data_2BF1
#
_entry.id 2BF1
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2BF1 pdb_00002bf1 10.2210/pdb2bf1/pdb
PDBE EBI-21845 ? ?
WWPDB D_1290021845 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-02-17
2 'Structure model' 1 1 2011-05-08
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2018-08-29
5 'Structure model' 2 1 2019-04-03
6 'Structure model' 2 2 2019-05-08
7 'Structure model' 3 0 2020-07-29
8 'Structure model' 3 1 2024-10-16
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 7 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' Advisory
4 4 'Structure model' 'Atomic model'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Derived calculations'
7 4 'Structure model' 'Non-polymer description'
8 4 'Structure model' 'Structure summary'
9 5 'Structure model' 'Data collection'
10 5 'Structure model' 'Derived calculations'
11 5 'Structure model' 'Source and taxonomy'
12 6 'Structure model' 'Data collection'
13 6 'Structure model' 'Experimental preparation'
14 7 'Structure model' Advisory
15 7 'Structure model' 'Atomic model'
16 7 'Structure model' 'Data collection'
17 7 'Structure model' 'Derived calculations'
18 7 'Structure model' Other
19 7 'Structure model' 'Structure summary'
20 8 'Structure model' 'Data collection'
21 8 'Structure model' 'Database references'
22 8 'Structure model' 'Derived calculations'
23 8 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp
3 4 'Structure model' database_PDB_caveat
4 4 'Structure model' entity
5 4 'Structure model' pdbx_entity_nonpoly
6 4 'Structure model' pdbx_nonpoly_scheme
7 4 'Structure model' pdbx_validate_chiral
8 4 'Structure model' struct_asym
9 4 'Structure model' struct_conn
10 4 'Structure model' struct_site_gen
11 5 'Structure model' entity_src_gen
12 5 'Structure model' struct_conn
13 6 'Structure model' exptl_crystal_grow
14 7 'Structure model' atom_site
15 7 'Structure model' chem_comp
16 7 'Structure model' database_PDB_caveat
17 7 'Structure model' entity
18 7 'Structure model' pdbx_branch_scheme
19 7 'Structure model' pdbx_chem_comp_identifier
20 7 'Structure model' pdbx_database_status
21 7 'Structure model' pdbx_entity_branch
22 7 'Structure model' pdbx_entity_branch_descriptor
23 7 'Structure model' pdbx_entity_branch_link
24 7 'Structure model' pdbx_entity_branch_list
25 7 'Structure model' pdbx_entity_nonpoly
26 7 'Structure model' pdbx_nonpoly_scheme
27 7 'Structure model' pdbx_struct_assembly_gen
28 7 'Structure model' pdbx_validate_chiral
29 7 'Structure model' pdbx_validate_close_contact
30 7 'Structure model' pdbx_validate_symm_contact
31 7 'Structure model' struct_asym
32 7 'Structure model' struct_conn
33 7 'Structure model' struct_site
34 7 'Structure model' struct_site_gen
35 8 'Structure model' chem_comp
36 8 'Structure model' chem_comp_atom
37 8 'Structure model' chem_comp_bond
38 8 'Structure model' database_2
39 8 'Structure model' pdbx_entry_details
40 8 'Structure model' pdbx_modification_feature
41 8 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.formula'
2 4 'Structure model' '_chem_comp.formula_weight'
3 4 'Structure model' '_chem_comp.id'
4 4 'Structure model' '_chem_comp.mon_nstd_flag'
5 4 'Structure model' '_chem_comp.name'
6 4 'Structure model' '_chem_comp.type'
7 4 'Structure model' '_pdbx_nonpoly_scheme.entity_id'
8 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id'
9 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id'
10 4 'Structure model' '_struct_asym.entity_id'
11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
15 4 'Structure model' '_struct_site_gen.auth_comp_id'
16 4 'Structure model' '_struct_site_gen.label_comp_id'
17 5 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line'
18 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
19 6 'Structure model' '_exptl_crystal_grow.temp'
20 7 'Structure model' '_atom_site.B_iso_or_equiv'
21 7 'Structure model' '_atom_site.Cartn_x'
22 7 'Structure model' '_atom_site.Cartn_y'
23 7 'Structure model' '_atom_site.Cartn_z'
24 7 'Structure model' '_atom_site.auth_asym_id'
25 7 'Structure model' '_atom_site.auth_atom_id'
26 7 'Structure model' '_atom_site.auth_comp_id'
27 7 'Structure model' '_atom_site.auth_seq_id'
28 7 'Structure model' '_atom_site.label_asym_id'
29 7 'Structure model' '_atom_site.label_atom_id'
30 7 'Structure model' '_atom_site.label_comp_id'
31 7 'Structure model' '_atom_site.label_entity_id'
32 7 'Structure model' '_atom_site.type_symbol'
33 7 'Structure model' '_chem_comp.name'
34 7 'Structure model' '_chem_comp.type'
35 7 'Structure model' '_database_PDB_caveat.text'
36 7 'Structure model' '_pdbx_database_status.status_code_sf'
37 7 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
38 7 'Structure model' '_pdbx_validate_chiral.auth_asym_id'
39 7 'Structure model' '_pdbx_validate_chiral.auth_seq_id'
40 7 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2'
41 7 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2'
42 7 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_1'
43 7 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_2'
44 7 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1'
45 7 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2'
46 7 'Structure model' '_struct_conn.pdbx_dist_value'
47 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
48 7 'Structure model' '_struct_conn.pdbx_role'
49 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
50 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
51 7 'Structure model' '_struct_conn.ptnr1_label_asym_id'
52 7 'Structure model' '_struct_conn.ptnr1_label_atom_id'
53 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
54 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
55 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
56 7 'Structure model' '_struct_conn.ptnr2_label_asym_id'
57 7 'Structure model' '_struct_conn.ptnr2_label_comp_id'
58 8 'Structure model' '_chem_comp.pdbx_synonyms'
59 8 'Structure model' '_database_2.pdbx_DOI'
60 8 'Structure model' '_database_2.pdbx_database_accession'
61 8 'Structure model' '_pdbx_entry_details.has_protein_modification'
62 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_database_PDB_caveat.id
_database_PDB_caveat.text
1 'NAG B 1 HAS WRONG CHIRALITY AT ATOM C1'
2 'FUC B 4 HAS WRONG CHIRALITY AT ATOM C1'
3 'FUC C 6 HAS WRONG CHIRALITY AT ATOM C1'
4 'NAG D 1 HAS WRONG CHIRALITY AT ATOM C1'
5 'FUC D 3 HAS WRONG CHIRALITY AT ATOM C1'
6 'NAG E 1 HAS WRONG CHIRALITY AT ATOM C1'
7 'FUC E 3 HAS WRONG CHIRALITY AT ATOM C1'
8 'FUC F 4 HAS WRONG CHIRALITY AT ATOM C1'
9 'NAG G 1 HAS WRONG CHIRALITY AT ATOM C1'
10 'NAG H 1 HAS WRONG CHIRALITY AT ATOM C1'
11 'FUC H 4 HAS WRONG CHIRALITY AT ATOM C1'
12 'NAG I 1 HAS WRONG CHIRALITY AT ATOM C1'
13 'NAG K 1 HAS WRONG CHIRALITY AT ATOM C1'
14 'FUC K 6 HAS WRONG CHIRALITY AT ATOM C1'
15 'NAG L 1 HAS WRONG CHIRALITY AT ATOM C1'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2BF1
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2004-12-02
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Chen, B.' 1 ?
'Vogan, E.M.' 2 ?
'Gong, H.' 3 ?
'Skehel, J.J.' 4 ?
'Wiley, D.C.' 5 ?
'Harrison, S.C.' 6 ?
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Structure of an Unliganded Simian Immunodeficiency Virus Gp120 Core' Nature 433 834 ?
2005 NATUAS UK 0028-0836 0006 ? 15729334 10.1038/NATURE03327
1 'Determining the Structure of the Unliganded and Fully-Glycosylated Siv Gp120 Envelope Glycoprotein.' Structure 13 197 ?
2005 STRUE6 UK 0969-2126 2005 ? 15698564 10.1016/J.STR.2004.12.004
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Chen, B.' 1 ?
primary 'Vogan, E.M.' 2 ?
primary 'Gong, H.' 3 ?
primary 'Skehel, J.J.' 4 ?
primary 'Wiley, D.C.' 5 ?
primary 'Harrison, S.C.' 6 ?
1 'Chen, B.' 7 ?
1 'Vogan, E.M.' 8 ?
1 'Gong, H.' 9 ?
1 'Skehel, J.J.' 10 ?
1 'Wiley, D.C.' 11 ?
1 'Harrison, S.C.' 12 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'EXTERIOR MEMBRANE GLYCOPROTEIN GP120' 36833.723 1 ? ? 'GP120 CORE, RESIDUES 66-109,209-311,342-502' ?
2 branched man
;beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
;
732.682 3 ? ? ? ?
3 branched man
;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
;
1056.964 2 ? ? ? ?
4 branched man
'2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 2
? ? ? ?
5 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ?
6 branched man
;alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
1235.105 1 ? ? ? ?
7 branched man
;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
910.823 1 ? ? ? ?
8 branched man
;alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
748.682 1 ? ? ? ?
9 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'SIV GP120'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;HMELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCIGAGHCNTSIIQESCDKHYWDTIRFRYCAPPGYAL
LRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRGAGWCWFG
GNWKDAIKEMKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDVTNQRPKERHRR
NYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEIT
;
_entity_poly.pdbx_seq_one_letter_code_can
;HMELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCIGAGHCNTSIIQESCDKHYWDTIRFRYCAPPGYAL
LRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRGAGWCWFG
GNWKDAIKEMKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDVTNQRPKERHRR
NYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEIT
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 9
_pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose
_pdbx_entity_nonpoly.comp_id NAG
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 HIS n
1 2 MET n
1 3 GLU n
1 4 LEU n
1 5 ALA n
1 6 LEU n
1 7 ASN n
1 8 VAL n
1 9 THR n
1 10 GLU n
1 11 SER n
1 12 PHE n
1 13 ASP n
1 14 ALA n
1 15 TRP n
1 16 GLU n
1 17 ASN n
1 18 THR n
1 19 VAL n
1 20 THR n
1 21 GLU n
1 22 GLN n
1 23 ALA n
1 24 ILE n
1 25 GLU n
1 26 ASP n
1 27 VAL n
1 28 TRP n
1 29 GLN n
1 30 LEU n
1 31 PHE n
1 32 GLU n
1 33 THR n
1 34 SER n
1 35 ILE n
1 36 LYS n
1 37 PRO n
1 38 CYS n
1 39 VAL n
1 40 LYS n
1 41 LEU n
1 42 SER n
1 43 PRO n
1 44 LEU n
1 45 CYS n
1 46 ILE n
1 47 GLY n
1 48 ALA n
1 49 GLY n
1 50 HIS n
1 51 CYS n
1 52 ASN n
1 53 THR n
1 54 SER n
1 55 ILE n
1 56 ILE n
1 57 GLN n
1 58 GLU n
1 59 SER n
1 60 CYS n
1 61 ASP n
1 62 LYS n
1 63 HIS n
1 64 TYR n
1 65 TRP n
1 66 ASP n
1 67 THR n
1 68 ILE n
1 69 ARG n
1 70 PHE n
1 71 ARG n
1 72 TYR n
1 73 CYS n
1 74 ALA n
1 75 PRO n
1 76 PRO n
1 77 GLY n
1 78 TYR n
1 79 ALA n
1 80 LEU n
1 81 LEU n
1 82 ARG n
1 83 CYS n
1 84 ASN n
1 85 ASP n
1 86 THR n
1 87 ASN n
1 88 TYR n
1 89 SER n
1 90 GLY n
1 91 PHE n
1 92 MET n
1 93 PRO n
1 94 LYS n
1 95 CYS n
1 96 SER n
1 97 LYS n
1 98 VAL n
1 99 VAL n
1 100 VAL n
1 101 SER n
1 102 SER n
1 103 CYS n
1 104 THR n
1 105 ARG n
1 106 MET n
1 107 MET n
1 108 GLU n
1 109 THR n
1 110 GLN n
1 111 THR n
1 112 SER n
1 113 THR n
1 114 TRP n
1 115 PHE n
1 116 GLY n
1 117 PHE n
1 118 ASN n
1 119 GLY n
1 120 THR n
1 121 ARG n
1 122 ALA n
1 123 GLU n
1 124 ASN n
1 125 ARG n
1 126 THR n
1 127 TYR n
1 128 ILE n
1 129 TYR n
1 130 TRP n
1 131 HIS n
1 132 GLY n
1 133 ARG n
1 134 ASP n
1 135 ASN n
1 136 ARG n
1 137 THR n
1 138 ILE n
1 139 ILE n
1 140 SER n
1 141 LEU n
1 142 ASN n
1 143 LYS n
1 144 TYR n
1 145 TYR n
1 146 ASN n
1 147 LEU n
1 148 THR n
1 149 MET n
1 150 LYS n
1 151 CYS n
1 152 ARG n
1 153 GLY n
1 154 ALA n
1 155 GLY n
1 156 TRP n
1 157 CYS n
1 158 TRP n
1 159 PHE n
1 160 GLY n
1 161 GLY n
1 162 ASN n
1 163 TRP n
1 164 LYS n
1 165 ASP n
1 166 ALA n
1 167 ILE n
1 168 LYS n
1 169 GLU n
1 170 MET n
1 171 LYS n
1 172 GLN n
1 173 THR n
1 174 ILE n
1 175 VAL n
1 176 LYS n
1 177 HIS n
1 178 PRO n
1 179 ARG n
1 180 TYR n
1 181 THR n
1 182 GLY n
1 183 THR n
1 184 ASN n
1 185 ASN n
1 186 THR n
1 187 ASP n
1 188 LYS n
1 189 ILE n
1 190 ASN n
1 191 LEU n
1 192 THR n
1 193 ALA n
1 194 PRO n
1 195 ARG n
1 196 GLY n
1 197 GLY n
1 198 ASP n
1 199 PRO n
1 200 GLU n
1 201 VAL n
1 202 THR n
1 203 PHE n
1 204 MET n
1 205 TRP n
1 206 THR n
1 207 ASN n
1 208 CYS n
1 209 ARG n
1 210 GLY n
1 211 GLU n
1 212 PHE n
1 213 LEU n
1 214 TYR n
1 215 CYS n
1 216 LYS n
1 217 MET n
1 218 ASN n
1 219 TRP n
1 220 PHE n
1 221 LEU n
1 222 ASN n
1 223 TRP n
1 224 VAL n
1 225 GLU n
1 226 ASP n
1 227 ARG n
1 228 ASP n
1 229 VAL n
1 230 THR n
1 231 ASN n
1 232 GLN n
1 233 ARG n
1 234 PRO n
1 235 LYS n
1 236 GLU n
1 237 ARG n
1 238 HIS n
1 239 ARG n
1 240 ARG n
1 241 ASN n
1 242 TYR n
1 243 VAL n
1 244 PRO n
1 245 CYS n
1 246 HIS n
1 247 ILE n
1 248 ARG n
1 249 GLN n
1 250 ILE n
1 251 ILE n
1 252 ASN n
1 253 THR n
1 254 TRP n
1 255 HIS n
1 256 LYS n
1 257 VAL n
1 258 GLY n
1 259 LYS n
1 260 ASN n
1 261 VAL n
1 262 TYR n
1 263 LEU n
1 264 PRO n
1 265 PRO n
1 266 ARG n
1 267 GLU n
1 268 GLY n
1 269 ASP n
1 270 LEU n
1 271 THR n
1 272 CYS n
1 273 ASN n
1 274 SER n
1 275 THR n
1 276 VAL n
1 277 THR n
1 278 SER n
1 279 LEU n
1 280 ILE n
1 281 ALA n
1 282 ASN n
1 283 ILE n
1 284 ASP n
1 285 TRP n
1 286 THR n
1 287 ASP n
1 288 GLY n
1 289 ASN n
1 290 GLN n
1 291 THR n
1 292 ASN n
1 293 ILE n
1 294 THR n
1 295 MET n
1 296 SER n
1 297 ALA n
1 298 GLU n
1 299 VAL n
1 300 ALA n
1 301 GLU n
1 302 LEU n
1 303 TYR n
1 304 ARG n
1 305 LEU n
1 306 GLU n
1 307 LEU n
1 308 GLY n
1 309 ASP n
1 310 TYR n
1 311 LYS n
1 312 LEU n
1 313 VAL n
1 314 GLU n
1 315 ILE n
1 316 THR n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name SIV
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain MAC32H
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'SIMIAN IMMUNODEFICIENCY VIRUS'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11723
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'TRICHOPLUSIA NI'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line 'High Five'
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector PFAST-BAC1
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name PSIVGP120CORE
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
4 oligosaccharide
5 oligosaccharide
6 oligosaccharide
7 oligosaccharide
8 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1221m-1a_1-5]/1-1-2-3/a4-b1_a6-d1_b4-c1' WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}[(6+1)][b-L-Fucp]{}}}' LINUCS PDB-CARE
?
4 3 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0
5 3
'WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-3-4/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1'
WURCS PDB2Glycan 1.1.0
6 3
'[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}[(6+1)][b-L-Fucp]{}}}'
LINUCS PDB-CARE ?
7 4 'DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0
8 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1' WURCS PDB2Glycan 1.1.0
9 4 '[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][b-L-Fucp]{}}}' LINUCS PDB-CARE ?
10 5 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
11 5 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0
12 5 '[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ?
13 6 'DManpa1-2DManpa1-2DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0
14 6 'WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e2-f1'
WURCS PDB2Glycan 1.1.0
15 6
;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][a-D-Manp]{[(2+1)][a-D-Manp]{}}}[(6+1)][a-D-Manp]{}}}}}
;
LINUCS PDB-CARE ?
16 7 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0
17 7 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan
1.1.0
18 7 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE
?
19 8 DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0
20 8 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0
21 8 '[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE
?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ?
3 2 4 FUC C1 O1 1 NAG O6 HO6 sing ?
4 3 2 NAG C1 O1 1 NAG O4 HO4 sing ?
5 3 3 BMA C1 O1 2 NAG O4 HO4 sing ?
6 3 4 MAN C1 O1 3 BMA O3 HO3 sing ?
7 3 5 MAN C1 O1 3 BMA O6 HO6 sing ?
8 3 6 FUC C1 O1 1 NAG O6 HO6 sing ?
9 4 2 NAG C1 O1 1 NAG O4 HO4 sing ?
10 4 3 FUC C1 O1 1 NAG O6 HO6 sing ?
11 5 2 NAG C1 O1 1 NAG O4 HO4 sing ?
12 6 2 NAG C1 O1 1 NAG O4 HO4 sing ?
13 6 3 BMA C1 O1 2 NAG O4 HO4 sing ?
14 6 4 MAN C1 O1 3 BMA O3 HO3 sing ?
15 6 5 MAN C1 O1 4 MAN O2 HO2 sing ?
16 6 6 MAN C1 O1 5 MAN O2 HO2 sing ?
17 6 7 MAN C1 O1 3 BMA O6 HO6 sing ?
18 7 2 NAG C1 O1 1 NAG O4 HO4 sing ?
19 7 3 BMA C1 O1 2 NAG O4 HO4 sing ?
20 7 4 MAN C1 O1 3 BMA O3 HO3 sing ?
21 7 5 MAN C1 O1 3 BMA O6 HO6 sing ?
22 8 2 NAG C1 O1 1 NAG O4 HO4 sing ?
23 8 3 BMA C1 O1 2 NAG O4 HO4 sing ?
24 8 4 MAN C1 O1 3 BMA O6 HO6 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose
'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb
BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose
BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp
BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa
FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose
FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp
FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc
MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa
MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose
MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp
MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 HIS 1 64 64 HIS HIS A . n
A 1 2 MET 2 65 65 MET MET A . n
A 1 3 GLU 3 66 66 GLU GLU A . n
A 1 4 LEU 4 67 67 LEU LEU A . n
A 1 5 ALA 5 68 68 ALA ALA A . n
A 1 6 LEU 6 69 69 LEU LEU A . n
A 1 7 ASN 7 70 70 ASN ASN A . n
A 1 8 VAL 8 71 71 VAL VAL A . n
A 1 9 THR 9 72 72 THR THR A . n
A 1 10 GLU 10 73 73 GLU GLU A . n
A 1 11 SER 11 74 74 SER SER A . n
A 1 12 PHE 12 75 75 PHE PHE A . n
A 1 13 ASP 13 76 76 ASP ASP A . n
A 1 14 ALA 14 77 77 ALA ALA A . n
A 1 15 TRP 15 78 78 TRP TRP A . n
A 1 16 GLU 16 79 79 GLU GLU A . n
A 1 17 ASN 17 80 80 ASN ASN A . n
A 1 18 THR 18 81 81 THR THR A . n
A 1 19 VAL 19 82 82 VAL VAL A . n
A 1 20 THR 20 83 83 THR THR A . n
A 1 21 GLU 21 84 84 GLU GLU A . n
A 1 22 GLN 22 85 85 GLN GLN A . n
A 1 23 ALA 23 86 86 ALA ALA A . n
A 1 24 ILE 24 87 87 ILE ILE A . n
A 1 25 GLU 25 88 88 GLU GLU A . n
A 1 26 ASP 26 89 89 ASP ASP A . n
A 1 27 VAL 27 90 90 VAL VAL A . n
A 1 28 TRP 28 91 91 TRP TRP A . n
A 1 29 GLN 29 92 92 GLN GLN A . n
A 1 30 LEU 30 93 93 LEU LEU A . n
A 1 31 PHE 31 94 94 PHE PHE A . n
A 1 32 GLU 32 95 95 GLU GLU A . n
A 1 33 THR 33 96 96 THR THR A . n
A 1 34 SER 34 97 97 SER SER A . n
A 1 35 ILE 35 98 98 ILE ILE A . n
A 1 36 LYS 36 99 99 LYS LYS A . n
A 1 37 PRO 37 100 100 PRO PRO A . n
A 1 38 CYS 38 101 101 CYS CYS A . n
A 1 39 VAL 39 102 102 VAL VAL A . n
A 1 40 LYS 40 103 103 LYS LYS A . n
A 1 41 LEU 41 104 104 LEU LEU A . n
A 1 42 SER 42 105 105 SER SER A . n
A 1 43 PRO 43 106 106 PRO PRO A . n
A 1 44 LEU 44 107 107 LEU LEU A . n
A 1 45 CYS 45 108 108 CYS CYS A . n
A 1 46 ILE 46 109 109 ILE ILE A . n
A 1 47 GLY 47 110 110 GLY GLY A . n
A 1 48 ALA 48 207 207 ALA ALA A . n
A 1 49 GLY 49 208 208 GLY GLY A . n
A 1 50 HIS 50 209 209 HIS HIS A . n
A 1 51 CYS 51 210 210 CYS CYS A . n
A 1 52 ASN 52 211 211 ASN ASN A . n
A 1 53 THR 53 212 212 THR THR A . n
A 1 54 SER 54 213 213 SER SER A . n
A 1 55 ILE 55 214 214 ILE ILE A . n
A 1 56 ILE 56 215 215 ILE ILE A . n
A 1 57 GLN 57 216 216 GLN GLN A . n
A 1 58 GLU 58 217 217 GLU GLU A . n
A 1 59 SER 59 218 218 SER SER A . n
A 1 60 CYS 60 219 219 CYS CYS A . n
A 1 61 ASP 61 220 ? ? ? A . n
A 1 62 LYS 62 221 ? ? ? A . n
A 1 63 HIS 63 222 ? ? ? A . n
A 1 64 TYR 64 223 ? ? ? A . n
A 1 65 TRP 65 224 ? ? ? A . n
A 1 66 ASP 66 225 ? ? ? A . n
A 1 67 THR 67 226 ? ? ? A . n
A 1 68 ILE 68 227 ? ? ? A . n
A 1 69 ARG 69 228 ? ? ? A . n
A 1 70 PHE 70 229 229 PHE PHE A . n
A 1 71 ARG 71 230 230 ARG ARG A . n
A 1 72 TYR 72 231 231 TYR TYR A . n
A 1 73 CYS 73 232 232 CYS CYS A . n
A 1 74 ALA 74 233 233 ALA ALA A . n
A 1 75 PRO 75 234 234 PRO PRO A . n
A 1 76 PRO 76 235 235 PRO PRO A . n
A 1 77 GLY 77 236 236 GLY GLY A . n
A 1 78 TYR 78 237 237 TYR TYR A . n
A 1 79 ALA 79 238 238 ALA ALA A . n
A 1 80 LEU 80 239 239 LEU LEU A . n
A 1 81 LEU 81 240 240 LEU LEU A . n
A 1 82 ARG 82 241 241 ARG ARG A . n
A 1 83 CYS 83 242 242 CYS CYS A . n
A 1 84 ASN 84 243 243 ASN ASN A . n
A 1 85 ASP 85 244 244 ASP ASP A . n
A 1 86 THR 86 245 245 THR THR A . n
A 1 87 ASN 87 246 246 ASN ASN A . n
A 1 88 TYR 88 247 247 TYR TYR A . n
A 1 89 SER 89 248 248 SER SER A . n
A 1 90 GLY 90 249 249 GLY GLY A . n
A 1 91 PHE 91 250 250 PHE PHE A . n
A 1 92 MET 92 251 251 MET MET A . n
A 1 93 PRO 93 252 252 PRO PRO A . n
A 1 94 LYS 94 253 253 LYS LYS A . n
A 1 95 CYS 95 254 254 CYS CYS A . n
A 1 96 SER 96 255 255 SER SER A . n
A 1 97 LYS 97 256 256 LYS LYS A . n
A 1 98 VAL 98 257 257 VAL VAL A . n
A 1 99 VAL 99 258 258 VAL VAL A . n
A 1 100 VAL 100 259 259 VAL VAL A . n
A 1 101 SER 101 260 260 SER SER A . n
A 1 102 SER 102 261 261 SER SER A . n
A 1 103 CYS 103 262 262 CYS CYS A . n
A 1 104 THR 104 263 263 THR THR A . n
A 1 105 ARG 105 264 264 ARG ARG A . n
A 1 106 MET 106 265 265 MET MET A . n
A 1 107 MET 107 266 266 MET MET A . n
A 1 108 GLU 108 267 267 GLU GLU A . n
A 1 109 THR 109 268 268 THR THR A . n
A 1 110 GLN 110 269 269 GLN GLN A . n
A 1 111 THR 111 270 270 THR THR A . n
A 1 112 SER 112 271 271 SER SER A . n
A 1 113 THR 113 272 272 THR THR A . n
A 1 114 TRP 114 273 273 TRP TRP A . n
A 1 115 PHE 115 274 274 PHE PHE A . n
A 1 116 GLY 116 275 275 GLY GLY A . n
A 1 117 PHE 117 276 276 PHE PHE A . n
A 1 118 ASN 118 277 277 ASN ASN A . n
A 1 119 GLY 119 278 278 GLY GLY A . n
A 1 120 THR 120 279 279 THR THR A . n
A 1 121 ARG 121 280 280 ARG ARG A . n
A 1 122 ALA 122 281 281 ALA ALA A . n
A 1 123 GLU 123 282 282 GLU GLU A . n
A 1 124 ASN 124 283 283 ASN ASN A . n
A 1 125 ARG 125 284 284 ARG ARG A . n
A 1 126 THR 126 285 285 THR THR A . n
A 1 127 TYR 127 286 286 TYR TYR A . n
A 1 128 ILE 128 287 287 ILE ILE A . n
A 1 129 TYR 129 288 288 TYR TYR A . n
A 1 130 TRP 130 289 289 TRP TRP A . n
A 1 131 HIS 131 290 290 HIS HIS A . n
A 1 132 GLY 132 291 291 GLY GLY A . n
A 1 133 ARG 133 292 292 ARG ARG A . n
A 1 134 ASP 134 293 293 ASP ASP A . n
A 1 135 ASN 135 294 294 ASN ASN A . n
A 1 136 ARG 136 295 295 ARG ARG A . n
A 1 137 THR 137 296 296 THR THR A . n
A 1 138 ILE 138 297 297 ILE ILE A . n
A 1 139 ILE 139 298 298 ILE ILE A . n
A 1 140 SER 140 299 299 SER SER A . n
A 1 141 LEU 141 300 300 LEU LEU A . n
A 1 142 ASN 142 301 301 ASN ASN A . n
A 1 143 LYS 143 302 302 LYS LYS A . n
A 1 144 TYR 144 303 303 TYR TYR A . n
A 1 145 TYR 145 304 304 TYR TYR A . n
A 1 146 ASN 146 305 305 ASN ASN A . n
A 1 147 LEU 147 306 306 LEU LEU A . n
A 1 148 THR 148 307 307 THR THR A . n
A 1 149 MET 149 308 308 MET MET A . n
A 1 150 LYS 150 309 309 LYS LYS A . n
A 1 151 CYS 151 310 310 CYS CYS A . n
A 1 152 ARG 152 311 311 ARG ARG A . n
A 1 153 GLY 153 312 312 GLY GLY A . n
A 1 154 ALA 154 313 313 ALA ALA A . n
A 1 155 GLY 155 341 341 GLY GLY A . n
A 1 156 TRP 156 342 342 TRP TRP A . n
A 1 157 CYS 157 343 343 CYS CYS A . n
A 1 158 TRP 158 344 344 TRP TRP A . n
A 1 159 PHE 159 345 345 PHE PHE A . n
A 1 160 GLY 160 346 346 GLY GLY A . n
A 1 161 GLY 161 347 347 GLY GLY A . n
A 1 162 ASN 162 348 348 ASN ASN A . n
A 1 163 TRP 163 349 349 TRP TRP A . n
A 1 164 LYS 164 350 350 LYS LYS A . n
A 1 165 ASP 165 351 351 ASP ASP A . n
A 1 166 ALA 166 352 352 ALA ALA A . n
A 1 167 ILE 167 353 353 ILE ILE A . n
A 1 168 LYS 168 354 354 LYS LYS A . n
A 1 169 GLU 169 355 355 GLU GLU A . n
A 1 170 MET 170 356 356 MET MET A . n
A 1 171 LYS 171 357 357 LYS LYS A . n
A 1 172 GLN 172 358 358 GLN GLN A . n
A 1 173 THR 173 359 359 THR THR A . n
A 1 174 ILE 174 360 360 ILE ILE A . n
A 1 175 VAL 175 361 361 VAL VAL A . n
A 1 176 LYS 176 362 362 LYS LYS A . n
A 1 177 HIS 177 363 363 HIS HIS A . n
A 1 178 PRO 178 364 364 PRO PRO A . n
A 1 179 ARG 179 365 365 ARG ARG A . n
A 1 180 TYR 180 366 366 TYR TYR A . n
A 1 181 THR 181 367 367 THR THR A . n
A 1 182 GLY 182 368 368 GLY GLY A . n
A 1 183 THR 183 369 369 THR THR A . n
A 1 184 ASN 184 370 370 ASN ASN A . n
A 1 185 ASN 185 371 371 ASN ASN A . n
A 1 186 THR 186 372 372 THR THR A . n
A 1 187 ASP 187 373 373 ASP ASP A . n
A 1 188 LYS 188 374 374 LYS LYS A . n
A 1 189 ILE 189 375 375 ILE ILE A . n
A 1 190 ASN 190 376 376 ASN ASN A . n
A 1 191 LEU 191 377 377 LEU LEU A . n
A 1 192 THR 192 378 378 THR THR A . n
A 1 193 ALA 193 379 379 ALA ALA A . n
A 1 194 PRO 194 380 380 PRO PRO A . n
A 1 195 ARG 195 381 381 ARG ARG A . n
A 1 196 GLY 196 382 382 GLY GLY A . n
A 1 197 GLY 197 383 383 GLY GLY A . n
A 1 198 ASP 198 384 384 ASP ASP A . n
A 1 199 PRO 199 385 385 PRO PRO A . n
A 1 200 GLU 200 386 386 GLU GLU A . n
A 1 201 VAL 201 387 387 VAL VAL A . n
A 1 202 THR 202 388 388 THR THR A . n
A 1 203 PHE 203 389 389 PHE PHE A . n
A 1 204 MET 204 390 390 MET MET A . n
A 1 205 TRP 205 391 391 TRP TRP A . n
A 1 206 THR 206 392 392 THR THR A . n
A 1 207 ASN 207 393 393 ASN ASN A . n
A 1 208 CYS 208 394 394 CYS CYS A . n
A 1 209 ARG 209 395 395 ARG ARG A . n
A 1 210 GLY 210 396 396 GLY GLY A . n
A 1 211 GLU 211 397 397 GLU GLU A . n
A 1 212 PHE 212 398 398 PHE PHE A . n
A 1 213 LEU 213 399 399 LEU LEU A . n
A 1 214 TYR 214 400 400 TYR TYR A . n
A 1 215 CYS 215 401 401 CYS CYS A . n
A 1 216 LYS 216 402 402 LYS LYS A . n
A 1 217 MET 217 403 403 MET MET A . n
A 1 218 ASN 218 404 404 ASN ASN A . n
A 1 219 TRP 219 405 405 TRP TRP A . n
A 1 220 PHE 220 406 406 PHE PHE A . n
A 1 221 LEU 221 407 407 LEU LEU A . n
A 1 222 ASN 222 408 408 ASN ASN A . n
A 1 223 TRP 223 409 409 TRP TRP A . n
A 1 224 VAL 224 410 410 VAL VAL A . n
A 1 225 GLU 225 411 411 GLU GLU A . n
A 1 226 ASP 226 412 412 ASP ASP A . n
A 1 227 ARG 227 413 413 ARG ARG A . n
A 1 228 ASP 228 414 414 ASP ASP A . n
A 1 229 VAL 229 415 415 VAL VAL A . n
A 1 230 THR 230 416 416 THR THR A . n
A 1 231 ASN 231 417 417 ASN ASN A . n
A 1 232 GLN 232 418 418 GLN GLN A . n
A 1 233 ARG 233 419 419 ARG ARG A . n
A 1 234 PRO 234 420 420 PRO PRO A . n
A 1 235 LYS 235 421 421 LYS LYS A . n
A 1 236 GLU 236 422 422 GLU GLU A . n
A 1 237 ARG 237 423 423 ARG ARG A . n
A 1 238 HIS 238 424 424 HIS HIS A . n
A 1 239 ARG 239 425 425 ARG ARG A . n
A 1 240 ARG 240 426 426 ARG ARG A . n
A 1 241 ASN 241 427 427 ASN ASN A . n
A 1 242 TYR 242 428 428 TYR TYR A . n
A 1 243 VAL 243 429 429 VAL VAL A . n
A 1 244 PRO 244 430 430 PRO PRO A . n
A 1 245 CYS 245 431 431 CYS CYS A . n
A 1 246 HIS 246 432 432 HIS HIS A . n
A 1 247 ILE 247 433 433 ILE ILE A . n
A 1 248 ARG 248 434 434 ARG ARG A . n
A 1 249 GLN 249 435 435 GLN GLN A . n
A 1 250 ILE 250 436 436 ILE ILE A . n
A 1 251 ILE 251 437 437 ILE ILE A . n
A 1 252 ASN 252 438 438 ASN ASN A . n
A 1 253 THR 253 439 439 THR THR A . n
A 1 254 TRP 254 440 440 TRP TRP A . n
A 1 255 HIS 255 441 441 HIS HIS A . n
A 1 256 LYS 256 442 442 LYS LYS A . n
A 1 257 VAL 257 443 443 VAL VAL A . n
A 1 258 GLY 258 444 444 GLY GLY A . n
A 1 259 LYS 259 445 445 LYS LYS A . n
A 1 260 ASN 260 446 446 ASN ASN A . n
A 1 261 VAL 261 447 447 VAL VAL A . n
A 1 262 TYR 262 448 448 TYR TYR A . n
A 1 263 LEU 263 449 449 LEU LEU A . n
A 1 264 PRO 264 450 450 PRO PRO A . n
A 1 265 PRO 265 451 451 PRO PRO A . n
A 1 266 ARG 266 452 452 ARG ARG A . n
A 1 267 GLU 267 453 453 GLU GLU A . n
A 1 268 GLY 268 454 454 GLY GLY A . n
A 1 269 ASP 269 455 455 ASP ASP A . n
A 1 270 LEU 270 456 456 LEU LEU A . n
A 1 271 THR 271 457 457 THR THR A . n
A 1 272 CYS 272 458 458 CYS CYS A . n
A 1 273 ASN 273 459 459 ASN ASN A . n
A 1 274 SER 274 460 460 SER SER A . n
A 1 275 THR 275 461 461 THR THR A . n
A 1 276 VAL 276 462 462 VAL VAL A . n
A 1 277 THR 277 463 463 THR THR A . n
A 1 278 SER 278 464 464 SER SER A . n
A 1 279 LEU 279 465 465 LEU LEU A . n
A 1 280 ILE 280 466 466 ILE ILE A . n
A 1 281 ALA 281 467 467 ALA ALA A . n
A 1 282 ASN 282 468 468 ASN ASN A . n
A 1 283 ILE 283 469 469 ILE ILE A . n
A 1 284 ASP 284 470 470 ASP ASP A . n
A 1 285 TRP 285 471 471 TRP TRP A . n
A 1 286 THR 286 472 472 THR THR A . n
A 1 287 ASP 287 473 473 ASP ASP A . n
A 1 288 GLY 288 474 474 GLY GLY A . n
A 1 289 ASN 289 475 475 ASN ASN A . n
A 1 290 GLN 290 476 476 GLN GLN A . n
A 1 291 THR 291 477 477 THR THR A . n
A 1 292 ASN 292 478 478 ASN ASN A . n
A 1 293 ILE 293 479 479 ILE ILE A . n
A 1 294 THR 294 480 480 THR THR A . n
A 1 295 MET 295 481 481 MET MET A . n
A 1 296 SER 296 482 482 SER SER A . n
A 1 297 ALA 297 483 483 ALA ALA A . n
A 1 298 GLU 298 484 484 GLU GLU A . n
A 1 299 VAL 299 485 485 VAL VAL A . n
A 1 300 ALA 300 486 486 ALA ALA A . n
A 1 301 GLU 301 487 487 GLU GLU A . n
A 1 302 LEU 302 488 488 LEU LEU A . n
A 1 303 TYR 303 489 489 TYR TYR A . n
A 1 304 ARG 304 490 490 ARG ARG A . n
A 1 305 LEU 305 491 491 LEU LEU A . n
A 1 306 GLU 306 492 492 GLU GLU A . n
A 1 307 LEU 307 493 493 LEU LEU A . n
A 1 308 GLY 308 494 494 GLY GLY A . n
A 1 309 ASP 309 495 495 ASP ASP A . n
A 1 310 TYR 310 496 496 TYR TYR A . n
A 1 311 LYS 311 497 497 LYS LYS A . n
A 1 312 LEU 312 498 498 LEU LEU A . n
A 1 313 VAL 313 499 499 VAL VAL A . n
A 1 314 GLU 314 500 ? ? ? A . n
A 1 315 ILE 315 501 ? ? ? A . n
A 1 316 THR 316 502 ? ? ? A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 A NDG 1502 n
B 2 NAG 2 B NAG 2 A NAG 1503 n
B 2 BMA 3 B BMA 3 A BMA 1504 n
B 2 FUC 4 B FUC 4 A FUC 1505 n
C 3 NAG 1 C NAG 1 A NAG 1506 n
C 3 NAG 2 C NAG 2 A NAG 1507 n
C 3 BMA 3 C BMA 3 A BMA 1508 n
C 3 MAN 4 C MAN 4 A MAN 1509 n
C 3 MAN 5 C MAN 5 A MAN 1510 n
C 3 FUC 6 C FUC 6 A FUC 1511 n
D 4 NAG 1 D NAG 1 A NDG 1512 n
D 4 NAG 2 D NAG 2 A NAG 1513 n
D 4 FUC 3 D FUC 3 A FUC 1514 n
E 4 NAG 1 E NAG 1 A NDG 1515 n
E 4 NAG 2 E NAG 2 A NAG 1516 n
E 4 FUC 3 E FUC 3 A FUC 1517 n
F 2 NAG 1 F NAG 1 A NAG 1518 n
F 2 NAG 2 F NAG 2 A NAG 1519 n
F 2 BMA 3 F BMA 3 A BMA 1520 n
F 2 FUC 4 F FUC 4 A FUC 1521 n
G 5 NAG 1 G NAG 1 A NDG 1522 n
G 5 NAG 2 G NAG 2 A NAG 1523 n
H 2 NAG 1 H NAG 1 A NDG 1524 n
H 2 NAG 2 H NAG 2 A NAG 1525 n
H 2 BMA 3 H BMA 3 A BMA 1526 n
H 2 FUC 4 H FUC 4 A FUC 1527 n
I 6 NAG 1 I NAG 1 A NAG 1528 n
I 6 NAG 2 I NAG 2 A NAG 1529 n
I 6 BMA 3 I BMA 3 A BMA 1530 n
I 6 MAN 4 I MAN 4 A MAN 1531 n
I 6 MAN 5 I MAN 5 A MAN 1532 n
I 6 MAN 6 I MAN 6 A MAN 1533 n
I 6 MAN 7 I MAN 7 A MAN 1534 n
J 7 NAG 1 J NAG 1 A NAG 1535 n
J 7 NAG 2 J NAG 2 A NAG 1536 n
J 7 BMA 3 J BMA 3 A BMA 1537 n
J 7 MAN 4 J MAN 4 A MAN 1538 n
J 7 MAN 5 J MAN 5 A MAN 1539 n
K 3 NAG 1 K NAG 1 A NAG 1540 n
K 3 NAG 2 K NAG 2 A NAG 1541 n
K 3 BMA 3 K BMA 3 A BMA 1542 n
K 3 MAN 4 K MAN 4 A MAN 1543 n
K 3 MAN 5 K MAN 5 A MAN 1544 n
K 3 FUC 6 K FUC 6 A FUC 1545 n
L 8 NAG 1 L NAG 1 A NDG 1546 n
L 8 NAG 2 L NAG 2 A NAG 1547 n
L 8 BMA 3 L BMA 3 A BMA 1548 n
L 8 MAN 4 L MAN 4 A MAN 1549 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 9 NAG 1 1500 1500 NAG NAG A .
N 9 NAG 1 1501 1501 NAG NAG A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
_software.date
_software.type
_software.location
_software.language
DENZO 'data reduction' . ? 1 ? ? ? ?
SCALEPACK 'data scaling' . ? 2 ? ? ? ?
SOLVE phasing . ? 3 ? ? ? ?
SHARP phasing . ? 4 ? ? ? ?
REFMAC refinement 5.2.0003 ? 5 ? ? ? ?
#
_cell.entry_id 2BF1
_cell.length_a 108.048
_cell.length_b 108.048
_cell.length_c 117.701
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2BF1
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
#
_exptl.entry_id 2BF1
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 3.98
_exptl_crystal.density_percent_sol 68.8
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.00
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
'PROTEIN WAS CRYSTALLIZED FROM 15% PEG 6000, 100 MM SODIUM CITRATE, PH 5.0 AND 8% PEG 400 AT 20 DEGREES C.'
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC CCD'
_diffrn_detector.pdbx_collection_date 2002-10-07
_diffrn_detector.details 'RH-COATED SI MIRROR'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'BENT TRIANGULAR ASYMMETRIC CUT SI(111) MONOCHROMATER'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.916
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'CHESS BEAMLINE F1'
_diffrn_source.pdbx_synchrotron_site CHESS
_diffrn_source.pdbx_synchrotron_beamline F1
_diffrn_source.pdbx_wavelength 0.916
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 2BF1
_reflns.observed_criterion_sigma_I 0.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 26.000
_reflns.d_resolution_high 4.000
_reflns.number_obs 100402
_reflns.number_all ?
_reflns.percent_possible_obs 98.0
_reflns.pdbx_Rmerge_I_obs 0.08000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 12.0000
_reflns.B_iso_Wilson_estimate 141.10
_reflns.pdbx_redundancy 4.500
_reflns.pdbx_CC_half ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_Rrim_I_all ?
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 4.00
_reflns_shell.d_res_low 4.09
_reflns_shell.percent_possible_all 94.3
_reflns_shell.Rmerge_I_obs 0.82000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 1.300
_reflns_shell.pdbx_redundancy 4.00
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_Rrim_I_all ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 2BF1
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 5842
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 26.00
_refine.ls_d_res_high 4.00
_refine.ls_percent_reflns_obs 98.0
_refine.ls_R_factor_obs 0.385
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.385
_refine.ls_R_factor_R_free 0.388
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.600
_refine.ls_number_reflns_R_free 279
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.809
_refine.correlation_coeff_Fo_to_Fc_free 0.857
_refine.B_iso_mean 128.80
_refine.aniso_B[1][1] 0.01000
_refine.aniso_B[2][2] 0.01000
_refine.aniso_B[3][3] -0.03000
_refine.aniso_B[1][2] 0.00000
_refine.aniso_B[1][3] 0.00000
_refine.aniso_B[2][3] 0.00000
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 3.00
_refine.pdbx_solvent_ion_probe_radii 3.00
_refine.pdbx_solvent_shrinkage_radii 2.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details
;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. PLEASE NOTE THAT BECAUSE OF THE LOW RESOLUTION OF THE EXPERIMENTAL DATA USED TO DETERMINE THIS STRUCTURE, THE PRECISION OF THE MODEL, PARTICULARLY WITH RESPECT TO SIDE CHAIN POSITIONS, IS REDUCED.
;
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct MIRAS
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOODWITH PHASES'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free 1.153
_refine.overall_SU_ML 1.697
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 269.262
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2471
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 615
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 3086
_refine_hist.d_res_high 4.00
_refine_hist.d_res_low 26.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.014 0.021 ? 3207 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.067 2.150 ? 4433 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 8.116 5.000 ? 302 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 45.267 23.600 ? 125 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 24.209 15.000 ? 426 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 18.610 15.000 ? 19 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.112 0.200 ? 604 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.005 0.020 ? 2043 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.341 0.200 ? 1715 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.344 0.200 ? 2100 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.268 0.200 ? 112 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.368 0.200 ? 82 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.194 0.200 ? 6 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 4.00
_refine_ls_shell.d_res_low 4.37
_refine_ls_shell.number_reflns_R_work 1309
_refine_ls_shell.R_factor_R_work 0.4030
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.5330
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 67
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_database_PDB_matrix.entry_id 2BF1
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2BF1
_struct.title 'Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2BF1
_struct_keywords.pdbx_keywords 'VIRUS PROTEIN'
_struct_keywords.text 'VIRUS PROTEIN, SIV, GP120, ENVELOPE GLYCOPROTEIN, AIDS, COAT PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
F N N 2 ?
G N N 5 ?
H N N 2 ?
I N N 6 ?
J N N 7 ?
K N N 3 ?
L N N 8 ?
M N N 9 ?
N N N 9 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
1 PDB 2BF1 1 ? ? 2BF1 ?
2 UNP Q07374 1 ? ? Q07374 ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 2BF1 A 1 ? 2 ? 2BF1 64 ? 65 ? 64 65
2 2 2BF1 A 3 ? 46 ? Q07374 66 ? 109 ? 66 109
3 1 2BF1 A 47 ? 47 ? 2BF1 110 ? 110 ? 110 110
4 1 2BF1 A 48 ? 49 ? 2BF1 207 ? 208 ? 207 208
5 2 2BF1 A 50 ? 152 ? Q07374 209 ? 311 ? 209 311
6 1 2BF1 A 153 ? 154 ? 2BF1 312 ? 313 ? 312 313
7 1 2BF1 A 155 ? 155 ? 2BF1 341 ? 341 ? 341 341
8 2 2BF1 A 156 ? 316 ? Q07374 342 ? 502 ? 342 502
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PQS
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details
;ALTHOUGH THIS ENTRY DESCRIBES THE MONOMERIC
STRUCTURE OFGP120, A THEORETICAL MODEL OF THE
TRIMERIC FORM OF THEPROTEIN HAS BEEN GENERATED.
THE DETAILS OF THE TRIMER ANDTHE MATRICES RELATING
CHAIN A OF THIS ENTRY TO THECONSTITUENTS OF
THE TRIMERIC STRUCTURE CAN BE FOUND INREMARK 400
BELOW.
;
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ASN A 17 ? GLU A 32 ? ASN A 80 GLU A 95 1 ? 16
HELX_P HELX_P2 2 MET A 106 ? THR A 109 ? MET A 265 THR A 268 1 ? 4
HELX_P HELX_P3 3 ASN A 162 ? HIS A 177 ? ASN A 348 HIS A 363 1 ? 16
HELX_P HELX_P4 4 ASN A 218 ? LEU A 221 ? ASN A 404 LEU A 407 1 ? 4
HELX_P HELX_P5 5 VAL A 299 ? LEU A 307 ? VAL A 485 LEU A 493 1 ? 9
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 60 SG ? ? A CYS 101 A CYS 219 1_555 ? ? ? ? ? ? ? 2.019 ? ?
disulf2 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 108 A CYS 210 1_555 ? ? ? ? ? ? ? 2.027 ? ?
disulf3 disulf ? ? A CYS 73 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 232 A CYS 262 1_555 ? ? ? ? ? ? ? 2.042 ? ?
disulf4 disulf ? ? A CYS 83 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 242 A CYS 254 1_555 ? ? ? ? ? ? ? 2.022 ? ?
disulf5 disulf ? ? A CYS 151 SG ? ? ? 1_555 A CYS 157 SG ? ? A CYS 310 A CYS 343 1_555 ? ? ? ? ? ? ? 2.050 ? ?
disulf6 disulf ? ? A CYS 208 SG ? ? ? 1_555 A CYS 272 SG ? ? A CYS 394 A CYS 458 1_555 ? ? ? ? ? ? ? 2.036 ? ?
disulf7 disulf ? ? A CYS 215 SG ? ? ? 1_555 A CYS 245 SG ? ? A CYS 401 A CYS 431 1_555 ? ? ? ? ? ? ? 2.042 ? ?
covale1 covale one ? A ASN 7 ND2 ? ? ? 1_555 M NAG . C1 ? ? A ASN 70 A NAG 1500 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation
covale2 covale one ? A ASN 52 ND2 ? ? ? 1_555 N NAG . C1 ? ? A ASN 211 A NAG 1501 1_555 ? ? ? ? ? ? ? 1.461 ? N-Glycosylation
covale3 covale one ? A ASN 84 ND2 ? ? ? 1_555 K NAG . C1 ? ? A ASN 243 K NAG 1 1_555 ? ? ? ? ? ? ? 1.460 ? N-Glycosylation
covale4 covale one ? A ASN 87 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 246 B NAG 1 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation
covale5 covale one ? A ASN 118 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 277 C NAG 1 1_555 ? ? ? ? ? ? ? 1.434 ? N-Glycosylation
covale6 covale one ? A ASN 124 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 283 D NAG 1 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation
covale7 covale one ? A ASN 135 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 294 E NAG 1 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation
covale8 covale one ? A ASN 146 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 305 F NAG 1 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation
covale9 covale one ? A ASN 184 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 370 G NAG 1 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation
covale10 covale one ? A ASN 190 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 376 H NAG 1 1_555 ? ? ? ? ? ? ? 1.462 ? N-Glycosylation
covale11 covale one ? A ASN 273 ND2 ? ? ? 1_555 I NAG . C1 ? ? A ASN 459 I NAG 1 1_555 ? ? ? ? ? ? ? 1.464 ? N-Glycosylation
covale12 covale one ? A ASN 289 ND2 ? ? ? 1_555 J NAG . C1 ? ? A ASN 475 J NAG 1 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation
covale13 covale one ? A ASN 292 ND2 ? ? ? 1_555 L NAG . C1 ? ? A ASN 478 L NAG 1 1_555 ? ? ? ? ? ? ? 1.431 ? N-Glycosylation
covale14 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.453 ? ?
covale15 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 4 1_555 ? ? ? ? ? ? ? 1.418 ? ?
covale16 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.448 ? ?
covale17 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.458 ? ?
covale18 covale both ? C NAG . O6 ? ? ? 1_555 C FUC . C1 ? ? C NAG 1 C FUC 6 1_555 ? ? ? ? ? ? ? 1.428 ? ?
covale19 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.458 ? ?
covale20 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.454 ? ?
covale21 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 5 1_555 ? ? ? ? ? ? ? 1.448 ? ?
covale22 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.461 ? ?
covale23 covale both ? D NAG . O6 ? ? ? 1_555 D FUC . C1 ? ? D NAG 1 D FUC 3 1_555 ? ? ? ? ? ? ? 1.443 ? ?
covale24 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.452 ? ?
covale25 covale both ? E NAG . O6 ? ? ? 1_555 E FUC . C1 ? ? E NAG 1 E FUC 3 1_555 ? ? ? ? ? ? ? 1.455 ? ?
covale26 covale both ? F NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.431 ? ?
covale27 covale both ? F NAG . O6 ? ? ? 1_555 F FUC . C1 ? ? F NAG 1 F FUC 4 1_555 ? ? ? ? ? ? ? 1.438 ? ?
covale28 covale both ? F NAG . O4 ? ? ? 1_555 F BMA . C1 ? ? F NAG 2 F BMA 3 1_555 ? ? ? ? ? ? ? 1.452 ? ?
covale29 covale both ? G NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? G NAG 1 G NAG 2 1_555 ? ? ? ? ? ? ? 1.428 ? ?
covale30 covale both ? H NAG . O4 ? ? ? 1_555 H NAG . C1 ? ? H NAG 1 H NAG 2 1_555 ? ? ? ? ? ? ? 1.446 ? ?
covale31 covale both ? H NAG . O6 ? ? ? 1_555 H FUC . C1 ? ? H NAG 1 H FUC 4 1_555 ? ? ? ? ? ? ? 1.442 ? ?
covale32 covale both ? H NAG . O4 ? ? ? 1_555 H BMA . C1 ? ? H NAG 2 H BMA 3 1_555 ? ? ? ? ? ? ? 1.466 ? ?
covale33 covale both ? I NAG . O4 ? ? ? 1_555 I NAG . C1 ? ? I NAG 1 I NAG 2 1_555 ? ? ? ? ? ? ? 1.451 ? ?
covale34 covale both ? I NAG . O4 ? ? ? 1_555 I BMA . C1 ? ? I NAG 2 I BMA 3 1_555 ? ? ? ? ? ? ? 1.446 ? ?
covale35 covale both ? I BMA . O3 ? ? ? 1_555 I MAN . C1 ? ? I BMA 3 I MAN 4 1_555 ? ? ? ? ? ? ? 1.459 ? ?
covale36 covale both ? I BMA . O6 ? ? ? 1_555 I MAN . C1 ? ? I BMA 3 I MAN 7 1_555 ? ? ? ? ? ? ? 1.446 ? ?
covale37 covale both ? I MAN . O2 ? ? ? 1_555 I MAN . C1 ? ? I MAN 4 I MAN 5 1_555 ? ? ? ? ? ? ? 1.537 ? ?
covale38 covale both ? I MAN . O2 ? ? ? 1_555 I MAN . C1 ? ? I MAN 5 I MAN 6 1_555 ? ? ? ? ? ? ? 1.614 ? ?
covale39 covale both ? J NAG . O4 ? ? ? 1_555 J NAG . C1 ? ? J NAG 1 J NAG 2 1_555 ? ? ? ? ? ? ? 1.460 ? ?
covale40 covale both ? J NAG . O4 ? ? ? 1_555 J BMA . C1 ? ? J NAG 2 J BMA 3 1_555 ? ? ? ? ? ? ? 1.467 ? ?
covale41 covale both ? J BMA . O3 ? ? ? 1_555 J MAN . C1 ? ? J BMA 3 J MAN 4 1_555 ? ? ? ? ? ? ? 1.460 ? ?
covale42 covale both ? J BMA . O6 ? ? ? 1_555 J MAN . C1 ? ? J BMA 3 J MAN 5 1_555 ? ? ? ? ? ? ? 1.444 ? ?
covale43 covale both ? K NAG . O4 ? ? ? 1_555 K NAG . C1 ? ? K NAG 1 K NAG 2 1_555 ? ? ? ? ? ? ? 1.451 ? ?
covale44 covale both ? K NAG . O6 ? ? ? 1_555 K FUC . C1 ? ? K NAG 1 K FUC 6 1_555 ? ? ? ? ? ? ? 1.448 ? ?
covale45 covale both ? K NAG . O4 ? ? ? 1_555 K BMA . C1 ? ? K NAG 2 K BMA 3 1_555 ? ? ? ? ? ? ? 1.450 ? ?
covale46 covale both ? K BMA . O3 ? ? ? 1_555 K MAN . C1 ? ? K BMA 3 K MAN 4 1_555 ? ? ? ? ? ? ? 1.456 ? ?
covale47 covale both ? K BMA . O6 ? ? ? 1_555 K MAN . C1 ? ? K BMA 3 K MAN 5 1_555 ? ? ? ? ? ? ? 1.451 ? ?
covale48 covale both ? L NAG . O4 ? ? ? 1_555 L NAG . C1 ? ? L NAG 1 L NAG 2 1_555 ? ? ? ? ? ? ? 1.457 ? ?
covale49 covale both ? L NAG . O4 ? ? ? 1_555 L BMA . C1 ? ? L NAG 2 L BMA 3 1_555 ? ? ? ? ? ? ? 1.448 ? ?
covale50 covale both ? L BMA . O6 ? ? ? 1_555 L MAN . C1 ? ? L BMA 3 L MAN 4 1_555 ? ? ? ? ? ? ? 1.454 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG B . ? ASN A 87 ? NAG B 1 ? 1_555 ASN A 246 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG C . ? ASN A 118 ? NAG C 1 ? 1_555 ASN A 277 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 NAG D . ? ASN A 124 ? NAG D 1 ? 1_555 ASN A 283 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
4 NAG E . ? ASN A 135 ? NAG E 1 ? 1_555 ASN A 294 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
5 NAG F . ? ASN A 146 ? NAG F 1 ? 1_555 ASN A 305 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
6 NAG G . ? ASN A 184 ? NAG G 1 ? 1_555 ASN A 370 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
7 NAG H . ? ASN A 190 ? NAG H 1 ? 1_555 ASN A 376 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
8 NAG I . ? ASN A 273 ? NAG I 1 ? 1_555 ASN A 459 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
9 NAG J . ? ASN A 289 ? NAG J 1 ? 1_555 ASN A 475 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
10 NAG K . ? ASN A 84 ? NAG K 1 ? 1_555 ASN A 243 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
11 NAG L . ? ASN A 292 ? NAG L 1 ? 1_555 ASN A 478 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
12 NAG M . ? ASN A 7 ? NAG A 1500 ? 1_555 ASN A 70 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
13 NAG N . ? ASN A 52 ? NAG A 1501 ? 1_555 ASN A 211 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
14 CYS A 38 ? CYS A 60 ? CYS A 101 ? 1_555 CYS A 219 ? 1_555 SG SG . . . None 'Disulfide bridge'
15 CYS A 45 ? CYS A 51 ? CYS A 108 ? 1_555 CYS A 210 ? 1_555 SG SG . . . None 'Disulfide bridge'
16 CYS A 73 ? CYS A 103 ? CYS A 232 ? 1_555 CYS A 262 ? 1_555 SG SG . . . None 'Disulfide bridge'
17 CYS A 83 ? CYS A 95 ? CYS A 242 ? 1_555 CYS A 254 ? 1_555 SG SG . . . None 'Disulfide bridge'
18 CYS A 151 ? CYS A 157 ? CYS A 310 ? 1_555 CYS A 343 ? 1_555 SG SG . . . None 'Disulfide bridge'
19 CYS A 208 ? CYS A 272 ? CYS A 394 ? 1_555 CYS A 458 ? 1_555 SG SG . . . None 'Disulfide bridge'
20 CYS A 215 ? CYS A 245 ? CYS A 401 ? 1_555 CYS A 431 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA ? 2 ?
AB ? 3 ?
AC ? 7 ?
AD ? 6 ?
AE ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA 1 2 ? anti-parallel
AB 1 2 ? anti-parallel
AB 2 3 ? anti-parallel
AC 1 2 ? anti-parallel
AC 2 3 ? anti-parallel
AC 3 4 ? anti-parallel
AC 4 5 ? anti-parallel
AC 5 6 ? anti-parallel
AC 6 7 ? anti-parallel
AD 1 2 ? anti-parallel
AD 2 3 ? anti-parallel
AD 3 4 ? anti-parallel
AD 4 5 ? parallel
AD 5 6 ? anti-parallel
AE 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA 1 VAL A 39 ? LEU A 44 ? VAL A 102 LEU A 107
AA 2 ASN A 52 ? GLN A 57 ? ASN A 211 GLN A 216
AB 1 LYS A 97 ? SER A 102 ? LYS A 256 SER A 261
AB 2 ALA A 79 ? CYS A 83 ? ALA A 238 CYS A 242
AB 3 LYS A 311 ? VAL A 313 ? LYS A 497 VAL A 499
AC 1 GLN A 110 ? THR A 113 ? GLN A 269 THR A 272
AC 2 THR A 202 ? CYS A 208 ? THR A 388 CYS A 394
AC 3 PHE A 212 ? LYS A 216 ? PHE A 398 LYS A 402
AC 4 TYR A 242 ? ILE A 247 ? TYR A 428 ILE A 433
AC 5 GLY A 155 ? GLY A 161 ? GLY A 341 GLY A 347
AC 6 ASN A 146 ? ARG A 152 ? ASN A 305 ARG A 311
AC 7 THR A 271 ? VAL A 276 ? THR A 457 VAL A 462
AD 1 THR A 126 ? TRP A 130 ? THR A 285 TRP A 289
AD 2 ILE A 138 ? LYS A 143 ? ILE A 297 LYS A 302
AD 3 THR A 277 ? TRP A 285 ? THR A 463 TRP A 471
AD 4 GLN A 290 ? MET A 295 ? GLN A 476 MET A 481
AD 5 ASP A 187 ? ASN A 190 ? ASP A 373 ASN A 376
AD 6 VAL A 224 ? ARG A 227 ? VAL A 410 ARG A 413
AE 1 ILE A 250 ? TRP A 254 ? ILE A 436 TRP A 440
AE 2 GLY A 258 ? TYR A 262 ? GLY A 444 TYR A 448
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA 1 2 N LYS A 40 ? N LYS A 103 O ILE A 56 ? O ILE A 215
AB 1 2 O SER A 101 ? O SER A 260 N LEU A 80 ? N LEU A 239
AB 2 3 N LEU A 81 ? N LEU A 240 O LYS A 311 ? O LYS A 497
AC 1 2 N THR A 111 ? N THR A 270 O ASN A 207 ? O ASN A 393
AC 2 3 N THR A 206 ? N THR A 392 O LEU A 213 ? O LEU A 399
AC 3 4 O TYR A 214 ? O TYR A 400 N HIS A 246 ? N HIS A 432
AC 4 5 N CYS A 245 ? N CYS A 431 O GLY A 155 ? O GLY A 341
AC 5 6 O GLY A 160 ? O GLY A 346 N THR A 148 ? N THR A 307
AC 6 7 O CYS A 151 ? O CYS A 310 N CYS A 272 ? N CYS A 458
AD 1 2 N TYR A 127 ? N TYR A 286 O ASN A 142 ? O ASN A 301
AD 2 3 N ILE A 139 ? N ILE A 298 O ALA A 281 ? O ALA A 467
AD 3 4 N ASP A 284 ? N ASP A 470 O ASN A 292 ? O ASN A 478
AD 4 5 N ILE A 293 ? N ILE A 479 O ASN A 190 ? O ASN A 376
AD 5 6 O ILE A 189 ? O ILE A 375 N GLU A 225 ? N GLU A 411
AE 1 2 N ILE A 251 ? N ILE A 437 O ASN A 260 ? O ASN A 446
#
_pdbx_entry_details.entry_id 2BF1
_pdbx_entry_details.compound_details
;GP120 IS PRODUCED FROM A PRECURSOR PROTEIN, GP160. THE
PRECURSOR ASSEMBLES INTO A TRIMER, WHICH REMAINS INTACT
AFTER CLEAVAGE OF GP160 TO GP120 AND GP41. A THEORETICAL
MODEL OF THE POSITION AND ORIENTATION OF GP120 WITHIN THIS
TRIMERIC ASSEMBLY HAS BEEN GENERATED. THE MODEL LACKS THE
GP41 STRUCTURE, BUT SPACE HAS BEEN LEFT FOR GP41 AT THE
BASE OF THE TRIMER, RESULTING IN GAPS BETWEEN THE GP120
CHAINS OF THE MODEL.
THE TRIMER MODEL CAN BE GENERATED BY APPLYING THE FOLLOWING
TRANSFORMATIONS TO THE COORDINATES OF CHAIN A OF THIS PDB
ENTRY:
TRANS1 1 -0.932060 0.211070 0.294480 1.43530
TRANS2 1 0.071796 -0.689070 0.721130 43.48100
TRANS3 1 0.355130 0.693270 0.627100 -12.91480
TRANS1 2 0.528220 -0.702280 0.477270 36.93710
TRANS2 2 0.771290 0.161790 -0.615570 -22.98340
TRANS3 2 0.355090 0.693270 0.627130 -12.91500
TRANS1 3 0.403860 0.491250 -0.771730 -38.37270
TRANS2 3 -0.843070 0.527350 -0.105510 -20.49850
TRANS3 3 0.355140 0.693230 0.627140 -12.91380
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;IN THE EXPRESSION CONSTRUCT, SHORT LINKERS, GAG HAVE
BEEN SUBSTITUTED FOR THE V1V2 AND V3 LOOPS. THAT IS,
RESIDUES FROM 110 TO 208 WERE REPLACED BY 3 RESIDUES
GAG. RESIDUES FROM 312 TO 341 WERE REPLACED BY THREE
RESIDUES GAG. RESIDUES FROM 220 - 228 AND 500 - 502
ARE DISORDERED AND NOT SEEN IN THE ELECTRON DENSITY
MAPS.
;
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O A LYS 354 ? ? N A GLN 358 ? ? 1.91
2 1 N A ILE 437 ? ? O A ASN 446 ? ? 2.05
3 1 O A GLU 355 ? ? N A THR 359 ? ? 2.09
4 1 O A ASP 244 ? ? O6 K NAG 1 ? ? 2.13
5 1 O A TRP 91 ? ? OH A TYR 448 ? ? 2.18
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 O3 B FUC 4 ? ? 1_555 O3 B FUC 4 ? ? 8_555 0.65
2 1 C3 B FUC 4 ? ? 1_555 O3 B FUC 4 ? ? 8_555 1.92
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CB A ASP 244 ? ? CG A ASP 244 ? ? OD2 A ASP 244 ? ? 123.77 118.30 5.47 0.90 N
2 1 CB A ASP 495 ? ? CG A ASP 495 ? ? OD2 A ASP 495 ? ? 123.80 118.30 5.50 0.90 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 LEU A 67 ? ? -59.31 -156.83
2 1 LEU A 69 ? ? -151.59 83.55
3 1 SER A 74 ? ? -142.37 -142.78
4 1 ASN A 80 ? ? -46.76 150.36
5 1 THR A 81 ? ? -112.62 -93.21
6 1 THR A 83 ? ? -48.63 -80.46
7 1 SER A 97 ? ? -161.98 -11.10
8 1 PRO A 100 ? ? -105.26 -65.99
9 1 CYS A 101 ? ? -161.56 -50.69
10 1 PRO A 106 ? ? -86.18 -146.70
11 1 LEU A 107 ? ? 165.29 54.66
12 1 ILE A 109 ? ? -158.72 0.44
13 1 HIS A 209 ? ? -162.91 -163.98
14 1 GLU A 217 ? ? 174.39 -142.61
15 1 SER A 218 ? ? -97.76 -155.44
16 1 CYS A 232 ? ? -66.53 -79.12
17 1 ALA A 233 ? ? -174.44 -46.46
18 1 PRO A 235 ? ? -62.25 72.65
19 1 CYS A 242 ? ? -65.48 -112.95
20 1 ASN A 243 ? ? 161.40 164.06
21 1 ASP A 244 ? ? 141.76 -86.29
22 1 SER A 248 ? ? -153.72 -67.94
23 1 MET A 251 ? ? 77.19 75.41
24 1 SER A 255 ? ? -135.23 -93.99
25 1 SER A 261 ? ? -144.02 -64.20
26 1 CYS A 262 ? ? -41.61 154.82
27 1 THR A 263 ? ? -151.41 79.74
28 1 MET A 265 ? ? -18.50 -56.98
29 1 THR A 268 ? ? -76.04 -141.80
30 1 SER A 271 ? ? -172.16 148.71
31 1 TRP A 273 ? ? -109.09 -72.36
32 1 PHE A 276 ? ? -77.28 -99.24
33 1 THR A 279 ? ? 74.99 132.16
34 1 ARG A 280 ? ? 23.99 59.27
35 1 ASN A 283 ? ? -30.54 -70.43
36 1 THR A 285 ? ? -40.10 154.43
37 1 TYR A 288 ? ? -20.28 115.18
38 1 ARG A 292 ? ? -157.55 50.47
39 1 ASP A 293 ? ? 54.53 -43.95
40 1 ASN A 294 ? ? -140.59 -53.74
41 1 TYR A 304 ? ? -32.58 161.39
42 1 ASN A 348 ? ? -97.16 41.20
43 1 PRO A 364 ? ? -64.32 87.22
44 1 LYS A 374 ? ? -164.91 70.67
45 1 THR A 378 ? ? -156.59 -95.36
46 1 ALA A 379 ? ? 99.26 29.55
47 1 PRO A 380 ? ? -82.91 -117.98
48 1 ARG A 381 ? ? 138.16 104.88
49 1 PRO A 385 ? ? -93.41 -130.63
50 1 GLU A 386 ? ? 164.48 43.64
51 1 CYS A 394 ? ? -167.87 103.90
52 1 ARG A 395 ? ? 85.78 17.62
53 1 ARG A 413 ? ? -59.19 -78.32
54 1 THR A 439 ? ? 33.88 124.13
55 1 TRP A 440 ? ? -78.94 -79.41
56 1 HIS A 441 ? ? -49.39 -10.10
57 1 VAL A 443 ? ? -61.75 69.73
58 1 PRO A 451 ? ? -102.34 -165.16
59 1 ARG A 452 ? ? 179.17 150.67
60 1 GLU A 453 ? ? -118.07 52.45
61 1 CYS A 458 ? ? -27.49 157.34
62 1 SER A 460 ? ? -172.03 145.38
63 1 THR A 463 ? ? -154.83 -49.85
64 1 SER A 464 ? ? -101.69 79.03
65 1 ASP A 473 ? ? -39.27 119.40
66 1 ALA A 483 ? ? -173.79 76.20
67 1 GLU A 484 ? ? -79.62 -146.92
68 1 LEU A 493 ? ? -67.61 -96.09
#
loop_
_pdbx_validate_chiral.id
_pdbx_validate_chiral.PDB_model_num
_pdbx_validate_chiral.auth_atom_id
_pdbx_validate_chiral.label_alt_id
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_chiral.PDB_ins_code
_pdbx_validate_chiral.details
_pdbx_validate_chiral.omega
1 1 C1 ? B NAG 1 ? 'WRONG HAND' .
2 1 C1 ? B FUC 4 ? 'WRONG HAND' .
3 1 C1 ? C FUC 6 ? 'WRONG HAND' .
4 1 C1 ? D NAG 1 ? 'WRONG HAND' .
5 1 C1 ? D FUC 3 ? 'WRONG HAND' .
6 1 C1 ? E NAG 1 ? 'WRONG HAND' .
7 1 C1 ? E FUC 3 ? 'WRONG HAND' .
8 1 C1 ? F FUC 4 ? 'WRONG HAND' .
9 1 C1 ? G NAG 1 ? PLANAR .
10 1 C1 ? H NAG 1 ? PLANAR .
11 1 C1 ? H FUC 4 ? 'WRONG HAND' .
12 1 C1 ? I NAG 1 ? PLANAR .
13 1 C1 ? K NAG 1 ? PLANAR .
14 1 C1 ? K FUC 6 ? 'WRONG HAND' .
15 1 C1 ? L NAG 1 ? 'WRONG HAND' .
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 7 A ASN 70 ? ASN 'GLYCOSYLATION SITE'
2 A ASN 52 A ASN 211 ? ASN 'GLYCOSYLATION SITE'
3 A ASN 84 A ASN 243 ? ASN 'GLYCOSYLATION SITE'
4 A ASN 87 A ASN 246 ? ASN 'GLYCOSYLATION SITE'
5 A ASN 118 A ASN 277 ? ASN 'GLYCOSYLATION SITE'
6 A ASN 124 A ASN 283 ? ASN 'GLYCOSYLATION SITE'
7 A ASN 135 A ASN 294 ? ASN 'GLYCOSYLATION SITE'
8 A ASN 146 A ASN 305 ? ASN 'GLYCOSYLATION SITE'
9 A ASN 184 A ASN 370 ? ASN 'GLYCOSYLATION SITE'
10 A ASN 190 A ASN 376 ? ASN 'GLYCOSYLATION SITE'
11 A ASN 273 A ASN 459 ? ASN 'GLYCOSYLATION SITE'
12 A ASN 289 A ASN 475 ? ASN 'GLYCOSYLATION SITE'
13 A ASN 292 A ASN 478 ? ASN 'GLYCOSYLATION SITE'
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x -7.8277
_pdbx_refine_tls.origin_y 24.3101
_pdbx_refine_tls.origin_z 7.6839
_pdbx_refine_tls.T[1][1] 0.3099
_pdbx_refine_tls.T[2][2] 0.3770
_pdbx_refine_tls.T[3][3] -0.1065
_pdbx_refine_tls.T[1][2] 0.1841
_pdbx_refine_tls.T[1][3] 0.1642
_pdbx_refine_tls.T[2][3] -0.1204
_pdbx_refine_tls.L[1][1] 2.5980
_pdbx_refine_tls.L[2][2] 4.3451
_pdbx_refine_tls.L[3][3] 3.9816
_pdbx_refine_tls.L[1][2] 0.6658
_pdbx_refine_tls.L[1][3] -0.2382
_pdbx_refine_tls.L[2][3] 1.2659
_pdbx_refine_tls.S[1][1] 0.0795
_pdbx_refine_tls.S[1][2] 0.2841
_pdbx_refine_tls.S[1][3] 0.0143
_pdbx_refine_tls.S[2][1] -0.5748
_pdbx_refine_tls.S[2][2] -0.0061
_pdbx_refine_tls.S[2][3] 0.2420
_pdbx_refine_tls.S[3][1] 0.0411
_pdbx_refine_tls.S[3][2] -0.1310
_pdbx_refine_tls.S[3][3] -0.0735
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 A 64 ? ? A 499 ? ? ? ?
'X-RAY DIFFRACTION' 2 1 A 1500 ? ? A 1549 ? ? ? ?
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A ASP 220 ? A ASP 61
2 1 Y 1 A LYS 221 ? A LYS 62
3 1 Y 1 A HIS 222 ? A HIS 63
4 1 Y 1 A TYR 223 ? A TYR 64
5 1 Y 1 A TRP 224 ? A TRP 65
6 1 Y 1 A ASP 225 ? A ASP 66
7 1 Y 1 A THR 226 ? A THR 67
8 1 Y 1 A ILE 227 ? A ILE 68
9 1 Y 1 A ARG 228 ? A ARG 69
10 1 Y 1 A GLU 500 ? A GLU 314
11 1 Y 1 A ILE 501 ? A ILE 315
12 1 Y 1 A THR 502 ? A THR 316
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BMA C1 C N R 74
BMA C2 C N S 75
BMA C3 C N S 76
BMA C4 C N S 77
BMA C5 C N R 78
BMA C6 C N N 79
BMA O1 O N N 80
BMA O2 O N N 81
BMA O3 O N N 82
BMA O4 O N N 83
BMA O5 O N N 84
BMA O6 O N N 85
BMA H1 H N N 86
BMA H2 H N N 87
BMA H3 H N N 88
BMA H4 H N N 89
BMA H5 H N N 90
BMA H61 H N N 91
BMA H62 H N N 92
BMA HO1 H N N 93
BMA HO2 H N N 94
BMA HO3 H N N 95
BMA HO4 H N N 96
BMA HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
FUC C1 C N R 112
FUC C2 C N S 113
FUC C3 C N R 114
FUC C4 C N S 115
FUC C5 C N S 116
FUC C6 C N N 117
FUC O1 O N N 118
FUC O2 O N N 119
FUC O3 O N N 120
FUC O4 O N N 121
FUC O5 O N N 122
FUC H1 H N N 123
FUC H2 H N N 124
FUC H3 H N N 125
FUC H4 H N N 126
FUC H5 H N N 127
FUC H61 H N N 128
FUC H62 H N N 129
FUC H63 H N N 130
FUC HO1 H N N 131
FUC HO2 H N N 132
FUC HO3 H N N 133
FUC HO4 H N N 134
GLN N N N N 135
GLN CA C N S 136
GLN C C N N 137
GLN O O N N 138
GLN CB C N N 139
GLN CG C N N 140
GLN CD C N N 141
GLN OE1 O N N 142
GLN NE2 N N N 143
GLN OXT O N N 144
GLN H H N N 145
GLN H2 H N N 146
GLN HA H N N 147
GLN HB2 H N N 148
GLN HB3 H N N 149
GLN HG2 H N N 150
GLN HG3 H N N 151
GLN HE21 H N N 152
GLN HE22 H N N 153
GLN HXT H N N 154
GLU N N N N 155
GLU CA C N S 156
GLU C C N N 157
GLU O O N N 158
GLU CB C N N 159
GLU CG C N N 160
GLU CD C N N 161
GLU OE1 O N N 162
GLU OE2 O N N 163
GLU OXT O N N 164
GLU H H N N 165
GLU H2 H N N 166
GLU HA H N N 167
GLU HB2 H N N 168
GLU HB3 H N N 169
GLU HG2 H N N 170
GLU HG3 H N N 171
GLU HE2 H N N 172
GLU HXT H N N 173
GLY N N N N 174
GLY CA C N N 175
GLY C C N N 176
GLY O O N N 177
GLY OXT O N N 178
GLY H H N N 179
GLY H2 H N N 180
GLY HA2 H N N 181
GLY HA3 H N N 182
GLY HXT H N N 183
HIS N N N N 184
HIS CA C N S 185
HIS C C N N 186
HIS O O N N 187
HIS CB C N N 188
HIS CG C Y N 189
HIS ND1 N Y N 190
HIS CD2 C Y N 191
HIS CE1 C Y N 192
HIS NE2 N Y N 193
HIS OXT O N N 194
HIS H H N N 195
HIS H2 H N N 196
HIS HA H N N 197
HIS HB2 H N N 198
HIS HB3 H N N 199
HIS HD1 H N N 200
HIS HD2 H N N 201
HIS HE1 H N N 202
HIS HE2 H N N 203
HIS HXT H N N 204
ILE N N N N 205
ILE CA C N S 206
ILE C C N N 207
ILE O O N N 208
ILE CB C N S 209
ILE CG1 C N N 210
ILE CG2 C N N 211
ILE CD1 C N N 212
ILE OXT O N N 213
ILE H H N N 214
ILE H2 H N N 215
ILE HA H N N 216
ILE HB H N N 217
ILE HG12 H N N 218
ILE HG13 H N N 219
ILE HG21 H N N 220
ILE HG22 H N N 221
ILE HG23 H N N 222
ILE HD11 H N N 223
ILE HD12 H N N 224
ILE HD13 H N N 225
ILE HXT H N N 226
LEU N N N N 227
LEU CA C N S 228
LEU C C N N 229
LEU O O N N 230
LEU CB C N N 231
LEU CG C N N 232
LEU CD1 C N N 233
LEU CD2 C N N 234
LEU OXT O N N 235
LEU H H N N 236
LEU H2 H N N 237
LEU HA H N N 238
LEU HB2 H N N 239
LEU HB3 H N N 240
LEU HG H N N 241
LEU HD11 H N N 242
LEU HD12 H N N 243
LEU HD13 H N N 244
LEU HD21 H N N 245
LEU HD22 H N N 246
LEU HD23 H N N 247
LEU HXT H N N 248
LYS N N N N 249
LYS CA C N S 250
LYS C C N N 251
LYS O O N N 252
LYS CB C N N 253
LYS CG C N N 254
LYS CD C N N 255
LYS CE C N N 256
LYS NZ N N N 257
LYS OXT O N N 258
LYS H H N N 259
LYS H2 H N N 260
LYS HA H N N 261
LYS HB2 H N N 262
LYS HB3 H N N 263
LYS HG2 H N N 264
LYS HG3 H N N 265
LYS HD2 H N N 266
LYS HD3 H N N 267
LYS HE2 H N N 268
LYS HE3 H N N 269
LYS HZ1 H N N 270
LYS HZ2 H N N 271
LYS HZ3 H N N 272
LYS HXT H N N 273
MAN C1 C N S 274
MAN C2 C N S 275
MAN C3 C N S 276
MAN C4 C N S 277
MAN C5 C N R 278
MAN C6 C N N 279
MAN O1 O N N 280
MAN O2 O N N 281
MAN O3 O N N 282
MAN O4 O N N 283
MAN O5 O N N 284
MAN O6 O N N 285
MAN H1 H N N 286
MAN H2 H N N 287
MAN H3 H N N 288
MAN H4 H N N 289
MAN H5 H N N 290
MAN H61 H N N 291
MAN H62 H N N 292
MAN HO1 H N N 293
MAN HO2 H N N 294
MAN HO3 H N N 295
MAN HO4 H N N 296
MAN HO6 H N N 297
MET N N N N 298
MET CA C N S 299
MET C C N N 300
MET O O N N 301
MET CB C N N 302
MET CG C N N 303
MET SD S N N 304
MET CE C N N 305
MET OXT O N N 306
MET H H N N 307
MET H2 H N N 308
MET HA H N N 309
MET HB2 H N N 310
MET HB3 H N N 311
MET HG2 H N N 312
MET HG3 H N N 313
MET HE1 H N N 314
MET HE2 H N N 315
MET HE3 H N N 316
MET HXT H N N 317
NAG C1 C N R 318
NAG C2 C N R 319
NAG C3 C N R 320
NAG C4 C N S 321
NAG C5 C N R 322
NAG C6 C N N 323
NAG C7 C N N 324
NAG C8 C N N 325
NAG N2 N N N 326
NAG O1 O N N 327
NAG O3 O N N 328
NAG O4 O N N 329
NAG O5 O N N 330
NAG O6 O N N 331
NAG O7 O N N 332
NAG H1 H N N 333
NAG H2 H N N 334
NAG H3 H N N 335
NAG H4 H N N 336
NAG H5 H N N 337
NAG H61 H N N 338
NAG H62 H N N 339
NAG H81 H N N 340
NAG H82 H N N 341
NAG H83 H N N 342
NAG HN2 H N N 343
NAG HO1 H N N 344
NAG HO3 H N N 345
NAG HO4 H N N 346
NAG HO6 H N N 347
PHE N N N N 348
PHE CA C N S 349
PHE C C N N 350
PHE O O N N 351
PHE CB C N N 352
PHE CG C Y N 353
PHE CD1 C Y N 354
PHE CD2 C Y N 355
PHE CE1 C Y N 356
PHE CE2 C Y N 357
PHE CZ C Y N 358
PHE OXT O N N 359
PHE H H N N 360
PHE H2 H N N 361
PHE HA H N N 362
PHE HB2 H N N 363
PHE HB3 H N N 364
PHE HD1 H N N 365
PHE HD2 H N N 366
PHE HE1 H N N 367
PHE HE2 H N N 368
PHE HZ H N N 369
PHE HXT H N N 370
PRO N N N N 371
PRO CA C N S 372
PRO C C N N 373
PRO O O N N 374
PRO CB C N N 375
PRO CG C N N 376
PRO CD C N N 377
PRO OXT O N N 378
PRO H H N N 379
PRO HA H N N 380
PRO HB2 H N N 381
PRO HB3 H N N 382
PRO HG2 H N N 383
PRO HG3 H N N 384
PRO HD2 H N N 385
PRO HD3 H N N 386
PRO HXT H N N 387
SER N N N N 388
SER CA C N S 389
SER C C N N 390
SER O O N N 391
SER CB C N N 392
SER OG O N N 393
SER OXT O N N 394
SER H H N N 395
SER H2 H N N 396
SER HA H N N 397
SER HB2 H N N 398
SER HB3 H N N 399
SER HG H N N 400
SER HXT H N N 401
THR N N N N 402
THR CA C N S 403
THR C C N N 404
THR O O N N 405
THR CB C N R 406
THR OG1 O N N 407
THR CG2 C N N 408
THR OXT O N N 409
THR H H N N 410
THR H2 H N N 411
THR HA H N N 412
THR HB H N N 413
THR HG1 H N N 414
THR HG21 H N N 415
THR HG22 H N N 416
THR HG23 H N N 417
THR HXT H N N 418
TRP N N N N 419
TRP CA C N S 420
TRP C C N N 421
TRP O O N N 422
TRP CB C N N 423
TRP CG C Y N 424
TRP CD1 C Y N 425
TRP CD2 C Y N 426
TRP NE1 N Y N 427
TRP CE2 C Y N 428
TRP CE3 C Y N 429
TRP CZ2 C Y N 430
TRP CZ3 C Y N 431
TRP CH2 C Y N 432
TRP OXT O N N 433
TRP H H N N 434
TRP H2 H N N 435
TRP HA H N N 436
TRP HB2 H N N 437
TRP HB3 H N N 438
TRP HD1 H N N 439
TRP HE1 H N N 440
TRP HE3 H N N 441
TRP HZ2 H N N 442
TRP HZ3 H N N 443
TRP HH2 H N N 444
TRP HXT H N N 445
TYR N N N N 446
TYR CA C N S 447
TYR C C N N 448
TYR O O N N 449
TYR CB C N N 450
TYR CG C Y N 451
TYR CD1 C Y N 452
TYR CD2 C Y N 453
TYR CE1 C Y N 454
TYR CE2 C Y N 455
TYR CZ C Y N 456
TYR OH O N N 457
TYR OXT O N N 458
TYR H H N N 459
TYR H2 H N N 460
TYR HA H N N 461
TYR HB2 H N N 462
TYR HB3 H N N 463
TYR HD1 H N N 464
TYR HD2 H N N 465
TYR HE1 H N N 466
TYR HE2 H N N 467
TYR HH H N N 468
TYR HXT H N N 469
VAL N N N N 470
VAL CA C N S 471
VAL C C N N 472
VAL O O N N 473
VAL CB C N N 474
VAL CG1 C N N 475
VAL CG2 C N N 476
VAL OXT O N N 477
VAL H H N N 478
VAL H2 H N N 479
VAL HA H N N 480
VAL HB H N N 481
VAL HG11 H N N 482
VAL HG12 H N N 483
VAL HG13 H N N 484
VAL HG21 H N N 485
VAL HG22 H N N 486
VAL HG23 H N N 487
VAL HXT H N N 488
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BMA C1 C2 sing N N 70
BMA C1 O1 sing N N 71
BMA C1 O5 sing N N 72
BMA C1 H1 sing N N 73
BMA C2 C3 sing N N 74
BMA C2 O2 sing N N 75
BMA C2 H2 sing N N 76
BMA C3 C4 sing N N 77
BMA C3 O3 sing N N 78
BMA C3 H3 sing N N 79
BMA C4 C5 sing N N 80
BMA C4 O4 sing N N 81
BMA C4 H4 sing N N 82
BMA C5 C6 sing N N 83
BMA C5 O5 sing N N 84
BMA C5 H5 sing N N 85
BMA C6 O6 sing N N 86
BMA C6 H61 sing N N 87
BMA C6 H62 sing N N 88
BMA O1 HO1 sing N N 89
BMA O2 HO2 sing N N 90
BMA O3 HO3 sing N N 91
BMA O4 HO4 sing N N 92
BMA O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
FUC C1 C2 sing N N 107
FUC C1 O1 sing N N 108
FUC C1 O5 sing N N 109
FUC C1 H1 sing N N 110
FUC C2 C3 sing N N 111
FUC C2 O2 sing N N 112
FUC C2 H2 sing N N 113
FUC C3 C4 sing N N 114
FUC C3 O3 sing N N 115
FUC C3 H3 sing N N 116
FUC C4 C5 sing N N 117
FUC C4 O4 sing N N 118
FUC C4 H4 sing N N 119
FUC C5 C6 sing N N 120
FUC C5 O5 sing N N 121
FUC C5 H5 sing N N 122
FUC C6 H61 sing N N 123
FUC C6 H62 sing N N 124
FUC C6 H63 sing N N 125
FUC O1 HO1 sing N N 126
FUC O2 HO2 sing N N 127
FUC O3 HO3 sing N N 128
FUC O4 HO4 sing N N 129
GLN N CA sing N N 130
GLN N H sing N N 131
GLN N H2 sing N N 132
GLN CA C sing N N 133
GLN CA CB sing N N 134
GLN CA HA sing N N 135
GLN C O doub N N 136
GLN C OXT sing N N 137
GLN CB CG sing N N 138
GLN CB HB2 sing N N 139
GLN CB HB3 sing N N 140
GLN CG CD sing N N 141
GLN CG HG2 sing N N 142
GLN CG HG3 sing N N 143
GLN CD OE1 doub N N 144
GLN CD NE2 sing N N 145
GLN NE2 HE21 sing N N 146
GLN NE2 HE22 sing N N 147
GLN OXT HXT sing N N 148
GLU N CA sing N N 149
GLU N H sing N N 150
GLU N H2 sing N N 151
GLU CA C sing N N 152
GLU CA CB sing N N 153
GLU CA HA sing N N 154
GLU C O doub N N 155
GLU C OXT sing N N 156
GLU CB CG sing N N 157
GLU CB HB2 sing N N 158
GLU CB HB3 sing N N 159
GLU CG CD sing N N 160
GLU CG HG2 sing N N 161
GLU CG HG3 sing N N 162
GLU CD OE1 doub N N 163
GLU CD OE2 sing N N 164
GLU OE2 HE2 sing N N 165
GLU OXT HXT sing N N 166
GLY N CA sing N N 167
GLY N H sing N N 168
GLY N H2 sing N N 169
GLY CA C sing N N 170
GLY CA HA2 sing N N 171
GLY CA HA3 sing N N 172
GLY C O doub N N 173
GLY C OXT sing N N 174
GLY OXT HXT sing N N 175
HIS N CA sing N N 176
HIS N H sing N N 177
HIS N H2 sing N N 178
HIS CA C sing N N 179
HIS CA CB sing N N 180
HIS CA HA sing N N 181
HIS C O doub N N 182
HIS C OXT sing N N 183
HIS CB CG sing N N 184
HIS CB HB2 sing N N 185
HIS CB HB3 sing N N 186
HIS CG ND1 sing Y N 187
HIS CG CD2 doub Y N 188
HIS ND1 CE1 doub Y N 189
HIS ND1 HD1 sing N N 190
HIS CD2 NE2 sing Y N 191
HIS CD2 HD2 sing N N 192
HIS CE1 NE2 sing Y N 193
HIS CE1 HE1 sing N N 194
HIS NE2 HE2 sing N N 195
HIS OXT HXT sing N N 196
ILE N CA sing N N 197
ILE N H sing N N 198
ILE N H2 sing N N 199
ILE CA C sing N N 200
ILE CA CB sing N N 201
ILE CA HA sing N N 202
ILE C O doub N N 203
ILE C OXT sing N N 204
ILE CB CG1 sing N N 205
ILE CB CG2 sing N N 206
ILE CB HB sing N N 207
ILE CG1 CD1 sing N N 208
ILE CG1 HG12 sing N N 209
ILE CG1 HG13 sing N N 210
ILE CG2 HG21 sing N N 211
ILE CG2 HG22 sing N N 212
ILE CG2 HG23 sing N N 213
ILE CD1 HD11 sing N N 214
ILE CD1 HD12 sing N N 215
ILE CD1 HD13 sing N N 216
ILE OXT HXT sing N N 217
LEU N CA sing N N 218
LEU N H sing N N 219
LEU N H2 sing N N 220
LEU CA C sing N N 221
LEU CA CB sing N N 222
LEU CA HA sing N N 223
LEU C O doub N N 224
LEU C OXT sing N N 225
LEU CB CG sing N N 226
LEU CB HB2 sing N N 227
LEU CB HB3 sing N N 228
LEU CG CD1 sing N N 229
LEU CG CD2 sing N N 230
LEU CG HG sing N N 231
LEU CD1 HD11 sing N N 232
LEU CD1 HD12 sing N N 233
LEU CD1 HD13 sing N N 234
LEU CD2 HD21 sing N N 235
LEU CD2 HD22 sing N N 236
LEU CD2 HD23 sing N N 237
LEU OXT HXT sing N N 238
LYS N CA sing N N 239
LYS N H sing N N 240
LYS N H2 sing N N 241
LYS CA C sing N N 242
LYS CA CB sing N N 243
LYS CA HA sing N N 244
LYS C O doub N N 245
LYS C OXT sing N N 246
LYS CB CG sing N N 247
LYS CB HB2 sing N N 248
LYS CB HB3 sing N N 249
LYS CG CD sing N N 250
LYS CG HG2 sing N N 251
LYS CG HG3 sing N N 252
LYS CD CE sing N N 253
LYS CD HD2 sing N N 254
LYS CD HD3 sing N N 255
LYS CE NZ sing N N 256
LYS CE HE2 sing N N 257
LYS CE HE3 sing N N 258
LYS NZ HZ1 sing N N 259
LYS NZ HZ2 sing N N 260
LYS NZ HZ3 sing N N 261
LYS OXT HXT sing N N 262
MAN C1 C2 sing N N 263
MAN C1 O1 sing N N 264
MAN C1 O5 sing N N 265
MAN C1 H1 sing N N 266
MAN C2 C3 sing N N 267
MAN C2 O2 sing N N 268
MAN C2 H2 sing N N 269
MAN C3 C4 sing N N 270
MAN C3 O3 sing N N 271
MAN C3 H3 sing N N 272
MAN C4 C5 sing N N 273
MAN C4 O4 sing N N 274
MAN C4 H4 sing N N 275
MAN C5 C6 sing N N 276
MAN C5 O5 sing N N 277
MAN C5 H5 sing N N 278
MAN C6 O6 sing N N 279
MAN C6 H61 sing N N 280
MAN C6 H62 sing N N 281
MAN O1 HO1 sing N N 282
MAN O2 HO2 sing N N 283
MAN O3 HO3 sing N N 284
MAN O4 HO4 sing N N 285
MAN O6 HO6 sing N N 286
MET N CA sing N N 287
MET N H sing N N 288
MET N H2 sing N N 289
MET CA C sing N N 290
MET CA CB sing N N 291
MET CA HA sing N N 292
MET C O doub N N 293
MET C OXT sing N N 294
MET CB CG sing N N 295
MET CB HB2 sing N N 296
MET CB HB3 sing N N 297
MET CG SD sing N N 298
MET CG HG2 sing N N 299
MET CG HG3 sing N N 300
MET SD CE sing N N 301
MET CE HE1 sing N N 302
MET CE HE2 sing N N 303
MET CE HE3 sing N N 304
MET OXT HXT sing N N 305
NAG C1 C2 sing N N 306
NAG C1 O1 sing N N 307
NAG C1 O5 sing N N 308
NAG C1 H1 sing N N 309
NAG C2 C3 sing N N 310
NAG C2 N2 sing N N 311
NAG C2 H2 sing N N 312
NAG C3 C4 sing N N 313
NAG C3 O3 sing N N 314
NAG C3 H3 sing N N 315
NAG C4 C5 sing N N 316
NAG C4 O4 sing N N 317
NAG C4 H4 sing N N 318
NAG C5 C6 sing N N 319
NAG C5 O5 sing N N 320
NAG C5 H5 sing N N 321
NAG C6 O6 sing N N 322
NAG C6 H61 sing N N 323
NAG C6 H62 sing N N 324
NAG C7 C8 sing N N 325
NAG C7 N2 sing N N 326
NAG C7 O7 doub N N 327
NAG C8 H81 sing N N 328
NAG C8 H82 sing N N 329
NAG C8 H83 sing N N 330
NAG N2 HN2 sing N N 331
NAG O1 HO1 sing N N 332
NAG O3 HO3 sing N N 333
NAG O4 HO4 sing N N 334
NAG O6 HO6 sing N N 335
PHE N CA sing N N 336
PHE N H sing N N 337
PHE N H2 sing N N 338
PHE CA C sing N N 339
PHE CA CB sing N N 340
PHE CA HA sing N N 341
PHE C O doub N N 342
PHE C OXT sing N N 343
PHE CB CG sing N N 344
PHE CB HB2 sing N N 345
PHE CB HB3 sing N N 346
PHE CG CD1 doub Y N 347
PHE CG CD2 sing Y N 348
PHE CD1 CE1 sing Y N 349
PHE CD1 HD1 sing N N 350
PHE CD2 CE2 doub Y N 351
PHE CD2 HD2 sing N N 352
PHE CE1 CZ doub Y N 353
PHE CE1 HE1 sing N N 354
PHE CE2 CZ sing Y N 355
PHE CE2 HE2 sing N N 356
PHE CZ HZ sing N N 357
PHE OXT HXT sing N N 358
PRO N CA sing N N 359
PRO N CD sing N N 360
PRO N H sing N N 361
PRO CA C sing N N 362
PRO CA CB sing N N 363
PRO CA HA sing N N 364
PRO C O doub N N 365
PRO C OXT sing N N 366
PRO CB CG sing N N 367
PRO CB HB2 sing N N 368
PRO CB HB3 sing N N 369
PRO CG CD sing N N 370
PRO CG HG2 sing N N 371
PRO CG HG3 sing N N 372
PRO CD HD2 sing N N 373
PRO CD HD3 sing N N 374
PRO OXT HXT sing N N 375
SER N CA sing N N 376
SER N H sing N N 377
SER N H2 sing N N 378
SER CA C sing N N 379
SER CA CB sing N N 380
SER CA HA sing N N 381
SER C O doub N N 382
SER C OXT sing N N 383
SER CB OG sing N N 384
SER CB HB2 sing N N 385
SER CB HB3 sing N N 386
SER OG HG sing N N 387
SER OXT HXT sing N N 388
THR N CA sing N N 389
THR N H sing N N 390
THR N H2 sing N N 391
THR CA C sing N N 392
THR CA CB sing N N 393
THR CA HA sing N N 394
THR C O doub N N 395
THR C OXT sing N N 396
THR CB OG1 sing N N 397
THR CB CG2 sing N N 398
THR CB HB sing N N 399
THR OG1 HG1 sing N N 400
THR CG2 HG21 sing N N 401
THR CG2 HG22 sing N N 402
THR CG2 HG23 sing N N 403
THR OXT HXT sing N N 404
TRP N CA sing N N 405
TRP N H sing N N 406
TRP N H2 sing N N 407
TRP CA C sing N N 408
TRP CA CB sing N N 409
TRP CA HA sing N N 410
TRP C O doub N N 411
TRP C OXT sing N N 412
TRP CB CG sing N N 413
TRP CB HB2 sing N N 414
TRP CB HB3 sing N N 415
TRP CG CD1 doub Y N 416
TRP CG CD2 sing Y N 417
TRP CD1 NE1 sing Y N 418
TRP CD1 HD1 sing N N 419
TRP CD2 CE2 doub Y N 420
TRP CD2 CE3 sing Y N 421
TRP NE1 CE2 sing Y N 422
TRP NE1 HE1 sing N N 423
TRP CE2 CZ2 sing Y N 424
TRP CE3 CZ3 doub Y N 425
TRP CE3 HE3 sing N N 426
TRP CZ2 CH2 doub Y N 427
TRP CZ2 HZ2 sing N N 428
TRP CZ3 CH2 sing Y N 429
TRP CZ3 HZ3 sing N N 430
TRP CH2 HH2 sing N N 431
TRP OXT HXT sing N N 432
TYR N CA sing N N 433
TYR N H sing N N 434
TYR N H2 sing N N 435
TYR CA C sing N N 436
TYR CA CB sing N N 437
TYR CA HA sing N N 438
TYR C O doub N N 439
TYR C OXT sing N N 440
TYR CB CG sing N N 441
TYR CB HB2 sing N N 442
TYR CB HB3 sing N N 443
TYR CG CD1 doub Y N 444
TYR CG CD2 sing Y N 445
TYR CD1 CE1 sing Y N 446
TYR CD1 HD1 sing N N 447
TYR CD2 CE2 doub Y N 448
TYR CD2 HD2 sing N N 449
TYR CE1 CZ doub Y N 450
TYR CE1 HE1 sing N N 451
TYR CE2 CZ sing Y N 452
TYR CE2 HE2 sing N N 453
TYR CZ OH sing N N 454
TYR OH HH sing N N 455
TYR OXT HXT sing N N 456
VAL N CA sing N N 457
VAL N H sing N N 458
VAL N H2 sing N N 459
VAL CA C sing N N 460
VAL CA CB sing N N 461
VAL CA HA sing N N 462
VAL C O doub N N 463
VAL C OXT sing N N 464
VAL CB CG1 sing N N 465
VAL CB CG2 sing N N 466
VAL CB HB sing N N 467
VAL CG1 HG11 sing N N 468
VAL CG1 HG12 sing N N 469
VAL CG1 HG13 sing N N 470
VAL CG2 HG21 sing N N 471
VAL CG2 HG22 sing N N 472
VAL CG2 HG23 sing N N 473
VAL OXT HXT sing N N 474
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
2 BMA 3 n
2 FUC 4 n
3 NAG 1 n
3 NAG 2 n
3 BMA 3 n
3 MAN 4 n
3 MAN 5 n
3 FUC 6 n
4 NAG 1 n
4 NAG 2 n
4 FUC 3 n
5 NAG 1 n
5 NAG 2 n
6 NAG 1 n
6 NAG 2 n
6 BMA 3 n
6 MAN 4 n
6 MAN 5 n
6 MAN 6 n
6 MAN 7 n
7 NAG 1 n
7 NAG 2 n
7 BMA 3 n
7 MAN 4 n
7 MAN 5 n
8 NAG 1 n
8 NAG 2 n
8 BMA 3 n
8 MAN 4 n
#
_atom_sites.entry_id 2BF1
_atom_sites.fract_transf_matrix[1][1] 0.009255
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.009255
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.008496
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_