HEADER HYDROLASE 08-JAN-05 2BHB TITLE ZN SUBSTITUTED E. COLI AMINOPEPTIDASE P COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOPEPTIDASE P, X-PRO AMINOPEPTIDASE, APP-II, COMPND 5 AMINOPEPTIDASE P II, AMINOACYLPROLINE AMINOPEPTIDASE; COMPND 6 EC: 3.4.11.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: AN1459; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AN1459; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPL670 KEYWDS HYDROLASE, PROLINE-SPECIFIC PEPTIDASE, METALLOENZYME, PITA-BREAD KEYWDS 2 FOLD, DINUCLEAR HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.GRAHAM,C.S.BOND,H.C.FREEMAN,J.M.GUSS REVDAT 9 13-DEC-23 2BHB 1 REMARK LINK REVDAT 8 15-MAY-19 2BHB 1 REMARK REVDAT 7 08-MAY-19 2BHB 1 REMARK REVDAT 6 20-JUN-18 2BHB 1 JRNL REVDAT 5 28-SEP-11 2BHB 1 REMARK FORMUL LINK SITE REVDAT 5 2 1 HETATM REVDAT 4 13-JUL-11 2BHB 1 VERSN REVDAT 3 24-FEB-09 2BHB 1 VERSN REVDAT 2 26-OCT-05 2BHB 1 JRNL REVDAT 1 29-SEP-05 2BHB 0 JRNL AUTH S.C.GRAHAM,C.S.BOND,H.C.FREEMAN,J.M.GUSS JRNL TITL STRUCTURAL AND FUNCTIONAL IMPLICATIONS OF METAL ION JRNL TITL 2 SELECTION IN AMINOPEPTIDASE P, A METALLOPROTEASE WITH A JRNL TITL 3 DINUCLEAR METAL CENTER. JRNL REF BIOCHEMISTRY V. 44 13820 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16229471 JRNL DOI 10.1021/BI0512849 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2126 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 55.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3605 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3286 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4891 ; 1.113 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7575 ; 0.750 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 5.942 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;37.237 ;23.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 610 ;12.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;15.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4048 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 760 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 693 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3264 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1713 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2131 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 185 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.085 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 70 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2379 ; 1.162 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3524 ; 1.611 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1540 ; 2.950 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 4.663 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1068 71.5918 69.3220 REMARK 3 T TENSOR REMARK 3 T11: -0.0084 T22: 0.0150 REMARK 3 T33: -0.0523 T12: -0.1103 REMARK 3 T13: 0.0115 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 1.1164 L22: 2.1549 REMARK 3 L33: 0.9969 L12: -0.3578 REMARK 3 L13: -0.2574 L23: -0.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.3067 S13: 0.0339 REMARK 3 S21: 0.3475 S22: 0.0205 S23: 0.0057 REMARK 3 S31: -0.0645 S32: 0.0713 S33: -0.0714 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7708 53.4024 40.8709 REMARK 3 T TENSOR REMARK 3 T11: -0.1122 T22: -0.0540 REMARK 3 T33: -0.1460 T12: -0.0516 REMARK 3 T13: 0.0210 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.7957 L22: 1.7392 REMARK 3 L33: 1.4046 L12: -0.0461 REMARK 3 L13: -0.0517 L23: 0.5601 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0290 S13: 0.1340 REMARK 3 S21: -0.2094 S22: 0.0447 S23: -0.1554 REMARK 3 S31: -0.0264 S32: 0.1762 S33: -0.0733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. SUFFICIENT DENSITY WAS NOT PRESENT FOR COMPLETE REMARK 3 MODELLING OF RESIDUES A439 OR A440 REMARK 4 REMARK 4 2BHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1290022319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43879 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1N51 STRIPPED OF MULTIPLE CONFORMERS, REMARK 200 SOLVENT ATOMS AND HETERO COMPOUNDS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMINOPEPTIDASE P WAS DIALYSED AGAINST REMARK 280 EGTA PRIOR TO CRYSTALLISATION. CRYSTALS WERE GROWN IN 26% MPD, REMARK 280 100 MM NACITRATE (PH 7.0) AND 200 MM MGACETATE AT 4C BY HANGING REMARK 280 DROP VAPOUR DIFFUSION. CRYSTALS WERE SOAKED FOR 2 HOURS IN REMARK 280 RESERVOIR SOLUTION SUPPLEMENTED WITH 1 MM ZNCL2 PRIOR TO DATA REMARK 280 COLLECTION., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.40700 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.45700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.72850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.40700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.18550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 173.18550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.40700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.72850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.40700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.45700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.40700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 115.45700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.40700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 173.18550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 57.72850 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.40700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.72850 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 173.18550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.40700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.40700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 115.45700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 69.40700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 69.40700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.45700 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -69.40700 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 69.40700 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 115.45700 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 138.81400 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2043 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2047 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 GLN A 440 C O CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 -120.97 50.43 REMARK 500 THR A 53 -35.58 -133.79 REMARK 500 HIS A 243 51.00 -113.30 REMARK 500 ASP A 271 93.22 -161.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1006 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD2 REMARK 620 2 HIS A 170 NE2 99.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 ASP A 260 OD2 54.9 REMARK 620 3 ASP A 271 OD1 93.7 147.0 REMARK 620 4 GLU A 406 OE1 108.0 101.8 97.4 REMARK 620 5 HOH A2209 O 134.4 88.1 112.6 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 HIS A 354 NE2 90.7 REMARK 620 3 GLU A 383 OE2 158.1 84.8 REMARK 620 4 GLU A 406 OE2 85.8 135.5 82.5 REMARK 620 5 HOH A2209 O 96.1 123.6 104.2 100.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2211 O REMARK 620 2 HOH A2212 O 178.5 REMARK 620 3 HOH A2213 O 89.0 90.6 REMARK 620 4 HOH A2214 O 89.2 89.4 91.9 REMARK 620 5 HOH A2215 O 91.8 89.6 90.2 177.7 REMARK 620 6 HOH A2216 O 90.9 89.5 178.0 90.1 87.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1009 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A16 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU REMARK 900 RELATED ID: 1JAW RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM E. COLI LOW PH FORM REMARK 900 RELATED ID: 1M35 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1N51 RELATED DB: PDB REMARK 900 AMINOPEPTIDASE P IN COMPLEX WITH THE INHIBITOR APSTATIN REMARK 900 RELATED ID: 1W2M RELATED DB: PDB REMARK 900 CA-SUBSTITUTED FORM OF E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 1W7V RELATED DB: PDB REMARK 900 ZNMG SUBSTRITUTED AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 1WBQ RELATED DB: PDB REMARK 900 ZNMG SUBSTITUTED AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 1WL6 RELATED DB: PDB REMARK 900 MG-SUBSTITUTED FORM OF E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 1WL9 RELATED DB: PDB REMARK 900 STRUCTURE OF AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 1WLR RELATED DB: PDB REMARK 900 APO AMINOPEPTIDASE P FROM E. COLI REMARK 900 RELATED ID: 2BH3 RELATED DB: PDB REMARK 900 ZN SUBSTITUTED E. COLI AMINOPEPTIDASE P IN COMPLEX WITH PRODUCT REMARK 900 RELATED ID: 2BHA RELATED DB: PDB REMARK 900 E. COLI AMINOPEPTIDASE P IN COMPLEX WITH SUBSTRATE REMARK 900 RELATED ID: 2BHC RELATED DB: PDB REMARK 900 NA SUBSTITUTED E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BHD RELATED DB: PDB REMARK 900 MG SUBSTITUTED E. COLI AMINOPEPTIDASE P IN COMPLEX WITH A PRODUCT- REMARK 900 LIKE INHIBITOR REMARK 900 RELATED ID: 2BN7 RELATED DB: PDB REMARK 900 MN SUBSTITUTED E. COLI AMINOPEPTIDASE P IN COMPLEX WITH PRODUCT AND REMARK 900 ZN REMARK 900 RELATED ID: 2BWS RELATED DB: PDB REMARK 900 HIS243ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWT RELATED DB: PDB REMARK 900 ASP260ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWU RELATED DB: PDB REMARK 900 ASP271ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWV RELATED DB: PDB REMARK 900 HIS361ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWW RELATED DB: PDB REMARK 900 HIS350ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWX RELATED DB: PDB REMARK 900 HIS354ALA E. COLI AMINOPEPTIDASE P REMARK 900 RELATED ID: 2BWY RELATED DB: PDB REMARK 900 GLU383ALA E. COLI AMINOPEPTIDASE P DBREF 2BHB A 1 440 UNP P15034 AMPP_ECOLI 1 440 SEQRES 1 A 440 SER GLU ILE SER ARG GLN GLU PHE GLN ARG ARG ARG GLN SEQRES 2 A 440 ALA LEU VAL GLU GLN MET GLN PRO GLY SER ALA ALA LEU SEQRES 3 A 440 ILE PHE ALA ALA PRO GLU VAL THR ARG SER ALA ASP SER SEQRES 4 A 440 GLU TYR PRO TYR ARG GLN ASN SER ASP PHE TRP TYR PHE SEQRES 5 A 440 THR GLY PHE ASN GLU PRO GLU ALA VAL LEU VAL LEU ILE SEQRES 6 A 440 LYS SER ASP ASP THR HIS ASN HIS SER VAL LEU PHE ASN SEQRES 7 A 440 ARG VAL ARG ASP LEU THR ALA GLU ILE TRP PHE GLY ARG SEQRES 8 A 440 ARG LEU GLY GLN ASP ALA ALA PRO GLU LYS LEU GLY VAL SEQRES 9 A 440 ASP ARG ALA LEU ALA PHE SER GLU ILE ASN GLN GLN LEU SEQRES 10 A 440 TYR GLN LEU LEU ASN GLY LEU ASP VAL VAL TYR HIS ALA SEQRES 11 A 440 GLN GLY GLU TYR ALA TYR ALA ASP VAL ILE VAL ASN SER SEQRES 12 A 440 ALA LEU GLU LYS LEU ARG LYS GLY SER ARG GLN ASN LEU SEQRES 13 A 440 THR ALA PRO ALA THR MET ILE ASP TRP ARG PRO VAL VAL SEQRES 14 A 440 HIS GLU MET ARG LEU PHE LYS SER PRO GLU GLU ILE ALA SEQRES 15 A 440 VAL LEU ARG ARG ALA GLY GLU ILE THR ALA MET ALA HIS SEQRES 16 A 440 THR ARG ALA MET GLU LYS CYS ARG PRO GLY MET PHE GLU SEQRES 17 A 440 TYR HIS LEU GLU GLY GLU ILE HIS HIS GLU PHE ASN ARG SEQRES 18 A 440 HIS GLY ALA ARG TYR PRO SER TYR ASN THR ILE VAL GLY SEQRES 19 A 440 SER GLY GLU ASN GLY CYS ILE LEU HIS TYR THR GLU ASN SEQRES 20 A 440 GLU CYS GLU MET ARG ASP GLY ASP LEU VAL LEU ILE ASP SEQRES 21 A 440 ALA GLY CYS GLU TYR LYS GLY TYR ALA GLY ASP ILE THR SEQRES 22 A 440 ARG THR PHE PRO VAL ASN GLY LYS PHE THR GLN ALA GLN SEQRES 23 A 440 ARG GLU ILE TYR ASP ILE VAL LEU GLU SER LEU GLU THR SEQRES 24 A 440 SER LEU ARG LEU TYR ARG PRO GLY THR SER ILE LEU GLU SEQRES 25 A 440 VAL THR GLY GLU VAL VAL ARG ILE MET VAL SER GLY LEU SEQRES 26 A 440 VAL LYS LEU GLY ILE LEU LYS GLY ASP VAL ASP GLU LEU SEQRES 27 A 440 ILE ALA GLN ASN ALA HIS ARG PRO PHE PHE MET HIS GLY SEQRES 28 A 440 LEU SER HIS TRP LEU GLY LEU ASP VAL HIS ASP VAL GLY SEQRES 29 A 440 VAL TYR GLY GLN ASP ARG SER ARG ILE LEU GLU PRO GLY SEQRES 30 A 440 MET VAL LEU THR VAL GLU PRO GLY LEU TYR ILE ALA PRO SEQRES 31 A 440 ASP ALA GLU VAL PRO GLU GLN TYR ARG GLY ILE GLY ILE SEQRES 32 A 440 ARG ILE GLU ASP ASP ILE VAL ILE THR GLU THR GLY ASN SEQRES 33 A 440 GLU ASN LEU THR ALA SER VAL VAL LYS LYS PRO GLU GLU SEQRES 34 A 440 ILE GLU ALA LEU MET VAL ALA ALA ARG LYS GLN HET ZN A1001 1 HET ZN A1002 1 HET MG A1003 1 HET FLC A1005 13 HET ZN A1006 1 HET ZN A1007 1 HET MRD A1009 8 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM FLC CITRATE ANION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 ZN 4(ZN 2+) FORMUL 4 MG MG 2+ FORMUL 5 FLC C6 H5 O7 3- FORMUL 8 MRD C6 H14 O2 FORMUL 9 HOH *216(H2 O) HELIX 1 1 SER A 4 MET A 19 1 16 HELIX 2 2 ASN A 46 GLY A 54 1 9 HELIX 3 3 ASP A 82 GLY A 90 1 9 HELIX 4 4 ALA A 97 GLY A 103 1 7 HELIX 5 5 GLU A 112 ASN A 122 1 11 HELIX 6 6 TYR A 134 GLY A 151 1 18 HELIX 7 7 SER A 152 ASN A 155 5 4 HELIX 8 8 TRP A 165 LEU A 174 1 10 HELIX 9 9 SER A 177 CYS A 202 1 26 HELIX 10 10 PHE A 207 HIS A 222 1 16 HELIX 11 11 GLU A 237 ILE A 241 5 5 HELIX 12 12 THR A 283 TYR A 304 1 22 HELIX 13 13 SER A 309 LEU A 328 1 20 HELIX 14 14 ASP A 334 GLN A 341 1 8 HELIX 15 15 GLY A 367 SER A 371 5 5 HELIX 16 16 PRO A 395 ARG A 399 5 5 HELIX 17 17 LYS A 426 ARG A 438 1 13 SHEET 1 AA 6 ARG A 106 ALA A 109 0 SHEET 2 AA 6 HIS A 71 ASN A 78 1 O SER A 74 N ARG A 106 SHEET 3 AA 6 VAL A 61 ASP A 68 -1 O VAL A 61 N PHE A 77 SHEET 4 AA 6 SER A 23 PHE A 28 -1 O SER A 23 N LYS A 66 SHEET 5 AA 6 VAL A 126 HIS A 129 1 O VAL A 126 N ALA A 24 SHEET 6 AA 6 THR A 161 ILE A 163 1 O THR A 161 N VAL A 127 SHEET 1 AB 2 THR A 34 SER A 36 0 SHEET 2 AB 2 SER A 39 GLU A 40 -1 O SER A 39 N ARG A 35 SHEET 1 AC 3 TYR A 226 PRO A 227 0 SHEET 2 AC 3 CYS A 263 TYR A 265 -1 O GLU A 264 N TYR A 226 SHEET 3 AC 3 TYR A 268 ALA A 269 -1 O TYR A 268 N TYR A 265 SHEET 1 AD 3 ILE A 232 SER A 235 0 SHEET 2 AD 3 LEU A 256 ALA A 261 -1 O LEU A 258 N GLY A 234 SHEET 3 AD 3 ILE A 272 PRO A 277 -1 O ILE A 272 N ALA A 261 SHEET 1 AE 3 VAL A 379 VAL A 382 0 SHEET 2 AE 3 ASP A 407 ILE A 411 -1 O ASP A 407 N VAL A 382 SHEET 3 AE 3 ASN A 416 ASN A 418 -1 O GLU A 417 N VAL A 410 SHEET 1 AF 2 GLY A 385 ILE A 388 0 SHEET 2 AF 2 ILE A 401 ARG A 404 -1 O ILE A 401 N ILE A 388 LINK OD2 ASP A 48 ZN ZN A1006 1555 1555 2.14 LINK NE2 HIS A 71 ZN ZN A1007 1555 1555 2.02 LINK NE2 HIS A 170 ZN ZN A1006 1555 1555 1.99 LINK OD1 ASP A 260 ZN ZN A1002 1555 1555 2.06 LINK OD2 ASP A 260 ZN ZN A1002 1555 1555 2.56 LINK OD2 ASP A 271 ZN ZN A1001 1555 1555 2.19 LINK OD1 ASP A 271 ZN ZN A1002 1555 1555 2.06 LINK NE2 HIS A 354 ZN ZN A1001 1555 1555 2.11 LINK OE2 GLU A 383 ZN ZN A1001 1555 1555 2.35 LINK OE2 GLU A 406 ZN ZN A1001 1555 1555 2.15 LINK OE1 GLU A 406 ZN ZN A1002 1555 1555 2.06 LINK ZN ZN A1001 O HOH A2209 1555 1555 2.08 LINK ZN ZN A1002 O HOH A2209 1555 1555 1.90 LINK MG MG A1003 O HOH A2211 1555 1555 2.17 LINK MG MG A1003 O HOH A2212 1555 1555 2.17 LINK MG MG A1003 O HOH A2213 1555 1555 2.18 LINK MG MG A1003 O HOH A2214 1555 1555 2.18 LINK MG MG A1003 O HOH A2215 1555 1555 2.18 LINK MG MG A1003 O HOH A2216 1555 1555 2.17 SITE 1 AC1 7 ASP A 271 HIS A 354 THR A 381 GLU A 383 SITE 2 AC1 7 GLU A 406 ZN A1002 HOH A2209 SITE 1 AC2 7 TYR A 229 ASP A 260 ASP A 271 THR A 273 SITE 2 AC2 7 GLU A 406 ZN A1001 HOH A2209 SITE 1 AC3 4 ARG A 186 MET A 193 ARG A 221 HIS A 222 SITE 1 AC4 2 ASP A 48 HIS A 170 SITE 1 AC5 1 HIS A 71 SITE 1 AC6 6 HOH A2211 HOH A2212 HOH A2213 HOH A2214 SITE 2 AC6 6 HOH A2215 HOH A2216 SITE 1 AC7 6 TRP A 88 HIS A 243 GLY A 351 GLU A 383 SITE 2 AC7 6 HOH A2170 HOH A2210 CRYST1 138.814 138.814 230.914 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004331 0.00000