HEADER BACTERIAL PROTEIN 14-JAN-05 2BHM TITLE CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV SECRETION SYSTEM PROTEIN VIRB8; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: RESIDUES 77-239; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOVAR SUIS; SOURCE 3 ORGANISM_COMMON: BRUCELLA SUIS; SOURCE 4 ORGANISM_TAXID: 29461; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 PLYSS KEYWDS BACTERIAL PROTEIN, BACTERIAL TYPE IV SECRETION EXPDTA X-RAY DIFFRACTION AUTHOR R.BAYLISS,C.BARON,G.WAKSMAN REVDAT 4 08-MAY-24 2BHM 1 REMARK REVDAT 3 24-FEB-09 2BHM 1 VERSN REVDAT 2 31-MAR-05 2BHM 1 JRNL REVDAT 1 16-MAR-05 2BHM 0 JRNL AUTH L.TERRADOT,R.BAYLISS,C.OOMEN,G.LEONARD,C.BARON,G.WAKSMAN JRNL TITL STRUCTURES OF TWO CORE SUBUNITS OF THE BACTERIAL TYPE IV JRNL TITL 2 SECRETION SYSTEM, VIRB8 FROM BRUCELLA SUIS AND COMB10 FROM JRNL TITL 3 HELICOBACTER PYLORI JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 4596 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15764702 JRNL DOI 10.1073/PNAS.0408927102 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 41354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2083 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.73100 REMARK 3 B22 (A**2) : -4.73100 REMARK 3 B33 (A**2) : 9.46200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 34.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1290021515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 22.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: SHELXD, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 101.37850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.54450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.77225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 101.37850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.31675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.31675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 101.37850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.77225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 101.37850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.54450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 101.37850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.54450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 101.37850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 77.31675 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 25.77225 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 101.37850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.77225 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 77.31675 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 101.37850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 101.37850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.54450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ACCORDING TO THE AUTHORS OF THIS ENTRY, REMARK 300 THE DIMER THAT ISGENERATED BY REMARK 350 BELOW REMARK 300 MAY SHOW A LIKELY MODE OFSELF-ASSEMBLY OF VIRB8 REMARK 300 WHICH IS KNOWN TO SELF-ASSOCIATETO FORM A REMARK 300 LARGE COMPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.08900 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 76 REMARK 465 ARG A 77 REMARK 465 VAL A 78 REMARK 465 ASN A 79 REMARK 465 ALA A 80 REMARK 465 GLN A 81 REMARK 465 THR A 82 REMARK 465 GLY A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 ASP A 86 REMARK 465 ILE A 87 REMARK 465 LEU A 88 REMARK 465 THR A 89 REMARK 465 SER A 90 REMARK 465 LEU A 91 REMARK 465 ASP A 92 REMARK 465 GLU A 93 REMARK 465 LYS A 94 REMARK 465 SER A 95 REMARK 465 VAL A 96 REMARK 465 THR A 187 REMARK 465 ASN A 188 REMARK 465 GLU A 189 REMARK 465 THR A 190 REMARK 465 GLY A 236 REMARK 465 VAL A 237 REMARK 465 VAL A 238 REMARK 465 GLN A 239 REMARK 465 ALA B 76 REMARK 465 ARG B 77 REMARK 465 VAL B 78 REMARK 465 ASN B 79 REMARK 465 ALA B 80 REMARK 465 GLN B 81 REMARK 465 THR B 82 REMARK 465 GLY B 83 REMARK 465 ALA B 84 REMARK 465 PRO B 85 REMARK 465 ASP B 86 REMARK 465 ILE B 87 REMARK 465 LEU B 88 REMARK 465 THR B 89 REMARK 465 SER B 90 REMARK 465 LEU B 91 REMARK 465 ASP B 92 REMARK 465 GLU B 93 REMARK 465 LYS B 94 REMARK 465 SER B 95 REMARK 465 VAL B 96 REMARK 465 ASN B 188 REMARK 465 GLU B 189 REMARK 465 THR B 190 REMARK 465 GLY B 191 REMARK 465 GLY B 236 REMARK 465 VAL B 237 REMARK 465 VAL B 238 REMARK 465 GLN B 239 REMARK 465 ALA C 76 REMARK 465 ARG C 77 REMARK 465 VAL C 78 REMARK 465 ASN C 79 REMARK 465 ALA C 80 REMARK 465 GLN C 81 REMARK 465 THR C 82 REMARK 465 GLY C 83 REMARK 465 ALA C 84 REMARK 465 PRO C 85 REMARK 465 ASP C 86 REMARK 465 ILE C 87 REMARK 465 LEU C 88 REMARK 465 THR C 89 REMARK 465 SER C 90 REMARK 465 LEU C 91 REMARK 465 ASP C 92 REMARK 465 GLU C 93 REMARK 465 LYS C 94 REMARK 465 SER C 95 REMARK 465 VAL C 96 REMARK 465 ASN C 188 REMARK 465 GLU C 189 REMARK 465 THR C 190 REMARK 465 GLY C 191 REMARK 465 GLY C 236 REMARK 465 VAL C 237 REMARK 465 VAL C 238 REMARK 465 GLN C 239 REMARK 465 ALA D 76 REMARK 465 ARG D 77 REMARK 465 VAL D 78 REMARK 465 ASN D 79 REMARK 465 ALA D 80 REMARK 465 GLN D 81 REMARK 465 THR D 82 REMARK 465 GLY D 83 REMARK 465 ALA D 84 REMARK 465 PRO D 85 REMARK 465 ASP D 86 REMARK 465 ILE D 87 REMARK 465 LEU D 88 REMARK 465 THR D 89 REMARK 465 SER D 90 REMARK 465 LEU D 91 REMARK 465 ASP D 92 REMARK 465 GLU D 93 REMARK 465 LYS D 94 REMARK 465 SER D 95 REMARK 465 VAL D 96 REMARK 465 ASN D 188 REMARK 465 GLU D 189 REMARK 465 THR D 190 REMARK 465 GLY D 191 REMARK 465 ASP D 192 REMARK 465 GLY D 236 REMARK 465 VAL D 237 REMARK 465 VAL D 238 REMARK 465 GLN D 239 REMARK 465 ALA E 76 REMARK 465 ARG E 77 REMARK 465 VAL E 78 REMARK 465 ASN E 79 REMARK 465 ALA E 80 REMARK 465 GLN E 81 REMARK 465 THR E 82 REMARK 465 GLY E 83 REMARK 465 ALA E 84 REMARK 465 PRO E 85 REMARK 465 ASP E 86 REMARK 465 ILE E 87 REMARK 465 LEU E 88 REMARK 465 THR E 89 REMARK 465 SER E 90 REMARK 465 LEU E 91 REMARK 465 ASP E 92 REMARK 465 GLU E 93 REMARK 465 LYS E 94 REMARK 465 SER E 95 REMARK 465 VAL E 96 REMARK 465 ASN E 188 REMARK 465 GLU E 189 REMARK 465 THR E 190 REMARK 465 GLY E 191 REMARK 465 GLY E 236 REMARK 465 VAL E 237 REMARK 465 VAL E 238 REMARK 465 GLN E 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 MET A 235 CA C O CB CG SD CE REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 MET B 235 CA C O CB CG SD CE REMARK 470 LYS C 149 CG CD CE NZ REMARK 470 MET C 235 CA C O CB CG SD CE REMARK 470 LYS D 149 CG CD CE NZ REMARK 470 MET D 235 CA C O CB CG SD CE REMARK 470 LYS E 149 CG CD CE NZ REMARK 470 MET E 235 CA C O CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 179 OE2 GLU A 234 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 221 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO D 221 C - N - CA ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 208 104.16 -37.60 REMARK 500 LYS B 173 15.92 -146.32 REMARK 500 ASN B 208 102.68 -25.74 REMARK 500 ASN B 220 67.80 -158.68 REMARK 500 GLU B 234 70.32 -117.74 REMARK 500 MET C 131 2.15 -66.90 REMARK 500 SER C 157 33.28 -92.46 REMARK 500 ASN C 208 107.08 -37.80 REMARK 500 GLU C 234 68.09 -101.52 REMARK 500 VAL D 166 -61.82 -90.42 REMARK 500 ASN D 208 107.95 -43.67 REMARK 500 GLU D 234 75.68 -118.40 REMARK 500 LYS E 173 15.69 -140.45 REMARK 500 ASN E 208 108.78 -32.43 REMARK 500 ASN E 220 64.70 -158.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. DBREF 2BHM A 76 76 PDB 2BHM 2BHM 76 76 DBREF 2BHM A 77 239 UNP Q7CEG3 Q7CEG3 77 239 DBREF 2BHM B 76 76 PDB 2BHM 2BHM 76 76 DBREF 2BHM B 77 239 UNP Q7CEG3 Q7CEG3 77 239 DBREF 2BHM C 76 76 PDB 2BHM 2BHM 76 76 DBREF 2BHM C 77 239 UNP Q7CEG3 Q7CEG3 77 239 DBREF 2BHM D 76 76 PDB 2BHM 2BHM 76 76 DBREF 2BHM D 77 239 UNP Q7CEG3 Q7CEG3 77 239 DBREF 2BHM E 76 76 PDB 2BHM 2BHM 76 76 DBREF 2BHM E 77 239 UNP Q7CEG3 Q7CEG3 77 239 SEQRES 1 A 164 ALA ARG VAL ASN ALA GLN THR GLY ALA PRO ASP ILE LEU SEQRES 2 A 164 THR SER LEU ASP GLU LYS SER VAL SER TYR ASP THR VAL SEQRES 3 A 164 MET ASP LYS TYR TRP LEU SER GLN TYR VAL ILE ALA ARG SEQRES 4 A 164 GLU THR TYR ASP TRP TYR THR LEU GLN LYS ASP TYR GLU SEQRES 5 A 164 THR VAL GLY MET LEU SER SER PRO SER GLU GLY GLN SER SEQRES 6 A 164 TYR ALA SER GLN PHE GLN GLY ASP LYS ALA LEU ASP LYS SEQRES 7 A 164 GLN TYR GLY SER ASN VAL ARG THR SER VAL THR ILE VAL SEQRES 8 A 164 SER ILE VAL PRO ASN GLY LYS GLY ILE GLY THR VAL ARG SEQRES 9 A 164 PHE ALA LYS THR THR LYS ARG THR ASN GLU THR GLY ASP SEQRES 10 A 164 GLY GLU THR THR HIS TRP ILE ALA THR ILE GLY TYR GLN SEQRES 11 A 164 TYR VAL ASN PRO SER LEU MET SER GLU SER ALA ARG LEU SEQRES 12 A 164 THR ASN PRO LEU GLY PHE ASN VAL THR SER TYR ARG VAL SEQRES 13 A 164 ASP PRO GLU MET GLY VAL VAL GLN SEQRES 1 B 164 ALA ARG VAL ASN ALA GLN THR GLY ALA PRO ASP ILE LEU SEQRES 2 B 164 THR SER LEU ASP GLU LYS SER VAL SER TYR ASP THR VAL SEQRES 3 B 164 MET ASP LYS TYR TRP LEU SER GLN TYR VAL ILE ALA ARG SEQRES 4 B 164 GLU THR TYR ASP TRP TYR THR LEU GLN LYS ASP TYR GLU SEQRES 5 B 164 THR VAL GLY MET LEU SER SER PRO SER GLU GLY GLN SER SEQRES 6 B 164 TYR ALA SER GLN PHE GLN GLY ASP LYS ALA LEU ASP LYS SEQRES 7 B 164 GLN TYR GLY SER ASN VAL ARG THR SER VAL THR ILE VAL SEQRES 8 B 164 SER ILE VAL PRO ASN GLY LYS GLY ILE GLY THR VAL ARG SEQRES 9 B 164 PHE ALA LYS THR THR LYS ARG THR ASN GLU THR GLY ASP SEQRES 10 B 164 GLY GLU THR THR HIS TRP ILE ALA THR ILE GLY TYR GLN SEQRES 11 B 164 TYR VAL ASN PRO SER LEU MET SER GLU SER ALA ARG LEU SEQRES 12 B 164 THR ASN PRO LEU GLY PHE ASN VAL THR SER TYR ARG VAL SEQRES 13 B 164 ASP PRO GLU MET GLY VAL VAL GLN SEQRES 1 C 164 ALA ARG VAL ASN ALA GLN THR GLY ALA PRO ASP ILE LEU SEQRES 2 C 164 THR SER LEU ASP GLU LYS SER VAL SER TYR ASP THR VAL SEQRES 3 C 164 MET ASP LYS TYR TRP LEU SER GLN TYR VAL ILE ALA ARG SEQRES 4 C 164 GLU THR TYR ASP TRP TYR THR LEU GLN LYS ASP TYR GLU SEQRES 5 C 164 THR VAL GLY MET LEU SER SER PRO SER GLU GLY GLN SER SEQRES 6 C 164 TYR ALA SER GLN PHE GLN GLY ASP LYS ALA LEU ASP LYS SEQRES 7 C 164 GLN TYR GLY SER ASN VAL ARG THR SER VAL THR ILE VAL SEQRES 8 C 164 SER ILE VAL PRO ASN GLY LYS GLY ILE GLY THR VAL ARG SEQRES 9 C 164 PHE ALA LYS THR THR LYS ARG THR ASN GLU THR GLY ASP SEQRES 10 C 164 GLY GLU THR THR HIS TRP ILE ALA THR ILE GLY TYR GLN SEQRES 11 C 164 TYR VAL ASN PRO SER LEU MET SER GLU SER ALA ARG LEU SEQRES 12 C 164 THR ASN PRO LEU GLY PHE ASN VAL THR SER TYR ARG VAL SEQRES 13 C 164 ASP PRO GLU MET GLY VAL VAL GLN SEQRES 1 D 164 ALA ARG VAL ASN ALA GLN THR GLY ALA PRO ASP ILE LEU SEQRES 2 D 164 THR SER LEU ASP GLU LYS SER VAL SER TYR ASP THR VAL SEQRES 3 D 164 MET ASP LYS TYR TRP LEU SER GLN TYR VAL ILE ALA ARG SEQRES 4 D 164 GLU THR TYR ASP TRP TYR THR LEU GLN LYS ASP TYR GLU SEQRES 5 D 164 THR VAL GLY MET LEU SER SER PRO SER GLU GLY GLN SER SEQRES 6 D 164 TYR ALA SER GLN PHE GLN GLY ASP LYS ALA LEU ASP LYS SEQRES 7 D 164 GLN TYR GLY SER ASN VAL ARG THR SER VAL THR ILE VAL SEQRES 8 D 164 SER ILE VAL PRO ASN GLY LYS GLY ILE GLY THR VAL ARG SEQRES 9 D 164 PHE ALA LYS THR THR LYS ARG THR ASN GLU THR GLY ASP SEQRES 10 D 164 GLY GLU THR THR HIS TRP ILE ALA THR ILE GLY TYR GLN SEQRES 11 D 164 TYR VAL ASN PRO SER LEU MET SER GLU SER ALA ARG LEU SEQRES 12 D 164 THR ASN PRO LEU GLY PHE ASN VAL THR SER TYR ARG VAL SEQRES 13 D 164 ASP PRO GLU MET GLY VAL VAL GLN SEQRES 1 E 164 ALA ARG VAL ASN ALA GLN THR GLY ALA PRO ASP ILE LEU SEQRES 2 E 164 THR SER LEU ASP GLU LYS SER VAL SER TYR ASP THR VAL SEQRES 3 E 164 MET ASP LYS TYR TRP LEU SER GLN TYR VAL ILE ALA ARG SEQRES 4 E 164 GLU THR TYR ASP TRP TYR THR LEU GLN LYS ASP TYR GLU SEQRES 5 E 164 THR VAL GLY MET LEU SER SER PRO SER GLU GLY GLN SER SEQRES 6 E 164 TYR ALA SER GLN PHE GLN GLY ASP LYS ALA LEU ASP LYS SEQRES 7 E 164 GLN TYR GLY SER ASN VAL ARG THR SER VAL THR ILE VAL SEQRES 8 E 164 SER ILE VAL PRO ASN GLY LYS GLY ILE GLY THR VAL ARG SEQRES 9 E 164 PHE ALA LYS THR THR LYS ARG THR ASN GLU THR GLY ASP SEQRES 10 E 164 GLY GLU THR THR HIS TRP ILE ALA THR ILE GLY TYR GLN SEQRES 11 E 164 TYR VAL ASN PRO SER LEU MET SER GLU SER ALA ARG LEU SEQRES 12 E 164 THR ASN PRO LEU GLY PHE ASN VAL THR SER TYR ARG VAL SEQRES 13 E 164 ASP PRO GLU MET GLY VAL VAL GLN FORMUL 6 HOH *61(H2 O) HELIX 1 1 TYR A 98 GLU A 115 1 18 HELIX 2 2 LEU A 122 MET A 131 1 10 HELIX 3 3 PRO A 135 PHE A 145 1 11 HELIX 4 4 LEU A 151 TYR A 155 1 5 HELIX 5 5 ASN A 208 MET A 212 5 5 HELIX 6 6 GLU A 214 THR A 219 1 6 HELIX 7 7 TYR B 98 GLU B 115 1 18 HELIX 8 8 LEU B 122 MET B 131 1 10 HELIX 9 9 PRO B 135 PHE B 145 1 11 HELIX 10 10 LEU B 151 TYR B 155 1 5 HELIX 11 11 ASN B 208 MET B 212 5 5 HELIX 12 12 GLU B 214 THR B 219 1 6 HELIX 13 13 TYR C 98 GLU C 115 1 18 HELIX 14 14 LEU C 122 MET C 131 1 10 HELIX 15 15 PRO C 135 PHE C 145 1 11 HELIX 16 16 LEU C 151 TYR C 155 1 5 HELIX 17 17 ASN C 208 MET C 212 5 5 HELIX 18 18 GLU C 214 THR C 219 1 6 HELIX 19 19 TYR D 98 GLU D 115 1 18 HELIX 20 20 LEU D 122 MET D 131 1 10 HELIX 21 21 PRO D 135 PHE D 145 1 11 HELIX 22 22 LEU D 151 TYR D 155 1 5 HELIX 23 23 ASN D 208 MET D 212 5 5 HELIX 24 24 GLU D 214 THR D 219 1 6 HELIX 25 25 TYR E 98 GLU E 115 1 18 HELIX 26 26 LEU E 122 MET E 131 1 10 HELIX 27 27 PRO E 135 PHE E 145 1 11 HELIX 28 28 LEU E 151 TYR E 155 1 5 HELIX 29 29 ASN E 208 MET E 212 5 5 HELIX 30 30 GLU E 214 THR E 219 1 6 SHEET 1 AA 4 VAL A 159 PRO A 170 0 SHEET 2 AA 4 ILE A 175 LYS A 185 -1 O THR A 177 N VAL A 169 SHEET 3 AA 4 GLU A 194 TYR A 206 -1 O GLU A 194 N THR A 184 SHEET 4 AA 4 PHE A 224 PRO A 233 -1 O ASN A 225 N GLN A 205 SHEET 1 BA 4 VAL B 159 PRO B 170 0 SHEET 2 BA 4 ILE B 175 LYS B 185 -1 O THR B 177 N VAL B 169 SHEET 3 BA 4 GLU B 194 TYR B 206 -1 O GLU B 194 N THR B 184 SHEET 4 BA 4 PHE B 224 PRO B 233 -1 O ASN B 225 N GLN B 205 SHEET 1 CA 4 VAL C 159 PRO C 170 0 SHEET 2 CA 4 ILE C 175 LYS C 185 -1 O THR C 177 N VAL C 169 SHEET 3 CA 4 GLU C 194 TYR C 206 -1 O GLU C 194 N THR C 184 SHEET 4 CA 4 PHE C 224 PRO C 233 -1 O ASN C 225 N GLN C 205 SHEET 1 DA 4 VAL D 159 PRO D 170 0 SHEET 2 DA 4 ILE D 175 LYS D 185 -1 O THR D 177 N VAL D 169 SHEET 3 DA 4 GLU D 194 TYR D 206 -1 O GLU D 194 N THR D 184 SHEET 4 DA 4 PHE D 224 PRO D 233 -1 O ASN D 225 N GLN D 205 SHEET 1 EA 4 VAL E 159 PRO E 170 0 SHEET 2 EA 4 ILE E 175 LYS E 185 -1 O THR E 177 N VAL E 169 SHEET 3 EA 4 GLU E 194 TYR E 206 -1 O GLU E 194 N THR E 184 SHEET 4 EA 4 PHE E 224 PRO E 233 -1 O ASN E 225 N GLN E 205 CRYST1 202.757 202.757 103.089 90.00 90.00 90.00 I 41 2 2 80 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009700 0.00000