HEADER TRANSFERASE 01-FEB-05 2BJB TITLE MYCOBACTERIUM TUBERCULOSIS EPSP SYNTHASE IN UNLIGANDED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE, EPSPS, EPSP COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, SHIKIMATE PATHWAY, EPSP SYNTHASE, M.TUBERCULOSIS, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS PROJECT, XMTB, KEYWDS 3 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR G.P.BOURENKOV,G.S.KACHALOVA,N.STRIZHOV,M.BRUNING,A.VAGIN,H.D.BARTUNIK REVDAT 3 13-DEC-23 2BJB 1 LINK REVDAT 2 24-FEB-09 2BJB 1 VERSN REVDAT 1 09-MAR-06 2BJB 0 JRNL AUTH G.P.BOURENKOV,G.S.KACHALOVA,N.STRIZHOV,M.BRUNING,A.VAGIN, JRNL AUTH 2 H.D.BARTUNIK JRNL TITL MYCOBACTERIUM TUBERCULOSIS EPSP SYNTHASE IN UNLIGANDED STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.457 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3210 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3084 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4387 ; 1.888 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7100 ; 0.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 4.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3623 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 639 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 632 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3582 ; 0.249 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2102 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 111 ; 0.326 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2127 ; 2.108 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3414 ; 3.608 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 4.283 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 973 ; 6.735 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1290022788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : AU-COATED PLANAR, TOROIDAL REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M NA ACETATE, PH 6.10 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.43200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.69428 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.17067 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 51.43200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.69428 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.17067 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 51.43200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.69428 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.17067 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.38856 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.34133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 59.38856 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.34133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 59.38856 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.34133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 119 REMARK 465 PRO A 425 REMARK 465 GLY A 426 REMARK 465 GLN A 427 REMARK 465 GLY A 428 REMARK 465 TRP A 429 REMARK 465 GLY A 430 REMARK 465 TYR A 431 REMARK 465 PRO A 432 REMARK 465 GLN A 433 REMARK 465 PRO A 434 REMARK 465 ARG A 435 REMARK 465 SER A 436 REMARK 465 GLY A 437 REMARK 465 GLN A 438 REMARK 465 ARG A 439 REMARK 465 ALA A 440 REMARK 465 ARG A 441 REMARK 465 ARG A 442 REMARK 465 ALA A 443 REMARK 465 THR A 444 REMARK 465 GLY A 445 REMARK 465 GLN A 446 REMARK 465 GLY A 447 REMARK 465 SER A 448 REMARK 465 GLY A 449 REMARK 465 GLY A 450 REMARK 465 LYS A 451 REMARK 465 LEU A 452 REMARK 465 ALA A 453 REMARK 465 ALA A 454 REMARK 465 ALA A 455 REMARK 465 LEU A 456 REMARK 465 GLU A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 424 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2063 O HOH A 2064 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 101 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP A 131 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 305 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 403 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 83 73.80 -154.81 REMARK 500 ALA A 287 -158.89 -104.03 REMARK 500 ASP A 288 -81.56 -24.07 REMARK 500 SER A 289 44.08 -141.20 REMARK 500 VAL A 309 51.40 -145.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1429 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 152 O REMARK 620 2 SER A 154 OG 109.1 REMARK 620 3 GLY A 356 O 131.3 100.1 REMARK 620 4 PRO A 372 O 113.3 99.4 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1429 DBREF 2BJB A 1 450 UNP P22487 AROA_MYCTU 1 450 DBREF 2BJB A 451 462 PDB 2BJB 2BJB 451 462 SEQRES 1 A 462 MET LYS THR TRP PRO ALA PRO THR ALA PRO THR PRO VAL SEQRES 2 A 462 ARG ALA THR VAL THR VAL PRO GLY SER LYS SER GLN THR SEQRES 3 A 462 ASN ARG ALA LEU VAL LEU ALA ALA LEU ALA ALA ALA GLN SEQRES 4 A 462 GLY ARG GLY ALA SER THR ILE SER GLY ALA LEU ARG SER SEQRES 5 A 462 ARG ASP THR GLU LEU MET LEU ASP ALA LEU GLN THR LEU SEQRES 6 A 462 GLY LEU ARG VAL ASP GLY VAL GLY SER GLU LEU THR VAL SEQRES 7 A 462 SER GLY ARG ILE GLU PRO GLY PRO GLY ALA ARG VAL ASP SEQRES 8 A 462 CYS GLY LEU ALA GLY THR VAL LEU ARG PHE VAL PRO PRO SEQRES 9 A 462 LEU ALA ALA LEU GLY SER VAL PRO VAL THR PHE ASP GLY SEQRES 10 A 462 ASP GLN GLN ALA ARG GLY ARG PRO ILE ALA PRO LEU LEU SEQRES 11 A 462 ASP ALA LEU ARG GLU LEU GLY VAL ALA VAL ASP GLY THR SEQRES 12 A 462 GLY LEU PRO PHE ARG VAL ARG GLY ASN GLY SER LEU ALA SEQRES 13 A 462 GLY GLY THR VAL ALA ILE ASP ALA SER ALA SER SER GLN SEQRES 14 A 462 PHE VAL SER GLY LEU LEU LEU SER ALA ALA SER PHE THR SEQRES 15 A 462 ASP GLY LEU THR VAL GLN HIS THR GLY SER SER LEU PRO SEQRES 16 A 462 SER ALA PRO HIS ILE ALA MET THR ALA ALA MET LEU ARG SEQRES 17 A 462 GLN ALA GLY VAL ASP ILE ASP ASP SER THR PRO ASN ARG SEQRES 18 A 462 TRP GLN VAL ARG PRO GLY PRO VAL ALA ALA ARG ARG TRP SEQRES 19 A 462 ASP ILE GLU PRO ASP LEU THR ASN ALA VAL ALA PHE LEU SEQRES 20 A 462 SER ALA ALA VAL VAL SER GLY GLY THR VAL ARG ILE THR SEQRES 21 A 462 GLY TRP PRO ARG VAL SER VAL GLN PRO ALA ASP HIS ILE SEQRES 22 A 462 LEU ALA ILE LEU ARG GLN LEU ASN ALA VAL VAL ILE HIS SEQRES 23 A 462 ALA ASP SER SER LEU GLU VAL ARG GLY PRO THR GLY TYR SEQRES 24 A 462 ASP GLY PHE ASP VAL ASP LEU ARG ALA VAL GLY GLU LEU SEQRES 25 A 462 THR PRO SER VAL ALA ALA LEU ALA ALA LEU ALA SER PRO SEQRES 26 A 462 GLY SER VAL SER ARG LEU SER GLY ILE ALA HIS LEU ARG SEQRES 27 A 462 GLY HIS GLU THR ASP ARG LEU ALA ALA LEU SER THR GLU SEQRES 28 A 462 ILE ASN ARG LEU GLY GLY THR CYS ARG GLU THR PRO ASP SEQRES 29 A 462 GLY LEU VAL ILE THR ALA THR PRO LEU ARG PRO GLY ILE SEQRES 30 A 462 TRP ARG ALA TYR ALA ASP HIS ARG MET ALA MET ALA GLY SEQRES 31 A 462 ALA ILE ILE GLY LEU ARG VAL ALA GLY VAL GLU VAL ASP SEQRES 32 A 462 ASP ILE ALA ALA THR THR LYS THR LEU PRO GLU PHE PRO SEQRES 33 A 462 ARG LEU TRP ALA GLU MET VAL GLY PRO GLY GLN GLY TRP SEQRES 34 A 462 GLY TYR PRO GLN PRO ARG SER GLY GLN ARG ALA ARG ARG SEQRES 35 A 462 ALA THR GLY GLN GLY SER GLY GLY LYS LEU ALA ALA ALA SEQRES 36 A 462 LEU GLU HIS HIS HIS HIS HIS HET ACT A1424 4 HET ACT A1425 4 HET ACT A1426 4 HET ACT A1427 4 HET ACT A1428 4 HET NA A1429 1 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 ACT 5(C2 H3 O2 1-) FORMUL 7 NA NA 1+ FORMUL 8 HOH *232(H2 O) HELIX 1 1 SER A 22 GLN A 39 1 18 HELIX 2 2 SER A 52 LEU A 65 1 14 HELIX 3 3 ALA A 95 VAL A 102 1 8 HELIX 4 4 VAL A 102 ALA A 107 1 6 HELIX 5 5 ILE A 126 LEU A 136 1 11 HELIX 6 6 SER A 167 ALA A 178 1 12 HELIX 7 7 ALA A 179 PHE A 181 5 3 HELIX 8 8 ALA A 197 ALA A 210 1 14 HELIX 9 9 ASP A 239 GLY A 254 1 16 HELIX 10 10 PRO A 269 LEU A 280 1 12 HELIX 11 11 ARG A 307 GLU A 311 5 5 HELIX 12 12 LEU A 312 LEU A 322 1 11 HELIX 13 13 ILE A 334 HIS A 340 5 7 HELIX 14 14 ASP A 343 LEU A 355 1 13 HELIX 15 15 ASP A 383 VAL A 397 1 15 HELIX 16 16 ILE A 405 LYS A 410 1 6 HELIX 17 17 GLU A 414 VAL A 423 1 10 SHEET 1 AA 3 TRP A 4 PRO A 5 0 SHEET 2 AA 3 VAL A 400 VAL A 402 -1 O VAL A 402 N TRP A 4 SHEET 3 AA 3 GLY A 376 TRP A 378 1 O GLY A 376 N GLU A 401 SHEET 1 AB 4 ARG A 14 VAL A 17 0 SHEET 2 AB 4 THR A 256 THR A 260 1 O THR A 256 N ALA A 15 SHEET 3 AB 4 SER A 290 ARG A 294 -1 O LEU A 291 N ILE A 259 SHEET 4 AB 4 VAL A 283 ALA A 287 -1 O VAL A 283 N ARG A 294 SHEET 1 AC 4 LEU A 67 VAL A 72 0 SHEET 2 AC 4 GLU A 75 GLY A 80 -1 O GLU A 75 N VAL A 72 SHEET 3 AC 4 SER A 44 SER A 47 -1 O SER A 44 N VAL A 78 SHEET 4 AC 4 ARG A 233 ASP A 235 1 O TRP A 234 N SER A 47 SHEET 1 AD 4 ARG A 89 ASP A 91 0 SHEET 2 AD 4 PRO A 112 ASP A 116 1 O THR A 114 N VAL A 90 SHEET 3 AD 4 PHE A 147 ARG A 150 -1 O PHE A 147 N PHE A 115 SHEET 4 AD 4 VAL A 140 ASP A 141 -1 O ASP A 141 N ARG A 148 SHEET 1 AE 4 GLY A 158 ILE A 162 0 SHEET 2 AE 4 LEU A 185 HIS A 189 1 O THR A 186 N VAL A 160 SHEET 3 AE 4 ARG A 221 VAL A 224 -1 O TRP A 222 N VAL A 187 SHEET 4 AE 4 ILE A 214 ASP A 215 -1 O ASP A 215 N GLN A 223 SHEET 1 AF 4 ASP A 303 ASP A 305 0 SHEET 2 AF 4 VAL A 328 SER A 332 1 O ARG A 330 N VAL A 304 SHEET 3 AF 4 GLY A 365 THR A 369 -1 O LEU A 366 N LEU A 331 SHEET 4 AF 4 THR A 358 THR A 362 -1 O THR A 358 N THR A 369 LINK O ASN A 152 NA NA A1429 4445 1555 2.37 LINK OG SER A 154 NA NA A1429 4445 1555 2.34 LINK O GLY A 356 NA NA A1429 1555 1555 2.48 LINK O PRO A 372 NA NA A1429 1555 1555 2.23 CISPEP 1 LEU A 145 PRO A 146 0 -5.47 SITE 1 AC1 7 TRP A 4 PRO A 5 ARG A 41 PRO A 228 SITE 2 AC1 7 ALA A 230 HOH A2032 HOH A2228 SITE 1 AC2 6 ARG A 68 GLY A 80 LYS A 410 HOH A2054 SITE 2 AC2 6 HOH A2218 HOH A2229 SITE 1 AC3 6 ARG A 51 ARG A 68 SER A 79 PRO A 413 SITE 2 AC3 6 GLU A 414 HOH A2230 SITE 1 AC4 7 ARG A 294 GLY A 295 ARG A 354 ARG A 379 SITE 2 AC4 7 HOH A2162 HOH A2231 HOH A2232 SITE 1 AC5 3 ARG A 14 THR A 342 ASP A 343 SITE 1 AC6 4 ASN A 152 SER A 154 GLY A 356 PRO A 372 CRYST1 102.864 102.864 99.512 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009722 0.005613 0.000000 0.00000 SCALE2 0.000000 0.011226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010049 0.00000