HEADER HYDROLASE 09-DEC-04 2BFN TITLE THE CRYSTAL STRUCTURE OF THE COMPLEX OF THE HALOALKANE DEHALOGENASE TITLE 2 LINB WITH THE PRODUCT OF DEHALOGENATION REACTION 1,2-DICHLOROPROPANE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOGENALKANE DEHALOGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE, 1,4-TCDN COMPND 5 CHLOROHYDROLASE; COMPND 6 EC: 3.8.1.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 STRAIN: UT26 KEYWDS HALOALKANE DEHALOGENASE LINB, 1\, 2\, 3-TRICHLOROPROPANE, HYDROLASE, KEYWDS 2 ALPHA/BETA-HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BANAS,M.OTYEPKA,P.JERABEK,J.VEVODOVA,M.BOHAC,J.DAMBORSKY REVDAT 4 13-DEC-23 2BFN 1 LINK REVDAT 3 24-FEB-09 2BFN 1 VERSN REVDAT 2 18-DEC-07 2BFN 1 JRNL DBREF REVDAT 1 26-JUN-06 2BFN 0 JRNL AUTH M.MININCOVA,Z.PROKOP,J.VEVODOVA,Y.NAGATA,J.DAMBORSKY JRNL TITL WEAK ACTIVITY OF HALOALKANE DEHALOGENASE LINB WITH JRNL TITL 2 1,2,3-TRICHLOROPROPANE REVEALED BY X-RAY CRYSTALLOGRAPHY AND JRNL TITL 3 MICROCALORIMETRY JRNL REF APPL.ENVIRON.MICROBIOL. V. 73 2005 2007 JRNL REFN ISSN 0099-2240 JRNL PMID 17259360 JRNL DOI 10.1128/AEM.02416-06 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.MAREK,J.VEVODOVA,I.KUTA SMATANOVA,Y.NAGATA,L.A.SVENSSON, REMARK 1 AUTH 2 J.NEWMAN,M.TAKAGI,J.DAMBORSKY REMARK 1 TITL CRYSTAL STRUCTURE OF THE HALOALKANE DEHALOGENASE FROM REMARK 1 TITL 2 SPHINGOMONAS PAUCIMOBILIS UT26 REMARK 1 REF BIOCHEMISTRY V. 39 14082 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 11087355 REMARK 1 DOI 10.1021/BI001539C REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2464 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04700 REMARK 3 B22 (A**2) : -0.27300 REMARK 3 B33 (A**2) : 0.31900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2457 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2217 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3339 ; 1.478 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5132 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): 533 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2689 ; 0.254 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1418 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.272 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1290021920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1CV2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.28550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.65550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.07100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.65550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.28550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.07100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 6 CG CD CE NZ REMARK 480 GLU A 10 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 94 O HOH A 2134 0.76 REMARK 500 OE2 GLU A 161 O HOH A 2198 0.90 REMARK 500 OD1 ASP A 166 O HOH A 2207 0.92 REMARK 500 CD GLU A 94 O HOH A 2134 1.08 REMARK 500 CE1 HIS A 121 O HOH A 2157 1.15 REMARK 500 OE2 GLU A 161 O HOH A 2198 1.23 REMARK 500 CD GLU A 161 O HOH A 2198 1.33 REMARK 500 CD GLU A 161 O HOH A 2198 1.34 REMARK 500 OE1 GLU A 161 O HOH A 2198 1.48 REMARK 500 OE2 GLU A 94 O HOH A 2134 1.61 REMARK 500 CG ASP A 166 O HOH A 2207 1.66 REMARK 500 OE1 GLU A 161 O HOH A 2198 1.69 REMARK 500 OE1 GLU A 281 O HOH A 2319 1.91 REMARK 500 NE ARG A 292 O HOH A 2331 1.96 REMARK 500 CD ARG A 292 O HOH A 2331 2.03 REMARK 500 ND1 HIS A 121 O HOH A 2157 2.12 REMARK 500 NH2 ARG A 292 O HOH A 2330 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2086 O HOH A 2130 3645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 50.42 -107.80 REMARK 500 THR A 40 -161.03 -100.89 REMARK 500 ASP A 108 -129.70 53.78 REMARK 500 ARG A 155 35.73 -92.03 REMARK 500 ALA A 247 -74.97 -149.76 REMARK 500 ALA A 271 -94.04 -102.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1299 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 121 NE2 REMARK 620 2 HIS A 121 ND1 57.8 REMARK 620 3 GLN A 165 OE1 130.3 72.7 REMARK 620 4 ASP A 166 OD1 136.0 166.1 93.6 REMARK 620 5 ASP A 166 OD2 108.9 127.6 102.8 52.3 REMARK 620 6 HOH A2157 O 62.7 51.1 89.4 128.7 77.1 REMARK 620 7 HOH A2207 O 116.3 171.7 112.6 20.9 58.6 133.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD1 REMARK 620 2 ASP A 149 OD1 24.6 REMARK 620 3 GLN A 152 OE1 100.0 93.5 REMARK 620 4 HOH A2185 O 87.2 107.0 68.6 REMARK 620 5 HOH A2186 O 115.7 92.6 92.4 153.0 REMARK 620 6 HOH A2273 O 81.5 93.3 166.0 97.7 99.5 REMARK 620 7 HOH A2274 O 151.8 175.4 90.5 72.3 89.6 82.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2019 O REMARK 620 2 HOH A2038 O 143.3 REMARK 620 3 HOH A2039 O 84.9 79.5 REMARK 620 4 HOH A2040 O 64.8 78.9 73.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D2P A1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CV2 RELATED DB: PDB REMARK 900 HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS REMARK 900 PAUCIMOBILIS UT26 AT 1.6 A RESOLUTION REMARK 900 RELATED ID: 1D07 RELATED DB: PDB REMARK 900 HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS REMARK 900 PAUCIMOBILIS UT26 WITH 1,3- PROPANEDIOL, A PRODUCT OF DEBROMIDATION REMARK 900 OF DIBROMPROPANE, AT 2.0A RESOLUTION REMARK 900 RELATED ID: 1G42 RELATED DB: PDB REMARK 900 STRUCTURE OF 1,3,4,6-TETRACHLORO-1,4- CYCLOHEXADIENEHYDROLASE (LINB) REMARK 900 FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXEDWITH 1,2-DICHLOROPROPANE REMARK 900 RELATED ID: 1G4H RELATED DB: PDB REMARK 900 LINB COMPLEXED WITH BUTAN-1-OL REMARK 900 RELATED ID: 1G5F RELATED DB: PDB REMARK 900 STRUCTURE OF LINB COMPLEXED WITH 1,2- DICHLOROETHANE REMARK 900 RELATED ID: 1IZ7 RELATED DB: PDB REMARK 900 RE-REFINEMENT OF THE STRUCTURE OF HYDROLYTIC HALOALKANEDEHALOGENASE REMARK 900 LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 AT1.6 A RESOLUTION REMARK 900 RELATED ID: 1IZ8 RELATED DB: PDB REMARK 900 RE-REFINEMENT OF THE STRUCTURE OF HYDROLYTIC HALOALKANEDEHALOGENASE REMARK 900 LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 WITH1,3-PROPANEDIOL, A REMARK 900 PRODUCT OF DEBROMIDATION OFDIBROMPROPANE, AT 2 .0A RESOLUTION REMARK 900 RELATED ID: 1K5P RELATED DB: PDB REMARK 900 HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM REMARK 900 SPHINGOMONASPAUCIMOBILIS UT26 AT 1.8A RESOLUTION REMARK 900 RELATED ID: 1K63 RELATED DB: PDB REMARK 900 COMPLEX OF HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROMSPHINGOMONAS REMARK 900 PAUCIMOBILIS WITH UT26 2 -BROMO-2-PROPENE-1-OLAT 1.8A RESOLUTION REMARK 900 RELATED ID: 1K6E RELATED DB: PDB REMARK 900 COMPLEX OF HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROMSPHINGOMONAS REMARK 900 PAUCIMOBILIS UT26 WITH 1 ,2-PROPANEDIOL(PRODUCT OF DEHALOGENATION REMARK 900 OF 1,2-DIBROMOPROPANE) AT 1.85A REMARK 900 RELATED ID: 1MJ5 RELATED DB: PDB REMARK 900 LINB (HALOALKANE DEHALOGENASE) FROM SPHINGOMONASPAUCIMOBILIS UT26 REMARK 900 AT ATOMIC RESOLUTION DBREF 2BFN A 1 296 UNP P51698 LINB_PSEPA 1 296 SEQRES 1 A 296 MET SER LEU GLY ALA LYS PRO PHE GLY GLU LYS LYS PHE SEQRES 2 A 296 ILE GLU ILE LYS GLY ARG ARG MET ALA TYR ILE ASP GLU SEQRES 3 A 296 GLY THR GLY ASP PRO ILE LEU PHE GLN HIS GLY ASN PRO SEQRES 4 A 296 THR SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS CYS SEQRES 5 A 296 ALA GLY LEU GLY ARG LEU ILE ALA CYS ASP LEU ILE GLY SEQRES 6 A 296 MET GLY ASP SER ASP LYS LEU ASP PRO SER GLY PRO GLU SEQRES 7 A 296 ARG TYR ALA TYR ALA GLU HIS ARG ASP TYR LEU ASP ALA SEQRES 8 A 296 LEU TRP GLU ALA LEU ASP LEU GLY ASP ARG VAL VAL LEU SEQRES 9 A 296 VAL VAL HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP SEQRES 10 A 296 ALA ARG ARG HIS ARG GLU ARG VAL GLN GLY ILE ALA TYR SEQRES 11 A 296 MET GLU ALA ILE ALA MET PRO ILE GLU TRP ALA ASP PHE SEQRES 12 A 296 PRO GLU GLN ASP ARG ASP LEU PHE GLN ALA PHE ARG SER SEQRES 13 A 296 GLN ALA GLY GLU GLU LEU VAL LEU GLN ASP ASN VAL PHE SEQRES 14 A 296 VAL GLU GLN VAL LEU PRO GLY LEU ILE LEU ARG PRO LEU SEQRES 15 A 296 SER GLU ALA GLU MET ALA ALA TYR ARG GLU PRO PHE LEU SEQRES 16 A 296 ALA ALA GLY GLU ALA ARG ARG PRO THR LEU SER TRP PRO SEQRES 17 A 296 ARG GLN ILE PRO ILE ALA GLY THR PRO ALA ASP VAL VAL SEQRES 18 A 296 ALA ILE ALA ARG ASP TYR ALA GLY TRP LEU SER GLU SER SEQRES 19 A 296 PRO ILE PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA SEQRES 20 A 296 LEU THR THR GLY ARG MET ARG ASP PHE CYS ARG THR TRP SEQRES 21 A 296 PRO ASN GLN THR GLU ILE THR VAL ALA GLY ALA HIS PHE SEQRES 22 A 296 ILE GLN GLU ASP SER PRO ASP GLU ILE GLY ALA ALA ILE SEQRES 23 A 296 ALA ALA PHE VAL ARG ARG LEU ARG PRO ALA HET D2P A1297 6 HET CL A1298 1 HET CA A1299 1 HET CA A1300 1 HET CA A1301 1 HETNAM D2P (2S)-2,3-DICHLOROPROPAN-1-OL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 2 D2P C3 H6 CL2 O FORMUL 3 CL CL 1- FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *337(H2 O) HELIX 1 1 SER A 41 ARG A 46 5 6 HELIX 2 2 ILE A 48 ALA A 53 5 6 HELIX 3 3 ALA A 81 LEU A 96 1 16 HELIX 4 4 ASP A 108 HIS A 121 1 14 HELIX 5 5 GLU A 139 PHE A 143 5 5 HELIX 6 6 PRO A 144 GLN A 146 5 3 HELIX 7 7 ASP A 147 ARG A 155 1 9 HELIX 8 8 ALA A 158 LEU A 164 1 7 HELIX 9 9 ASN A 167 GLN A 172 1 6 HELIX 10 10 GLN A 172 LEU A 177 1 6 HELIX 11 11 SER A 183 GLU A 192 1 10 HELIX 12 12 PRO A 193 LEU A 195 5 3 HELIX 13 13 GLY A 198 ALA A 200 5 3 HELIX 14 14 ARG A 201 ILE A 211 1 11 HELIX 15 15 PRO A 217 SER A 232 1 16 HELIX 16 16 THR A 250 ARG A 258 1 9 HELIX 17 17 PHE A 273 ASP A 277 5 5 HELIX 18 18 SER A 278 ARG A 294 1 17 SHEET 1 AA 8 LYS A 12 ILE A 16 0 SHEET 2 AA 8 ARG A 19 GLU A 26 -1 O ARG A 19 N ILE A 16 SHEET 3 AA 8 ARG A 57 CYS A 61 -1 O LEU A 58 N GLU A 26 SHEET 4 AA 8 PRO A 31 GLN A 35 1 O ILE A 32 N ILE A 59 SHEET 5 AA 8 VAL A 102 HIS A 107 1 O VAL A 103 N LEU A 33 SHEET 6 AA 8 VAL A 125 MET A 131 1 N GLN A 126 O VAL A 102 SHEET 7 AA 8 LYS A 238 PRO A 245 1 O LEU A 239 N TYR A 130 SHEET 8 AA 8 GLN A 263 GLY A 270 1 O THR A 264 N PHE A 240 LINK NE2 HIS A 121 CA CA A1299 3645 1555 1.71 LINK ND1 HIS A 121 CA CA A1299 3645 1555 2.49 LINK OD1BASP A 149 CA CA A1300 1555 1555 2.14 LINK OD1AASP A 149 CA CA A1300 1555 1555 2.38 LINK OE1 GLN A 152 CA CA A1300 1555 1555 2.38 LINK OE1 GLN A 165 CA CA A1299 1555 1555 2.31 LINK OD1 ASP A 166 CA CA A1299 1555 1555 2.41 LINK OD2 ASP A 166 CA CA A1299 1555 1555 2.50 LINK CA CA A1299 O HOH A2157 1555 3645 2.41 LINK CA CA A1299 O HOH A2207 1555 1555 2.59 LINK CA CA A1300 O HOH A2185 1555 1555 2.31 LINK CA CA A1300 O HOH A2186 1555 1555 2.34 LINK CA CA A1300 O HOH A2273 1555 4556 2.26 LINK CA CA A1300 O HOH A2274 1555 4556 2.37 LINK CA CA A1301 O HOH A2019 1555 1555 2.45 LINK CA CA A1301 O HOH A2038 1555 1555 2.43 LINK CA CA A1301 O HOH A2039 1555 1555 2.44 LINK CA CA A1301 O HOH A2040 1555 1555 2.52 CISPEP 1 ASN A 38 PRO A 39 0 -2.31 CISPEP 2 ASP A 73 PRO A 74 0 0.29 CISPEP 3 THR A 216 PRO A 217 0 -4.00 CISPEP 4 GLU A 244 PRO A 245 0 2.16 SITE 1 AC1 7 ASP A 108 PRO A 144 PHE A 151 ALA A 247 SITE 2 AC1 7 HIS A 272 HOH A2152 HOH A2337 SITE 1 AC2 4 ASN A 38 TRP A 109 PRO A 208 HOH A2337 SITE 1 AC3 5 HIS A 121 GLN A 165 ASP A 166 HOH A2157 SITE 2 AC3 5 HOH A2207 SITE 1 AC4 6 ASP A 149 GLN A 152 HOH A2185 HOH A2186 SITE 2 AC4 6 HOH A2273 HOH A2274 SITE 1 AC5 4 HOH A2019 HOH A2038 HOH A2039 HOH A2040 CRYST1 50.571 72.142 73.311 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019774 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013641 0.00000