK 280 SOAK, PH 4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.56600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.56600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.56600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.56600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.56600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.56600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER GENERATED FROM THE REMARK 300 HETERODIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: (-Y,X-Y,Z);(- REMARK 300 X+Y,-X,Z);(-Y,-X,-Z+1/2);(-X+Y,Y,-Z+1/2);(X,X-Y,-Z+1/2) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 105710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -192.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 131.93200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 65.96600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 114.25646 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 65.96600 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 114.25646 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 69.56600 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 131.93200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 69.56600 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 69.56600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 74 REMARK 465 SER A 75 REMARK 465 THR A 76 REMARK 465 SER A 77 REMARK 465 VAL A 78 REMARK 465 ALA A 79 REMARK 465 LYS A 80 REMARK 465 MET B -3 REMARK 465 GLU B -2 REMARK 465 PHE B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ILE B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 ASN B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 40 REMARK 465 HIS B 41 REMARK 465 ALA B 161 REMARK 465 ASN B 162 REMARK 465 ASN B 163 REMARK 465 LYS B 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CE NZ REMARK 470 ASN A 28 CG OD1 ND2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 191 CE NZ REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 VAL A 228 CG1 CG2 REMARK 470 LYS B 14 CE NZ REMARK 470 LYS B 100 NZ REMARK 470 LYS B 136 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 99 O HOH B 1132 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 48 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -79.65 -139.43 REMARK 500 ASN A 28 53.13 -51.78 REMARK 500 ASN A 83 133.48 -14.82 REMARK 500 HIS A 127 -80.03 -78.69 REMARK 500 HIS A 129 67.18 -152.23 REMARK 500 ASN A 145 18.44 55.76 REMARK 500 PHE A 174 -167.19 -122.77 REMARK 500 ARG A 226 -39.78 -166.83 REMARK 500 VAL A 263 -85.26 -109.90 REMARK 500 TYR B 93 -14.30 94.41 REMARK 500 ASN B 122 -38.58 -136.12 REMARK 500 LYS B 136 -100.42 -45.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 82 ASN A 83 147.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1113 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 113 SG REMARK 620 2 CYS B 118 SG 114.8 REMARK 620 3 CYS B 142 SG 113.6 112.4 REMARK 620 4 CYS B 145 SG 99.2 111.3 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PG5 RELATED DB: PDB DBREF 2BE9 A 0 299 UNP Q55338 PYRB_SULAC 2 299 DBREF 2BE9 B 1 164 UNP P74766 PYRI_SULAC 1 164 SEQADV 2BE9 LEU A 1 UNP Q55338 SEE REMARK 999 SEQADV 2BE9 MET B -3 UNP P74766 CLONING ARTIFACT SEQADV 2BE9 GLU B -2 UNP P74766 CLONING ARTIFACT SEQADV 2BE9 PHE B -1 UNP P74766 CLONING ARTIFACT SEQADV 2BE9 MET B 0 UNP P74766 CLONING ARTIFACT SEQRES 1 A 300 MET LEU LYS HIS ILE ILE SER ALA TYR ASN PHE SER ARG SEQRES 2 A 300 ASP GLU LEU GLU ASP ILE PHE ALA LEU THR ASP LYS TYR SEQRES 3 A 300 SER LYS ASN LEU ASN ASP THR ARG LYS ILE LEU SER GLY SEQRES 4 A 300 LYS THR ILE SER ILE ALA PHE PHE GLU PRO SER THR ARG SEQRES 5 A 300 THR TYR LEU SER PHE GLN LYS ALA ILE ILE ASN LEU GLY SEQRES 6 A 300 GLY ASP VAL ILE GLY PHE SER GLY GLU GLU SER THR SER SEQRES 7 A 300 VAL ALA LYS GLY GLU ASN LEU ALA ASP THR ILE ARG MET SEQRES 8 A 300 LEU ASN ASN TYR SER ASP GLY ILE VAL MET ARG HIS LYS SEQRES 9 A 300 TYR ASP GLY ALA SER ARG PHE ALA SER GLU ILE SER ASP SEQRES 10 A 300 ILE PRO VAL ILE ASN ALA GLY ASP GLY LYS HIS GLU HIS SEQRES 11 A 300 PRO THR GLN ALA VAL ILE ASP ILE TYR THR ILE ASN LYS SEQRES 12 A 300 HIS PHE ASN THR ILE ASP GLY LEU VAL PHE ALA LEU LEU SEQRES 13 A 300 GLY ASP LEU LYS TYR ALA ARG THR VAL ASN SER LEU LEU SEQRES 14 A 300 ARG ILE LEU THR ARG PHE ARG PRO LYS LEU VAL TYR LEU SEQRES 15 A 300 ILE SER PRO GLN LEU LEU ARG ALA ARG LYS GLU ILE LEU SEQRES 16 A 300 ASP GLU LEU ASN TYR PRO VAL LYS GLU VAL GLU ASN PRO SEQRES 17 A 300 PHE GLU VAL ILE ASN GLU VAL ASP VAL LEU TYR VAL THR SEQRES 18 A 300 ARG ILE GLN LYS GLU ARG PHE VAL ASP GLU MET GLU TYR SEQRES 19 A 300 GLU LYS ILE LYS GLY SER TYR ILE VAL SER LEU ASP LEU SEQRES 20 A 300 ALA ASN LYS MET LYS LYS ASP SER ILE ILE LEU HIS PRO SEQRES 21 A 300 LEU PRO ARG VAL ASN GLU ILE ASP ARG LYS VAL ASP LYS SEQRES 22 A 300 THR THR LYS ALA LYS TYR PHE GLU GLN ALA SER TYR GLY SEQRES 23 A 300 VAL PRO VAL ARG MET SER ILE LEU THR LYS ILE TYR GLY SEQRES 24 A 300 GLU SEQRES 1 B 168 MET GLU PHE MET MET GLU ILE GLN GLY ASN ARG LYS GLU SEQRES 2 B 168 LEU MET VAL SER LYS ILE LYS ASN GLY THR VAL ILE ASP SEQRES 3 B 168 HIS ILE PRO ALA GLY ARG ALA PHE ALA VAL LEU ASN VAL SEQRES 4 B 168 LEU GLY ILE LYS GLY HIS GLU GLY PHE ARG ILE ALA LEU SEQRES 5 B 168 VAL ILE ASN VAL ASP SER LYS LYS MET GLY LYS LYS ASP SEQRES 6 B 168 ILE VAL LYS ILE GLU ASP LYS GLU ILE SER ASP THR GLU SEQRES 7 B 168 ALA ASN LEU ILE THR LEU ILE ALA PRO THR ALA THR ILE SEQRES 8 B 168 ASN ILE VAL ARG GLU TYR GLU VAL VAL LYS LYS THR LYS SEQRES 9 B 168 LEU GLU VAL PRO LYS VAL VAL LYS GLY ILE LEU LYS CYS SEQRES 10 B 168 PRO ASN PRO TYR CYS ILE THR SER ASN ASP VAL GLU ALA SEQRES 11 B 168 ILE PRO THR PHE LYS THR LEU THR GLU LYS PRO LEU LYS SEQRES 12 B 168 MET ARG CYS GLU TYR CYS GLU THR ILE ILE ASP GLU ASN SEQRES 13 B 168 GLU ILE MET SER GLN ILE LEU GLY ALA ASN ASN LYS HET ZN B1113 1 HET SO4 B1114 5 HET CTP B 401 29 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 CTP C9 H16 N3 O14 P3 FORMUL 6 HOH *77(H2 O) HELIX 1 1 SER A 6 PHE A 10 5 5 HELIX 2 2 SER A 11 LYS A 27 1 17 HELIX 3 3 SER A 49 LEU A 63 1 15 HELIX 4 4 ASN A 83 SER A 95 1 13 HELIX 5 5 GLY A 106 SER A 115 1 10 HELIX 6 6 HIS A 129 ASN A 145 1 17 HELIX 7 7 ALA A 161 THR A 172 1 12 HELIX 8 8 PRO A 184 ARG A 188 5 5 HELIX 9 9 ARG A 190 ASP A 195 1 6 HELIX 10 10 ASN A 206 VAL A 214 5 9 HELIX 11 11 ASP A 229 LYS A 237 1 9 HELIX 12 12 GLY A 238 TYR A 240 5 3 HELIX 13 13 SER A 243 LYS A 249 1 7 HELIX 14 14 LYS A 269 THR A 273 5 5 HELIX 15 15 LYS A 277 TYR A 284 1 8 HELIX 16 16 TYR A 284 GLY A 298 1 15 HELIX 17 17 ARG B 28 GLY B 37 1 10 HELIX 18 18 SER B 71 LEU B 77 1 7 HELIX 19 19 ILE B 78 ILE B 81 5 4 HELIX 20 20 CYS B 118 ASN B 122 5 5 HELIX 21 21 GLU B 151 LEU B 159 1 9 SHEET 1 A 4 ASP A 66 SER A 71 0 SHEET 2 A 4 THR A 40 PHE A 45 1 N ILE A 43 O ILE A 68 SHEET 3 A 4 GLY A 97 HIS A 102 1 O VAL A 99 N SER A 42 SHEET 4 A 4 VAL A 119 ASP A 124 1 O ALA A 122 N MET A 100 SHEET 1 B 5 VAL A 201 VAL A 204 0 SHEET 2 B 5 LEU A 178 ILE A 182 1 N LEU A 181 O LYS A 202 SHEET 3 B 5 VAL A 151 LEU A 155 1 N PHE A 152 O TYR A 180 SHEET 4 B 5 VAL A 216 VAL A 219 1 O TYR A 218 N ALA A 153 SHEET 5 B 5 ILE A 255 LEU A 257 1 O LEU A 257 N LEU A 217 SHEET 1 C 5 ILE B 46 SER B 54 0 SHEET 2 C 5 GLY B 58 GLU B 66 -1 O LYS B 64 N ALA B 47 SHEET 3 C 5 GLY B 18 PRO B 25 -1 N ILE B 21 O VAL B 63 SHEET 4 C 5 THR B 86 ARG B 91 -1 O VAL B 90 N GLY B 18 SHEET 5 C 5 GLU B 94 THR B 99 -1 O GLU B 94 N ARG B 91 SHEET 1 D 4 VAL B 106 LYS B 108 0 SHEET 2 D 4 THR B 129 THR B 134 -1 O PHE B 130 N VAL B 107 SHEET 3 D 4 LYS B 139 CYS B 142 -1 O LYS B 139 N LEU B 133 SHEET 4 D 4 ILE B 148 ASP B 150 -1 O ILE B 149 N MET B 140 LINK SG CYS B 113 ZN ZN B1113 1555 1555 2.23 LINK SG CYS B 118 ZN ZN B1113 1555 1555 2.25 LINK SG CYS B 142 ZN ZN B1113 1555 1555 2.12 LINK SG CYS B 145 ZN ZN B1113 1555 1555 2.38 CISPEP 1 LEU A 260 PRO A 261 0 -3.96 SITE 1 AC1 4 CYS B 113 CYS B 118 CYS B 142 CYS B 145 SITE 1 AC2 5 HIS B 23 SER B 54 LYS B 55 LYS B 56 SITE 2 AC2 5 LYS B 60 SITE 1 AC3 12 LYS B 14 ILE B 15 VAL B 20 ASP B 22 SITE 2 AC3 12 HIS B 23 LYS B 55 LYS B 64 ASN B 88 SITE 3 AC3 12 VAL B 90 TYR B 93 VAL B 95 LYS B 98 CRYST1 131.932 131.932 139.132 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007580 0.004376 0.000000 0.00000 SCALE2 0.000000 0.008752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007187 0.00000