HEADER HYDROLASE 02-FEB-05 2BJG TITLE CRYSTAL STRUCTURE OF CONJUGATED BILE ACID HYDROLASE FROM CLOSTRIDIUM TITLE 2 PERFRINGENS IN COMPLEX WITH REACTION PRODUCTS TAURINE AND TITLE 3 DEOXYCHOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLOYLGLYCINE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CONJUGATED BILE ACID HYDROLASE, CBAH, BILE SALT HYDROLASE; COMPND 5 EC: 3.5.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK233-2 KEYWDS HYDROLASE, AMIDOHYDROLASE, NTN-HYDROLASE, CBAH, BSH, BILE ACIDS EXPDTA X-RAY DIFFRACTION AUTHOR M.ROSSOCHA,R.SCHULTZ-HEIENBROK,H.VON MOELLER,J.P.COLEMAN,W.SAENGER REVDAT 4 13-DEC-23 2BJG 1 REMARK REVDAT 3 24-FEB-09 2BJG 1 VERSN REVDAT 2 05-JUL-05 2BJG 1 SOURCE REVDAT 1 03-MAY-05 2BJG 0 JRNL AUTH M.ROSSOCHA,R.SCHULTZ-HEIENBROK,H.VON MOELLER,J.P.COLEMAN, JRNL AUTH 2 W.SAENGER JRNL TITL CONJUGATED BILE ACID HYDROLASE IS A TETRAMERIC N-TERMINAL JRNL TITL 2 THIOL HYDROLASE WITH SPECIFIC RECOGNITION OF ITS CHOLYL BUT JRNL TITL 3 NOT OF ITS TAURYL PRODUCT JRNL REF BIOCHEMISTRY V. 44 5739 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15823032 JRNL DOI 10.1021/BI0473206 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 32880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 403 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : 1.75000 REMARK 3 B33 (A**2) : -3.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5326 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7214 ; 1.054 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 5.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;37.529 ;25.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 930 ;12.973 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 810 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4030 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2292 ; 0.176 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3669 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 394 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 91 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3375 ; 0.442 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5286 ; 0.764 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2243 ; 0.817 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1928 ; 1.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 320 1 REMARK 3 1 B 2 B 320 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2536 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2536 ; 0.19 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1290022803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 200 MM AMMONIUMSULFATE, REMARK 280 100 MM BISTRIS PH 5.5, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 170.68350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.34175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 256.02525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 170.68350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 256.02525 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.34175 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -85.34175 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2039 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2188 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 41 CG1 ILE B 133 0.61 REMARK 500 O MET B 145 N ILE B 146 1.20 REMARK 500 OG SER A 90 CG2 VAL A 129 1.23 REMARK 500 CB ALA A 126 CD2 LEU A 163 1.28 REMARK 500 O TRP A 144 N VAL A 156 1.42 REMARK 500 ND2 ASN B 41 CD1 ILE B 133 1.44 REMARK 500 CZ PHE B 105 CZ3 TRP B 144 1.50 REMARK 500 OG SER A 43 O ILE A 133 1.51 REMARK 500 OD1 ASN B 82 OG1 THR B 141 1.59 REMARK 500 C MET A 145 O ILE A 154 1.68 REMARK 500 N LEU A 81 CD2 LEU A 142 1.68 REMARK 500 OD1 ASN A 99 ND2 ASN A 127 1.68 REMARK 500 CB PHE B 83 O THR B 141 1.71 REMARK 500 OG SER B 43 O ILE B 133 1.76 REMARK 500 CA ALA A 126 CD2 LEU A 163 1.76 REMARK 500 CG ASN B 41 CD1 ILE B 133 1.80 REMARK 500 ND2 ASN B 127 O HOH B 2072 1.81 REMARK 500 CB VAL B 102 OD1 ASN B 139 1.81 REMARK 500 OH TYR A 89 CA THR A 141 1.83 REMARK 500 CG MET A 145 O ILE A 154 1.84 REMARK 500 CB SER A 43 O SER A 134 1.88 REMARK 500 CA MET A 145 O ILE A 154 1.90 REMARK 500 CE1 PHE B 105 CH2 TRP B 144 1.92 REMARK 500 N TRP A 144 O VAL A 156 1.92 REMARK 500 CG ASN B 41 CG1 ILE B 133 1.92 REMARK 500 CD1 ILE B 94 OD1 ASN B 127 1.94 REMARK 500 O ASN B 82 CE1 HIS B 143 1.97 REMARK 500 ND2 ASN B 41 CB ILE B 133 1.98 REMARK 500 NE2 HIS B 143 O THR B 174 2.00 REMARK 500 NE2 HIS A 143 O THR A 174 2.01 REMARK 500 CE2 TYR A 89 O THR A 140 2.02 REMARK 500 CE MET A 145 ND2 ASN A 168 2.03 REMARK 500 OD1 ASN B 41 O ILE B 133 2.03 REMARK 500 CZ PHE B 105 CH2 TRP B 144 2.03 REMARK 500 O LEU B 81 CA LEU B 142 2.04 REMARK 500 OD1 ASN A 41 O ILE A 133 2.06 REMARK 500 CE2 TYR A 103 O PRO A 132 2.06 REMARK 500 CD2 LEU B 142 O HOH B 2050 2.07 REMARK 500 N PHE B 83 OG1 THR B 141 2.07 REMARK 500 CE2 PHE B 105 CE3 TRP B 144 2.07 REMARK 500 OG SER B 43 C ILE B 133 2.09 REMARK 500 CG TYR B 89 OD1 ASP B 130 2.10 REMARK 500 CD1 TYR B 89 CD1 ILE B 128 2.11 REMARK 500 O TRP A 144 C VAL A 155 2.12 REMARK 500 CB PRO B 138 O HOH B 2074 2.14 REMARK 500 O LEU B 81 N HIS B 143 2.15 REMARK 500 CE2 PHE B 105 CZ3 TRP B 144 2.15 REMARK 500 OE2 GLU B 307 OH TYR B 317 2.15 REMARK 500 O LEU A 81 CD2 LEU A 142 2.16 REMARK 500 CG1 VAL A 87 CG2 THR A 141 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 53 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 135 O SER B 25 1455 1.13 REMARK 500 CB ASN A 27 OE2 GLU B 135 1455 1.57 REMARK 500 OE2 GLU A 135 C SER B 25 1455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 138 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 138 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 MET B 145 CA - C - N ANGL. DEV. = 50.6 DEGREES REMARK 500 MET B 145 O - C - N ANGL. DEV. = -64.8 DEGREES REMARK 500 ILE B 146 C - N - CA ANGL. DEV. = 34.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 126 107.62 -7.22 REMARK 500 ASN A 127 97.89 -162.36 REMARK 500 VAL A 129 -161.16 -48.59 REMARK 500 ILE A 131 142.41 179.74 REMARK 500 PRO A 132 -152.51 -86.98 REMARK 500 ILE A 133 -57.89 -140.08 REMARK 500 SER A 134 -90.12 -98.82 REMARK 500 GLU A 135 -36.38 -137.61 REMARK 500 ASN A 136 -128.61 -127.27 REMARK 500 ILE A 137 133.80 69.43 REMARK 500 ASN A 139 101.18 -59.36 REMARK 500 THR A 140 -148.19 -74.82 REMARK 500 THR A 174 -117.83 -124.38 REMARK 500 ASN A 175 -144.53 -125.13 REMARK 500 PRO A 177 -159.78 -81.11 REMARK 500 ASP A 243 39.92 -142.86 REMARK 500 ILE B 128 38.83 -61.95 REMARK 500 PRO B 132 174.75 -57.26 REMARK 500 SER B 134 141.62 178.66 REMARK 500 GLU B 135 -148.40 49.47 REMARK 500 PRO B 138 -158.67 -42.11 REMARK 500 ASN B 139 -154.68 -112.10 REMARK 500 LEU B 142 129.99 -37.74 REMARK 500 THR B 174 -117.62 -123.92 REMARK 500 ASN B 175 -144.34 -124.62 REMARK 500 ASP B 243 41.02 -141.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET B 145 87.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BJF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CONJUGATED BILE ACID HYDROLASE FROM REMARK 900 CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH REACTION PRODUCTS TAURINE REMARK 900 AND DEOXYCHOLATE DBREF 2BJG A 1 329 UNP P54965 CBH_CLOPE 1 329 DBREF 2BJG B 1 329 UNP P54965 CBH_CLOPE 1 329 SEQRES 1 A 329 MET CYS THR GLY LEU ALA LEU GLU THR LYS ASP GLY LEU SEQRES 2 A 329 HIS LEU PHE GLY ARG ASN MET ASP ILE GLU TYR SER PHE SEQRES 3 A 329 ASN GLN SER ILE ILE PHE ILE PRO ARG ASN PHE LYS CYS SEQRES 4 A 329 VAL ASN LYS SER ASN LYS LYS GLU LEU THR THR LYS TYR SEQRES 5 A 329 ALA VAL LEU GLY MET GLY THR ILE PHE ASP ASP TYR PRO SEQRES 6 A 329 THR PHE ALA ASP GLY MET ASN GLU LYS GLY LEU GLY CYS SEQRES 7 A 329 ALA GLY LEU ASN PHE PRO VAL TYR VAL SER TYR SER LYS SEQRES 8 A 329 GLU ASP ILE GLU GLY LYS THR ASN ILE PRO VAL TYR ASN SEQRES 9 A 329 PHE LEU LEU TRP VAL LEU ALA ASN PHE SER SER VAL GLU SEQRES 10 A 329 GLU VAL LYS GLU ALA LEU LYS ASN ALA ASN ILE VAL ASP SEQRES 11 A 329 ILE PRO ILE SER GLU ASN ILE PRO ASN THR THR LEU HIS SEQRES 12 A 329 TRP MET ILE SER ASP ILE THR GLY LYS SER ILE VAL VAL SEQRES 13 A 329 GLU GLN THR LYS GLU LYS LEU ASN VAL PHE ASP ASN ASN SEQRES 14 A 329 ILE GLY VAL LEU THR ASN SER PRO THR PHE ASP TRP HIS SEQRES 15 A 329 VAL ALA ASN LEU ASN GLN TYR VAL GLY LEU ARG TYR ASN SEQRES 16 A 329 GLN VAL PRO GLU PHE LYS LEU GLY ASP GLN SER LEU THR SEQRES 17 A 329 ALA LEU GLY GLN GLY THR GLY LEU VAL GLY LEU PRO GLY SEQRES 18 A 329 ASP PHE THR PRO ALA SER ARG PHE ILE ARG VAL ALA PHE SEQRES 19 A 329 LEU ARG ASP ALA MET ILE LYS ASN ASP LYS ASP SER ILE SEQRES 20 A 329 ASP LEU ILE GLU PHE PHE HIS ILE LEU ASN ASN VAL ALA SEQRES 21 A 329 MET VAL ARG GLY SER THR ARG THR VAL GLU GLU LYS SER SEQRES 22 A 329 ASP LEU THR GLN TYR THR SER CYS MET CYS LEU GLU LYS SEQRES 23 A 329 GLY ILE TYR TYR TYR ASN THR TYR GLU ASN ASN GLN ILE SEQRES 24 A 329 ASN ALA ILE ASP MET ASN LYS GLU ASN LEU ASP GLY ASN SEQRES 25 A 329 GLU ILE LYS THR TYR LYS TYR ASN LYS THR LEU SER ILE SEQRES 26 A 329 ASN HIS VAL ASN SEQRES 1 B 329 MET CYS THR GLY LEU ALA LEU GLU THR LYS ASP GLY LEU SEQRES 2 B 329 HIS LEU PHE GLY ARG ASN MET ASP ILE GLU TYR SER PHE SEQRES 3 B 329 ASN GLN SER ILE ILE PHE ILE PRO ARG ASN PHE LYS CYS SEQRES 4 B 329 VAL ASN LYS SER ASN LYS LYS GLU LEU THR THR LYS TYR SEQRES 5 B 329 ALA VAL LEU GLY MET GLY THR ILE PHE ASP ASP TYR PRO SEQRES 6 B 329 THR PHE ALA ASP GLY MET ASN GLU LYS GLY LEU GLY CYS SEQRES 7 B 329 ALA GLY LEU ASN PHE PRO VAL TYR VAL SER TYR SER LYS SEQRES 8 B 329 GLU ASP ILE GLU GLY LYS THR ASN ILE PRO VAL TYR ASN SEQRES 9 B 329 PHE LEU LEU TRP VAL LEU ALA ASN PHE SER SER VAL GLU SEQRES 10 B 329 GLU VAL LYS GLU ALA LEU LYS ASN ALA ASN ILE VAL ASP SEQRES 11 B 329 ILE PRO ILE SER GLU ASN ILE PRO ASN THR THR LEU HIS SEQRES 12 B 329 TRP MET ILE SER ASP ILE THR GLY LYS SER ILE VAL VAL SEQRES 13 B 329 GLU GLN THR LYS GLU LYS LEU ASN VAL PHE ASP ASN ASN SEQRES 14 B 329 ILE GLY VAL LEU THR ASN SER PRO THR PHE ASP TRP HIS SEQRES 15 B 329 VAL ALA ASN LEU ASN GLN TYR VAL GLY LEU ARG TYR ASN SEQRES 16 B 329 GLN VAL PRO GLU PHE LYS LEU GLY ASP GLN SER LEU THR SEQRES 17 B 329 ALA LEU GLY GLN GLY THR GLY LEU VAL GLY LEU PRO GLY SEQRES 18 B 329 ASP PHE THR PRO ALA SER ARG PHE ILE ARG VAL ALA PHE SEQRES 19 B 329 LEU ARG ASP ALA MET ILE LYS ASN ASP LYS ASP SER ILE SEQRES 20 B 329 ASP LEU ILE GLU PHE PHE HIS ILE LEU ASN ASN VAL ALA SEQRES 21 B 329 MET VAL ARG GLY SER THR ARG THR VAL GLU GLU LYS SER SEQRES 22 B 329 ASP LEU THR GLN TYR THR SER CYS MET CYS LEU GLU LYS SEQRES 23 B 329 GLY ILE TYR TYR TYR ASN THR TYR GLU ASN ASN GLN ILE SEQRES 24 B 329 ASN ALA ILE ASP MET ASN LYS GLU ASN LEU ASP GLY ASN SEQRES 25 B 329 GLU ILE LYS THR TYR LYS TYR ASN LYS THR LEU SER ILE SEQRES 26 B 329 ASN HIS VAL ASN HET EDO A 330 4 HET EDO A 331 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *403(H2 O) HELIX 1 1 PRO A 101 TYR A 103 5 3 HELIX 2 2 ASN A 104 PHE A 113 1 10 HELIX 3 3 SER A 115 LYS A 124 1 10 HELIX 4 4 THR A 178 LEU A 186 1 9 HELIX 5 5 ASN A 187 VAL A 190 5 4 HELIX 6 6 GLY A 213 VAL A 217 5 5 HELIX 7 7 THR A 224 LYS A 244 1 21 HELIX 8 8 ASP A 245 ILE A 247 5 3 HELIX 9 9 ASP A 248 VAL A 259 1 12 HELIX 10 10 ASN A 305 GLU A 307 5 3 HELIX 11 11 PRO B 101 TYR B 103 5 3 HELIX 12 12 ASN B 104 PHE B 113 1 10 HELIX 13 13 SER B 115 LYS B 124 1 10 HELIX 14 14 THR B 178 LEU B 186 1 9 HELIX 15 15 ASN B 187 VAL B 190 5 4 HELIX 16 16 GLY B 213 VAL B 217 5 5 HELIX 17 17 THR B 224 LYS B 244 1 21 HELIX 18 18 ASP B 245 ILE B 247 5 3 HELIX 19 19 ASP B 248 VAL B 259 1 12 HELIX 20 20 ASN B 305 GLU B 307 5 3 SHEET 1 AA 7 VAL A 172 LEU A 173 0 SHEET 2 AA 7 THR A 3 GLU A 8 -1 O GLY A 4 N LEU A 173 SHEET 3 AA 7 HIS A 14 ILE A 22 -1 O LEU A 15 N LEU A 7 SHEET 4 AA 7 LEU A 275 CYS A 283 -1 O LEU A 275 N ILE A 22 SHEET 5 AA 7 ILE A 288 THR A 293 -1 O ILE A 288 N CYS A 283 SHEET 6 AA 7 ASN A 300 ASP A 303 -1 O ASN A 300 N TYR A 291 SHEET 7 AA 7 ASN B 326 HIS B 327 1 O ASN B 326 N ALA A 301 SHEET 1 AB 5 GLY A 77 ALA A 79 0 SHEET 2 AB 5 TYR A 64 ASN A 72 -1 O GLY A 70 N CYS A 78 SHEET 3 AB 5 VAL A 54 PHE A 61 -1 O LEU A 55 N MET A 71 SHEET 4 AB 5 SER A 29 ILE A 33 -1 O SER A 29 N GLY A 58 SHEET 5 AB 5 LYS A 315 LYS A 318 -1 O LYS A 315 N PHE A 32 SHEET 1 AC 2 LYS A 38 VAL A 40 0 SHEET 2 AC 2 GLU A 47 THR A 49 -1 O LEU A 48 N CYS A 39 SHEET 1 AD 2 SER A 153 GLN A 158 0 SHEET 2 AD 2 LEU A 163 ASN A 168 -1 O ASN A 164 N GLU A 157 SHEET 1 AE 2 GLU A 199 LEU A 202 0 SHEET 2 AE 2 GLN A 205 THR A 208 -1 O GLN A 205 N LEU A 202 SHEET 1 AF 7 ASN A 326 HIS A 327 0 SHEET 2 AF 7 ASN B 300 ASP B 303 1 N ALA B 301 O ASN A 326 SHEET 3 AF 7 ILE B 288 THR B 293 -1 O TYR B 289 N ILE B 302 SHEET 4 AF 7 LEU B 275 CYS B 283 -1 O THR B 279 N ASN B 292 SHEET 5 AF 7 HIS B 14 ILE B 22 -1 O PHE B 16 N MET B 282 SHEET 6 AF 7 THR B 3 GLU B 8 -1 O THR B 3 N ASN B 19 SHEET 7 AF 7 VAL B 172 LEU B 173 -1 O LEU B 173 N GLY B 4 SHEET 1 BA 8 LEU B 163 ASP B 167 0 SHEET 2 BA 8 SER B 153 GLN B 158 -1 O VAL B 155 N PHE B 166 SHEET 3 BA 8 HIS B 143 SER B 147 -1 O TRP B 144 N VAL B 156 SHEET 4 BA 8 GLY B 77 LEU B 81 -1 O GLY B 77 N SER B 147 SHEET 5 BA 8 TYR B 64 ASN B 72 -1 O ALA B 68 N GLY B 80 SHEET 6 BA 8 VAL B 54 PHE B 61 -1 O LEU B 55 N MET B 71 SHEET 7 BA 8 SER B 29 ILE B 33 -1 O SER B 29 N GLY B 58 SHEET 8 BA 8 LYS B 315 LYS B 318 -1 O LYS B 315 N PHE B 32 SHEET 1 BB 2 LYS B 38 VAL B 40 0 SHEET 2 BB 2 GLU B 47 THR B 49 -1 O LEU B 48 N CYS B 39 SHEET 1 BC 2 THR B 98 ASN B 99 0 SHEET 2 BC 2 ALA B 126 ASN B 127 0 SHEET 1 BD 2 GLU B 199 LEU B 202 0 SHEET 2 BD 2 GLN B 205 THR B 208 -1 O GLN B 205 N LEU B 202 CISPEP 1 SER A 176 PRO A 177 0 5.08 CISPEP 2 SER B 176 PRO B 177 0 5.07 SITE 1 AC1 5 ASN A 82 ASN A 175 GLY B 211 GLN B 212 SITE 2 AC1 5 HOH B2112 SITE 1 AC2 5 GLY A 211 GLN A 212 HOH A2206 ASN B 82 SITE 2 AC2 5 PRO B 84 CRYST1 63.784 63.784 341.367 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002929 0.00000 MTRIX1 1 -0.997000 -0.003000 -0.078000 62.59460 1 MTRIX2 1 -0.002000 -0.998000 0.068000 68.85458 1 MTRIX3 1 -0.078000 0.068000 0.995000 0.08593 1