data_2BFV # _entry.id 2BFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BFV pdb_00002bfv 10.2210/pdb2bfv/pdb WWPDB D_1000177828 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1BFV _pdbx_database_related.details '2BFV IS THE SAME AS THAT OF 1BFV BUT IS IN A DIFFERENT SPACE GROUP AND IS A LOWER RESOLUTION STRUCTURE.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BFV _pdbx_database_status.recvd_initial_deposition_date 1997-05-27 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trinh, C.H.' 1 'Phillips, S.E.V.' 2 # _citation.id primary _citation.title 'Antibody fragment Fv4155 bound to two closely related steroid hormones: the structural basis of fine specificity.' _citation.journal_abbrev Structure _citation.journal_volume 5 _citation.page_first 937 _citation.page_last 948 _citation.year 1997 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9261086 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(97)00247-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trinh, C.H.' 1 ? primary 'Hemmington, S.D.' 2 ? primary 'Verhoeyen, M.E.' 3 ? primary 'Phillips, S.E.' 4 ? # _cell.entry_id 2BFV _cell.length_a 53.600 _cell.length_b 53.600 _cell.length_c 83.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BFV _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man FV4155 12437.998 1 ? ? 'MONOCLONAL ANTIBODY FV FRAGMENT' ? 2 polymer man FV4155 13191.760 1 ? ? 'MONOCLONAL ANTIBODY FV FRAGMENT' ? 3 non-polymer syn 'ESTRIOL 3-(B-D-GLUCURONIDE)' 464.505 1 ? ? ? ? 4 water nat water 18.015 55 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIELTQSPPSLPVSLGDQVSISCRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVAAEDLGLYFCSQSSHVPLTFGSGTKLEIKR ; ;DIELTQSPPSLPVSLGDQVSISCRSSQSLVSNNRRNYLHWYLQKPGQSPKLVIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVAAEDLGLYFCSQSSHVPLTFGSGTKLEIKR ; L ? 2 'polypeptide(L)' no no ;QVQLQESGGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVAAINSDGEPIYYPDTLKGRVTISRDNAKKTLY LQMSSLNFEDTALYYCARLNYAVYGMDYWGQGTTVTVSS ; ;QVQLQESGGGLVNLGGSMTLSCVASGFTFNTYYMSWVRQTPEKTLELVAAINSDGEPIYYPDTLKGRVTISRDNAKKTLY LQMSSLNFEDTALYYCARLNYAVYGMDYWGQGTTVTVSS ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 GLU n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 PRO n 1 10 SER n 1 11 LEU n 1 12 PRO n 1 13 VAL n 1 14 SER n 1 15 LEU n 1 16 GLY n 1 17 ASP n 1 18 GLN n 1 19 VAL n 1 20 SER n 1 21 ILE n 1 22 SER n 1 23 CYS n 1 24 ARG n 1 25 SER n 1 26 SER n 1 27 GLN n 1 28 SER n 1 29 LEU n 1 30 VAL n 1 31 SER n 1 32 ASN n 1 33 ASN n 1 34 ARG n 1 35 ARG n 1 36 ASN n 1 37 TYR n 1 38 LEU n 1 39 HIS n 1 40 TRP n 1 41 TYR n 1 42 LEU n 1 43 GLN n 1 44 LYS n 1 45 PRO n 1 46 GLY n 1 47 GLN n 1 48 SER n 1 49 PRO n 1 50 LYS n 1 51 LEU n 1 52 VAL n 1 53 ILE n 1 54 TYR n 1 55 LYS n 1 56 VAL n 1 57 SER n 1 58 ASN n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 GLY n 1 63 VAL n 1 64 PRO n 1 65 ASP n 1 66 ARG n 1 67 PHE n 1 68 SER n 1 69 GLY n 1 70 SER n 1 71 GLY n 1 72 SER n 1 73 GLY n 1 74 THR n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 LEU n 1 79 LYS n 1 80 ILE n 1 81 SER n 1 82 ARG n 1 83 VAL n 1 84 ALA n 1 85 ALA n 1 86 GLU n 1 87 ASP n 1 88 LEU n 1 89 GLY n 1 90 LEU n 1 91 TYR n 1 92 PHE n 1 93 CYS n 1 94 SER n 1 95 GLN n 1 96 SER n 1 97 SER n 1 98 HIS n 1 99 VAL n 1 100 PRO n 1 101 LEU n 1 102 THR n 1 103 PHE n 1 104 GLY n 1 105 SER n 1 106 GLY n 1 107 THR n 1 108 LYS n 1 109 LEU n 1 110 GLU n 1 111 ILE n 1 112 LYS n 1 113 ARG n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 ASN n 2 14 LEU n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 MET n 2 19 THR n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 VAL n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 ASN n 2 31 THR n 2 32 TYR n 2 33 TYR n 2 34 MET n 2 35 SER n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 THR n 2 41 PRO n 2 42 GLU n 2 43 LYS n 2 44 THR n 2 45 LEU n 2 46 GLU n 2 47 LEU n 2 48 VAL n 2 49 ALA n 2 50 ALA n 2 51 ILE n 2 52 ASN n 2 53 SER n 2 54 ASP n 2 55 GLY n 2 56 GLU n 2 57 PRO n 2 58 ILE n 2 59 TYR n 2 60 TYR n 2 61 PRO n 2 62 ASP n 2 63 THR n 2 64 LEU n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 VAL n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 ARG n 2 73 ASP n 2 74 ASN n 2 75 ALA n 2 76 LYS n 2 77 LYS n 2 78 THR n 2 79 LEU n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 ASN n 2 88 PHE n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 LEU n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ARG n 2 99 LEU n 2 100 ASN n 2 101 TYR n 2 102 ALA n 2 103 VAL n 2 104 TYR n 2 105 GLY n 2 106 MET n 2 107 ASP n 2 108 TYR n 2 109 TRP n 2 110 GLY n 2 111 GLN n 2 112 GLY n 2 113 THR n 2 114 THR n 2 115 VAL n 2 116 THR n 2 117 VAL n 2 118 SER n 2 119 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? JM109 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? JM109 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP KV2G_MOUSE 1 P01631 1 ;DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLNWYLQKAGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKR ; ? 2 PDB 2BFV 2 2BFV ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BFV L 1 ? 113 ? P01631 1 ? 113 ? 1 113 2 2 2BFV H 1 ? 119 ? 2BFV 1 ? 119 ? 1 119 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2BFV ILE L 2 ? UNP P01631 VAL 2 conflict 2 1 1 2BFV GLU L 3 ? UNP P01631 VAL 3 conflict 3 2 1 2BFV LEU L 4 ? UNP P01631 MET 4 conflict 4 3 1 2BFV SER L 7 ? UNP P01631 THR 7 conflict 7 4 1 2BFV PRO L 9 ? UNP P01631 LEU 9 conflict 9 5 1 2BFV VAL L 19 ? UNP P01631 ALA 19 conflict 19 6 1 2BFV SER L 31 ? UNP P01631 HIS 31 conflict 31 7 1 2BFV ASN L 32 ? UNP P01631 SER 32 conflict 32 8 1 2BFV ARG L 34 ? UNP P01631 GLY 34 conflict 34 9 1 2BFV ARG L 35 ? UNP P01631 ASN 35 conflict 35 10 1 2BFV ASN L 36 ? UNP P01631 THR 36 conflict 36 11 1 2BFV HIS L 39 ? UNP P01631 ASN 39 conflict 39 12 1 2BFV PRO L 45 ? UNP P01631 ALA 45 conflict 45 13 1 2BFV VAL L 52 ? UNP P01631 LEU 52 conflict 52 14 1 2BFV ALA L 84 ? UNP P01631 GLU 84 conflict 84 15 1 2BFV LEU L 90 ? UNP P01631 ILE 90 conflict 90 16 1 2BFV SER L 96 ? UNP P01631 THR 96 conflict 96 17 1 2BFV SER L 97 ? UNP P01631 THR 97 conflict 97 18 1 2BFV LEU L 101 ? UNP P01631 PRO 101 conflict 101 19 1 2BFV SER L 105 ? UNP P01631 GLY 105 conflict 105 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 STG non-polymer . 'ESTRIOL 3-(B-D-GLUCURONIDE)' ? 'C24 H32 O9' 464.505 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BFV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_percent_sol 60.8 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED FROM 15% (W/V) PEG 4000, 100MM NA ACETATE AND 50MM TRIS HCL PH 8.5' # _diffrn.id 1 _diffrn.ambient_temp 293.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1995-04 _diffrn_detector.details 'MSC DOUBLE FOCUSING MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2BFV _reflns.observed_criterion_sigma_I 3. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20. _reflns.d_resolution_high 2.5 _reflns.number_obs 7836 _reflns.number_all ? _reflns.percent_possible_obs 86.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 7.21 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.5 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 87.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.225 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 1.5 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2BFV _refine.ls_number_reflns_obs 7740 _refine.ls_number_reflns_all 7740 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 84.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27.44 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;VAL L 56 HAS DIHEDRAL ANGLES WHICH LIE OUTSIDE THEIR EXPECTED RANGE IN THE GAMMA QUADRANT OF THE RAMACHANDRAN PLOT. ; _refine.pdbx_starting_model 'PDB ENTRY 1NBV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1789 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1877 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.011 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.037 0.040 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.037 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord 0.000 0.050 ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 1.199 2.000 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 2.054 2.500 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 5.606 6.000 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 8.050 7.000 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.010 0.020 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.128 0.150 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.184 0.300 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.252 0.300 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.214 0.300 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 4.259 20.000 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 17.559 20.000 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 24.083 20.000 ? ? 'X-RAY DIFFRACTION' ? p_special_tor 0.000 20.000 ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2BFV _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.187 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2BFV _struct.title 'MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BFV _struct_keywords.pdbx_keywords IMMUNOGLOBULIN _struct_keywords.text 'IMMUNOGLOBULIN, FV FRAGMENT, STEROID HORMONE, FINE SPECIFICITY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 85 ? ASP A 87 ? ALA L 85 ASP L 87 5 ? 3 HELX_P HELX_P2 2 PHE B 29 ? THR B 31 ? PHE H 29 THR H 31 5 ? 3 HELX_P HELX_P3 3 PHE B 88 ? ASP B 90 ? PHE H 88 ASP H 90 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 93 SG ? ? L CYS 23 L CYS 93 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.037 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 L PRO 8 A ? PRO 8 L 1 -2.07 2 VAL 99 A . ? VAL 99 L PRO 100 A ? PRO 100 L 1 1.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 4 ? E ? 6 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 4 ? SER A 7 ? LEU L 4 SER L 7 A 2 VAL A 19 ? SER A 25 ? VAL L 19 SER L 25 A 3 ASP A 75 ? ILE A 80 ? ASP L 75 ILE L 80 A 4 PHE A 67 ? SER A 72 ? PHE L 67 SER L 72 B 1 SER A 10 ? VAL A 13 ? SER L 10 VAL L 13 B 2 LYS A 108 ? ILE A 111 ? LYS L 108 ILE L 111 C 1 LEU A 90 ? GLN A 95 ? LEU L 90 GLN L 95 C 2 LEU A 38 ? GLN A 43 ? LEU L 38 GLN L 43 C 3 LYS A 50 ? ILE A 53 ? LYS L 50 ILE L 53 D 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 D 2 MET B 18 ? SER B 25 ? MET H 18 SER H 25 D 3 THR B 78 ? MET B 83 ? THR H 78 MET H 83 D 4 VAL B 68 ? ASP B 73 ? VAL H 68 ASP H 73 E 1 GLY B 10 ? ASN B 13 ? GLY H 10 ASN H 13 E 2 THR B 113 ? SER B 118 ? THR H 113 SER H 118 E 3 ALA B 92 ? LEU B 99 ? ALA H 92 LEU H 99 E 4 TYR B 33 ? GLN B 39 ? TYR H 33 GLN H 39 E 5 LEU B 45 ? ILE B 51 ? LEU H 45 ILE H 51 E 6 PRO B 57 ? TYR B 60 ? PRO H 57 TYR H 60 F 1 ALA B 97 ? ASN B 100 ? ALA H 97 ASN H 100 F 2 GLY B 105 ? TRP B 109 ? GLY H 105 TRP H 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 5 ? O THR L 5 N ARG A 24 ? N ARG L 24 A 2 3 O VAL A 19 ? O VAL L 19 N ILE A 80 ? N ILE L 80 A 3 4 O ASP A 75 ? O ASP L 75 N SER A 72 ? N SER L 72 B 1 2 O LEU A 11 ? O LEU L 11 N LYS A 108 ? N LYS L 108 C 1 2 O LEU A 90 ? O LEU L 90 N GLN A 43 ? N GLN L 43 C 2 3 O TRP A 40 ? O TRP L 40 N ILE A 53 ? N ILE L 53 D 1 2 O GLN B 3 ? O GLN H 3 N SER B 25 ? N SER H 25 D 2 3 O MET B 18 ? O MET H 18 N MET B 83 ? N MET H 83 D 3 4 O THR B 78 ? O THR H 78 N ASP B 73 ? N ASP H 73 E 1 2 O GLY B 10 ? O GLY H 10 N THR B 116 ? N THR H 116 E 2 3 O THR B 113 ? O THR H 113 N TYR B 94 ? N TYR H 94 E 3 4 O LEU B 93 ? O LEU H 93 N GLN B 39 ? N GLN H 39 E 4 5 O MET B 34 ? O MET H 34 N ILE B 51 ? N ILE H 51 E 5 6 O ALA B 50 ? O ALA H 50 N TYR B 59 ? N TYR H 59 F 1 2 O ARG B 98 ? O ARG H 98 N TYR B 108 ? N TYR H 108 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id H _struct_site.pdbx_auth_comp_id STG _struct_site.pdbx_auth_seq_id 200 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE STG H 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 THR B 31 ? THR H 31 . ? 1_555 ? 2 AC1 13 TYR B 32 ? TYR H 32 . ? 1_555 ? 3 AC1 13 TYR B 33 ? TYR H 33 . ? 1_555 ? 4 AC1 13 LEU B 99 ? LEU H 99 . ? 1_555 ? 5 AC1 13 ASN B 100 ? ASN H 100 . ? 1_555 ? 6 AC1 13 TYR B 101 ? TYR H 101 . ? 1_555 ? 7 AC1 13 TYR B 104 ? TYR H 104 . ? 1_555 ? 8 AC1 13 GLY B 105 ? GLY H 105 . ? 1_555 ? 9 AC1 13 HOH E . ? HOH H 207 . ? 1_555 ? 10 AC1 13 HOH E . ? HOH H 210 . ? 1_555 ? 11 AC1 13 VAL A 99 ? VAL L 99 . ? 1_555 ? 12 AC1 13 PRO A 100 ? PRO L 100 . ? 1_555 ? 13 AC1 13 LEU A 101 ? LEU L 101 . ? 1_555 ? # _database_PDB_matrix.entry_id 2BFV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BFV _atom_sites.fract_transf_matrix[1][1] 0.018657 _atom_sites.fract_transf_matrix[1][2] 0.010771 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021543 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011933 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP L . n A 1 2 ILE 2 2 2 ILE ILE L . n A 1 3 GLU 3 3 3 GLU GLU L . n A 1 4 LEU 4 4 4 LEU LEU L . n A 1 5 THR 5 5 5 THR THR L . n A 1 6 GLN 6 6 6 GLN GLN L . n A 1 7 SER 7 7 7 SER SER L . n A 1 8 PRO 8 8 8 PRO PRO L . n A 1 9 PRO 9 9 9 PRO PRO L . n A 1 10 SER 10 10 10 SER SER L . n A 1 11 LEU 11 11 11 LEU LEU L . n A 1 12 PRO 12 12 12 PRO PRO L . n A 1 13 VAL 13 13 13 VAL VAL L . n A 1 14 SER 14 14 14 SER SER L . n A 1 15 LEU 15 15 15 LEU LEU L . n A 1 16 GLY 16 16 16 GLY GLY L . n A 1 17 ASP 17 17 17 ASP ASP L . n A 1 18 GLN 18 18 18 GLN GLN L . n A 1 19 VAL 19 19 19 VAL VAL L . n A 1 20 SER 20 20 20 SER SER L . n A 1 21 ILE 21 21 21 ILE ILE L . n A 1 22 SER 22 22 22 SER SER L . n A 1 23 CYS 23 23 23 CYS CYS L . n A 1 24 ARG 24 24 24 ARG ARG L . n A 1 25 SER 25 25 25 SER SER L . n A 1 26 SER 26 26 26 SER SER L . n A 1 27 GLN 27 27 27 GLN GLN L . n A 1 28 SER 28 28 28 SER SER L . n A 1 29 LEU 29 29 29 LEU LEU L . n A 1 30 VAL 30 30 30 VAL VAL L . n A 1 31 SER 31 31 31 SER SER L . n A 1 32 ASN 32 32 32 ASN ASN L . n A 1 33 ASN 33 33 33 ASN ASN L . n A 1 34 ARG 34 34 34 ARG ARG L . n A 1 35 ARG 35 35 35 ARG ARG L . n A 1 36 ASN 36 36 36 ASN ASN L . n A 1 37 TYR 37 37 37 TYR TYR L . n A 1 38 LEU 38 38 38 LEU LEU L . n A 1 39 HIS 39 39 39 HIS HIS L . n A 1 40 TRP 40 40 40 TRP TRP L . n A 1 41 TYR 41 41 41 TYR TYR L . n A 1 42 LEU 42 42 42 LEU LEU L . n A 1 43 GLN 43 43 43 GLN GLN L . n A 1 44 LYS 44 44 44 LYS LYS L . n A 1 45 PRO 45 45 45 PRO PRO L . n A 1 46 GLY 46 46 46 GLY GLY L . n A 1 47 GLN 47 47 47 GLN GLN L . n A 1 48 SER 48 48 48 SER SER L . n A 1 49 PRO 49 49 49 PRO PRO L . n A 1 50 LYS 50 50 50 LYS LYS L . n A 1 51 LEU 51 51 51 LEU LEU L . n A 1 52 VAL 52 52 52 VAL VAL L . n A 1 53 ILE 53 53 53 ILE ILE L . n A 1 54 TYR 54 54 54 TYR TYR L . n A 1 55 LYS 55 55 55 LYS LYS L . n A 1 56 VAL 56 56 56 VAL VAL L . n A 1 57 SER 57 57 57 SER SER L . n A 1 58 ASN 58 58 58 ASN ASN L . n A 1 59 ARG 59 59 59 ARG ARG L . n A 1 60 PHE 60 60 60 PHE PHE L . n A 1 61 SER 61 61 61 SER SER L . n A 1 62 GLY 62 62 62 GLY GLY L . n A 1 63 VAL 63 63 63 VAL VAL L . n A 1 64 PRO 64 64 64 PRO PRO L . n A 1 65 ASP 65 65 65 ASP ASP L . n A 1 66 ARG 66 66 66 ARG ARG L . n A 1 67 PHE 67 67 67 PHE PHE L . n A 1 68 SER 68 68 68 SER SER L . n A 1 69 GLY 69 69 69 GLY GLY L . n A 1 70 SER 70 70 70 SER SER L . n A 1 71 GLY 71 71 71 GLY GLY L . n A 1 72 SER 72 72 72 SER SER L . n A 1 73 GLY 73 73 73 GLY GLY L . n A 1 74 THR 74 74 74 THR THR L . n A 1 75 ASP 75 75 75 ASP ASP L . n A 1 76 PHE 76 76 76 PHE PHE L . n A 1 77 THR 77 77 77 THR THR L . n A 1 78 LEU 78 78 78 LEU LEU L . n A 1 79 LYS 79 79 79 LYS LYS L . n A 1 80 ILE 80 80 80 ILE ILE L . n A 1 81 SER 81 81 81 SER SER L . n A 1 82 ARG 82 82 82 ARG ARG L . n A 1 83 VAL 83 83 83 VAL VAL L . n A 1 84 ALA 84 84 84 ALA ALA L . n A 1 85 ALA 85 85 85 ALA ALA L . n A 1 86 GLU 86 86 86 GLU GLU L . n A 1 87 ASP 87 87 87 ASP ASP L . n A 1 88 LEU 88 88 88 LEU LEU L . n A 1 89 GLY 89 89 89 GLY GLY L . n A 1 90 LEU 90 90 90 LEU LEU L . n A 1 91 TYR 91 91 91 TYR TYR L . n A 1 92 PHE 92 92 92 PHE PHE L . n A 1 93 CYS 93 93 93 CYS CYS L . n A 1 94 SER 94 94 94 SER SER L . n A 1 95 GLN 95 95 95 GLN GLN L . n A 1 96 SER 96 96 96 SER SER L . n A 1 97 SER 97 97 97 SER SER L . n A 1 98 HIS 98 98 98 HIS HIS L . n A 1 99 VAL 99 99 99 VAL VAL L . n A 1 100 PRO 100 100 100 PRO PRO L . n A 1 101 LEU 101 101 101 LEU LEU L . n A 1 102 THR 102 102 102 THR THR L . n A 1 103 PHE 103 103 103 PHE PHE L . n A 1 104 GLY 104 104 104 GLY GLY L . n A 1 105 SER 105 105 105 SER SER L . n A 1 106 GLY 106 106 106 GLY GLY L . n A 1 107 THR 107 107 107 THR THR L . n A 1 108 LYS 108 108 108 LYS LYS L . n A 1 109 LEU 109 109 109 LEU LEU L . n A 1 110 GLU 110 110 110 GLU GLU L . n A 1 111 ILE 111 111 111 ILE ILE L . n A 1 112 LYS 112 112 112 LYS LYS L . n A 1 113 ARG 113 113 ? ? ? L . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 GLN 5 5 5 GLN GLN H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 GLY 9 9 9 GLY GLY H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 ASN 13 13 13 ASN ASN H . n B 2 14 LEU 14 14 14 LEU LEU H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 GLY 16 16 16 GLY GLY H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 MET 18 18 18 MET MET H . n B 2 19 THR 19 19 19 THR THR H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 VAL 23 23 23 VAL VAL H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 ASN 30 30 30 ASN ASN H . n B 2 31 THR 31 31 31 THR THR H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 TYR 33 33 33 TYR TYR H . n B 2 34 MET 34 34 34 MET MET H . n B 2 35 SER 35 35 35 SER SER H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 THR 40 40 40 THR THR H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLU 42 42 42 GLU GLU H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 THR 44 44 44 THR THR H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 LEU 47 47 47 LEU LEU H . n B 2 48 VAL 48 48 48 VAL VAL H . n B 2 49 ALA 49 49 49 ALA ALA H . n B 2 50 ALA 50 50 50 ALA ALA H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 ASN 52 52 52 ASN ASN H . n B 2 53 SER 53 53 53 SER SER H . n B 2 54 ASP 54 54 54 ASP ASP H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 GLU 56 56 56 GLU GLU H . n B 2 57 PRO 57 57 57 PRO PRO H . n B 2 58 ILE 58 58 58 ILE ILE H . n B 2 59 TYR 59 59 59 TYR TYR H . n B 2 60 TYR 60 60 60 TYR TYR H . n B 2 61 PRO 61 61 61 PRO PRO H . n B 2 62 ASP 62 62 62 ASP ASP H . n B 2 63 THR 63 63 63 THR THR H . n B 2 64 LEU 64 64 64 LEU LEU H . n B 2 65 LYS 65 65 65 LYS LYS H . n B 2 66 GLY 66 66 66 GLY GLY H . n B 2 67 ARG 67 67 67 ARG ARG H . n B 2 68 VAL 68 68 68 VAL VAL H . n B 2 69 THR 69 69 69 THR THR H . n B 2 70 ILE 70 70 70 ILE ILE H . n B 2 71 SER 71 71 71 SER SER H . n B 2 72 ARG 72 72 72 ARG ARG H . n B 2 73 ASP 73 73 73 ASP ASP H . n B 2 74 ASN 74 74 74 ASN ASN H . n B 2 75 ALA 75 75 75 ALA ALA H . n B 2 76 LYS 76 76 76 LYS LYS H . n B 2 77 LYS 77 77 77 LYS LYS H . n B 2 78 THR 78 78 78 THR THR H . n B 2 79 LEU 79 79 79 LEU LEU H . n B 2 80 TYR 80 80 80 TYR TYR H . n B 2 81 LEU 81 81 81 LEU LEU H . n B 2 82 GLN 82 82 82 GLN GLN H . n B 2 83 MET 83 83 83 MET MET H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 SER 85 85 85 SER SER H . n B 2 86 LEU 86 86 86 LEU LEU H . n B 2 87 ASN 87 87 87 ASN ASN H . n B 2 88 PHE 88 88 88 PHE PHE H . n B 2 89 GLU 89 89 89 GLU GLU H . n B 2 90 ASP 90 90 90 ASP ASP H . n B 2 91 THR 91 91 91 THR THR H . n B 2 92 ALA 92 92 92 ALA ALA H . n B 2 93 LEU 93 93 93 LEU LEU H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 CYS 96 96 96 CYS CYS H . n B 2 97 ALA 97 97 97 ALA ALA H . n B 2 98 ARG 98 98 98 ARG ARG H . n B 2 99 LEU 99 99 99 LEU LEU H . n B 2 100 ASN 100 100 100 ASN ASN H . n B 2 101 TYR 101 101 101 TYR TYR H . n B 2 102 ALA 102 102 102 ALA ALA H . n B 2 103 VAL 103 103 103 VAL VAL H . n B 2 104 TYR 104 104 104 TYR TYR H . n B 2 105 GLY 105 105 105 GLY GLY H . n B 2 106 MET 106 106 106 MET MET H . n B 2 107 ASP 107 107 107 ASP ASP H . n B 2 108 TYR 108 108 108 TYR TYR H . n B 2 109 TRP 109 109 109 TRP TRP H . n B 2 110 GLY 110 110 110 GLY GLY H . n B 2 111 GLN 111 111 111 GLN GLN H . n B 2 112 GLY 112 112 112 GLY GLY H . n B 2 113 THR 113 113 113 THR THR H . n B 2 114 THR 114 114 114 THR THR H . n B 2 115 VAL 115 115 115 VAL VAL H . n B 2 116 THR 116 116 116 THR THR H . n B 2 117 VAL 117 117 117 VAL VAL H . n B 2 118 SER 118 118 118 SER SER H . n B 2 119 SER 119 119 119 SER SER H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 STG 1 200 200 STG STG H . D 4 HOH 1 114 200 HOH HOH L . D 4 HOH 2 115 201 HOH HOH L . D 4 HOH 3 116 202 HOH HOH L . D 4 HOH 4 117 203 HOH HOH L . D 4 HOH 5 118 204 HOH HOH L . D 4 HOH 6 119 205 HOH HOH L . D 4 HOH 7 120 206 HOH HOH L . D 4 HOH 8 121 207 HOH HOH L . D 4 HOH 9 122 208 HOH HOH L . D 4 HOH 10 123 209 HOH HOH L . D 4 HOH 11 124 210 HOH HOH L . D 4 HOH 12 125 211 HOH HOH L . D 4 HOH 13 126 212 HOH HOH L . D 4 HOH 14 127 213 HOH HOH L . D 4 HOH 15 128 214 HOH HOH L . D 4 HOH 16 129 215 HOH HOH L . D 4 HOH 17 130 216 HOH HOH L . D 4 HOH 18 131 217 HOH HOH L . D 4 HOH 19 132 218 HOH HOH L . D 4 HOH 20 133 219 HOH HOH L . D 4 HOH 21 134 220 HOH HOH L . D 4 HOH 22 135 221 HOH HOH L . D 4 HOH 23 136 222 HOH HOH L . D 4 HOH 24 137 223 HOH HOH L . D 4 HOH 25 138 224 HOH HOH L . D 4 HOH 26 139 225 HOH HOH L . D 4 HOH 27 140 226 HOH HOH L . E 4 HOH 1 201 300 HOH HOH H . E 4 HOH 2 202 301 HOH HOH H . E 4 HOH 3 203 302 HOH HOH H . E 4 HOH 4 204 303 HOH HOH H . E 4 HOH 5 205 304 HOH HOH H . E 4 HOH 6 206 305 HOH HOH H . E 4 HOH 7 207 306 HOH HOH H . E 4 HOH 8 208 307 HOH HOH H . E 4 HOH 9 209 308 HOH HOH H . E 4 HOH 10 210 309 HOH HOH H . E 4 HOH 11 211 310 HOH HOH H . E 4 HOH 12 212 311 HOH HOH H . E 4 HOH 13 213 312 HOH HOH H . E 4 HOH 14 214 313 HOH HOH H . E 4 HOH 15 215 314 HOH HOH H . E 4 HOH 16 216 315 HOH HOH H . E 4 HOH 17 217 316 HOH HOH H . E 4 HOH 18 218 317 HOH HOH H . E 4 HOH 19 219 318 HOH HOH H . E 4 HOH 20 220 319 HOH HOH H . E 4 HOH 21 221 320 HOH HOH H . E 4 HOH 22 222 321 HOH HOH H . E 4 HOH 23 223 322 HOH HOH H . E 4 HOH 24 224 323 HOH HOH H . E 4 HOH 25 225 324 HOH HOH H . E 4 HOH 26 226 325 HOH HOH H . E 4 HOH 27 227 326 HOH HOH H . E 4 HOH 28 228 327 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2520 ? 1 MORE -22 ? 1 'SSA (A^2)' 10370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-03 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 ROTAVATA 'data reduction' . ? 2 AMoRE phasing . ? 3 PROLSQ refinement . ? 4 CCP4 'data scaling' '(ROTAVATA)' ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 L _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 32 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 140 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE L ARG 34 ? ? CZ L ARG 34 ? ? NH1 L ARG 34 ? ? 125.77 120.30 5.47 0.50 N 2 1 NE L ARG 59 ? ? CZ L ARG 59 ? ? NH2 L ARG 59 ? ? 123.97 120.30 3.67 0.50 N 3 1 CG H MET 34 ? ? SD H MET 34 ? ? CE H MET 34 ? ? 109.82 100.20 9.62 1.60 N 4 1 NE H ARG 38 ? ? CZ H ARG 38 ? ? NH1 H ARG 38 ? ? 123.67 120.30 3.37 0.50 N 5 1 NE H ARG 72 ? ? CZ H ARG 72 ? ? NH1 H ARG 72 ? ? 123.97 120.30 3.67 0.50 N 6 1 CB H ASP 73 ? ? CG H ASP 73 ? ? OD2 H ASP 73 ? ? 125.29 118.30 6.99 0.90 N 7 1 CB H GLU 89 ? ? CG H GLU 89 ? ? CD H GLU 89 ? ? 130.65 114.20 16.45 2.70 N 8 1 N H CYS 96 ? ? CA H CYS 96 ? ? CB H CYS 96 ? ? 120.06 110.80 9.26 1.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN L 32 ? ? -126.54 -161.49 2 1 ASN L 36 ? ? 45.76 75.07 3 1 TYR L 37 ? ? -98.87 59.46 4 1 VAL L 52 ? ? -98.46 -70.39 5 1 VAL L 56 ? ? 66.36 -54.73 6 1 THR H 28 ? ? -69.90 95.19 7 1 LYS H 43 ? ? 86.43 11.65 8 1 TYR H 59 ? ? -173.39 139.77 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG L 24 ? ? 0.161 'SIDE CHAIN' 2 1 ARG L 66 ? ? 0.156 'SIDE CHAIN' 3 1 ARG H 38 ? ? 0.107 'SIDE CHAIN' 4 1 ARG H 67 ? ? 0.089 'SIDE CHAIN' # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id L _pdbx_unobs_or_zero_occ_residues.auth_comp_id ARG _pdbx_unobs_or_zero_occ_residues.auth_seq_id 113 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ARG _pdbx_unobs_or_zero_occ_residues.label_seq_id 113 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ESTRIOL 3-(B-D-GLUCURONIDE)' STG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NBV _pdbx_initial_refinement_model.details 'PDB ENTRY 1NBV' #