HEADER TRANSFERASE 16-MAR-05 2BMU TITLE UMP KINASE FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ITS SUBSTRATE UMP TITLE 2 AND ITS SUBSTRATE ANALOG AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE; COMPND 5 EC: 2.7.4.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUKPFU KEYWDS UMP KINASE, AMINO ACID KINASE, PHOSPHORYL GROUP TRANSFER, PYRIMIDINE KEYWDS 2 BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MARCO-MARIN,F.GIL-ORTIZ,V.RUBIO REVDAT 5 16-OCT-24 2BMU 1 REMARK REVDAT 4 01-MAY-24 2BMU 1 LINK REVDAT 3 24-FEB-09 2BMU 1 VERSN REVDAT 2 09-NOV-05 2BMU 1 JRNL REVDAT 1 25-JUL-05 2BMU 0 JRNL AUTH C.MARCO-MARIN,F.GIL-ORTIZ,V.RUBIO JRNL TITL THE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS UMP KINASE JRNL TITL 2 PROVIDES INSIGHT INTO CATALYSIS AND REGULATION IN MICROBIAL JRNL TITL 3 PYRIMIDINE NUCLEOTIDE BIOSYNTHESIS. JRNL REF J.MOL.BIOL. V. 352 438 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16095620 JRNL DOI 10.1016/J.JMB.2005.07.045 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4898792.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2561 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.440 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 48.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ANP2.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : UMP2.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ANP2.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : UMP2.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1290023350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96865 REMARK 200 MONOCHROMATOR : SILICON (111) CRYSTAL REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR-USA, INC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 19.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: UNPUBLISHED SEMET PHASED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.28200 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.28200 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.28200 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.28200 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.28200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.28200 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.28200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.28200 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.28200 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.28200 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.28200 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.28200 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.28200 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.28200 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.28200 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.28200 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.28200 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.28200 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.28200 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.28200 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.28200 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.28200 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.28200 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.28200 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.28200 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.28200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 144.56400 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 144.56400 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 144.56400 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 144.56400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2010 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: CATALYSATOR OF THE PHOSPHORYLATION OF UMP TO UDP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 173 CB CG CD CE NZ REMARK 470 ILE A 175 CB CG1 CG2 REMARK 470 GLU A 176 CB CG CD OE1 OE2 REMARK 470 LYS A 177 CB CG CD CE NZ REMARK 470 THR B 147 OG1 CG2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 ALA B 156 CB REMARK 470 LYS B 157 CB CG CD CE NZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 74 O HOH A 2008 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -65.67 -138.32 REMARK 500 ARG A 85 -132.29 48.74 REMARK 500 THR A 114 -65.47 -126.86 REMARK 500 THR A 119 -169.26 -124.32 REMARK 500 ASP A 149 104.52 -59.83 REMARK 500 LYS A 152 -62.40 -124.72 REMARK 500 VAL A 171 -142.00 -139.92 REMARK 500 SER A 182 143.01 -176.73 REMARK 500 GLU B 15 -25.82 -147.44 REMARK 500 ARG B 85 -140.71 50.50 REMARK 500 THR B 114 -71.67 -124.87 REMARK 500 THR B 114 -71.95 -124.87 REMARK 500 PRO B 116 171.53 -57.50 REMARK 500 VAL B 171 -119.99 -104.02 REMARK 500 ASP B 209 50.38 -150.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1228 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD1 REMARK 620 2 THR A 120 OG1 110.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1229 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 121 OD1 REMARK 620 2 SER A 182 O 111.1 REMARK 620 3 ANP A1226 O1B 121.9 117.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 121 OD2 REMARK 620 2 SER B 182 O 101.7 REMARK 620 3 ANP B2000 O1B 125.0 95.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1229 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B2000 O1G REMARK 620 2 HOH B2023 O 111.8 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B2001 DBREF 2BMU A 0 0 PDB 2BMU 2BMU 0 0 DBREF 2BMU A 1 225 UNP Q8U122 PYRH_PYRFU 1 225 DBREF 2BMU B 0 0 PDB 2BMU 2BMU 0 0 DBREF 2BMU B 1 225 UNP Q8U122 PYRH_PYRFU 1 225 SEQRES 1 A 226 ALA MSE ARG ILE VAL PHE ASP ILE GLY GLY SER VAL LEU SEQRES 2 A 226 VAL PRO GLU ASN PRO ASP ILE ASP PHE ILE LYS GLU ILE SEQRES 3 A 226 ALA TYR GLN LEU THR LYS VAL SER GLU ASP HIS GLU VAL SEQRES 4 A 226 ALA VAL VAL VAL GLY GLY GLY LYS LEU ALA ARG LYS TYR SEQRES 5 A 226 ILE GLU VAL ALA GLU LYS PHE ASN SER SER GLU THR PHE SEQRES 6 A 226 LYS ASP PHE ILE GLY ILE GLN ILE THR ARG ALA ASN ALA SEQRES 7 A 226 MSE LEU LEU ILE ALA ALA LEU ARG GLU LYS ALA TYR PRO SEQRES 8 A 226 VAL VAL VAL GLU ASP PHE TRP GLU ALA TRP LYS ALA VAL SEQRES 9 A 226 GLN LEU LYS LYS ILE PRO VAL MSE GLY GLY THR HIS PRO SEQRES 10 A 226 GLY HIS THR THR ASP ALA VAL ALA ALA LEU LEU ALA GLU SEQRES 11 A 226 PHE LEU LYS ALA ASP LEU LEU VAL VAL ILE THR ASN VAL SEQRES 12 A 226 ASP GLY VAL TYR THR ALA ASP PRO LYS LYS ASP PRO THR SEQRES 13 A 226 ALA LYS LYS ILE LYS LYS MSE LYS PRO GLU GLU LEU LEU SEQRES 14 A 226 GLU ILE VAL GLY LYS GLY ILE GLU LYS ALA GLY SER SER SEQRES 15 A 226 SER VAL ILE ASP PRO LEU ALA ALA LYS ILE ILE ALA ARG SEQRES 16 A 226 SER GLY ILE LYS THR ILE VAL ILE GLY LYS GLU ASP ALA SEQRES 17 A 226 LYS ASP LEU PHE ARG VAL ILE LYS GLY ASP HIS ASN GLY SEQRES 18 A 226 THR THR ILE GLU PRO SEQRES 1 B 226 ALA MSE ARG ILE VAL PHE ASP ILE GLY GLY SER VAL LEU SEQRES 2 B 226 VAL PRO GLU ASN PRO ASP ILE ASP PHE ILE LYS GLU ILE SEQRES 3 B 226 ALA TYR GLN LEU THR LYS VAL SER GLU ASP HIS GLU VAL SEQRES 4 B 226 ALA VAL VAL VAL GLY GLY GLY LYS LEU ALA ARG LYS TYR SEQRES 5 B 226 ILE GLU VAL ALA GLU LYS PHE ASN SER SER GLU THR PHE SEQRES 6 B 226 LYS ASP PHE ILE GLY ILE GLN ILE THR ARG ALA ASN ALA SEQRES 7 B 226 MSE LEU LEU ILE ALA ALA LEU ARG GLU LYS ALA TYR PRO SEQRES 8 B 226 VAL VAL VAL GLU ASP PHE TRP GLU ALA TRP LYS ALA VAL SEQRES 9 B 226 GLN LEU LYS LYS ILE PRO VAL MSE GLY GLY THR HIS PRO SEQRES 10 B 226 GLY HIS THR THR ASP ALA VAL ALA ALA LEU LEU ALA GLU SEQRES 11 B 226 PHE LEU LYS ALA ASP LEU LEU VAL VAL ILE THR ASN VAL SEQRES 12 B 226 ASP GLY VAL TYR THR ALA ASP PRO LYS LYS ASP PRO THR SEQRES 13 B 226 ALA LYS LYS ILE LYS LYS MSE LYS PRO GLU GLU LEU LEU SEQRES 14 B 226 GLU ILE VAL GLY LYS GLY ILE GLU LYS ALA GLY SER SER SEQRES 15 B 226 SER VAL ILE ASP PRO LEU ALA ALA LYS ILE ILE ALA ARG SEQRES 16 B 226 SER GLY ILE LYS THR ILE VAL ILE GLY LYS GLU ASP ALA SEQRES 17 B 226 LYS ASP LEU PHE ARG VAL ILE LYS GLY ASP HIS ASN GLY SEQRES 18 B 226 THR THR ILE GLU PRO MODRES 2BMU MSE A 1 MET SELENOMETHIONINE MODRES 2BMU MSE A 78 MET SELENOMETHIONINE MODRES 2BMU MSE A 111 MET SELENOMETHIONINE MODRES 2BMU MSE A 162 MET SELENOMETHIONINE MODRES 2BMU MSE B 1 MET SELENOMETHIONINE MODRES 2BMU MSE B 78 MET SELENOMETHIONINE MODRES 2BMU MSE B 111 MET SELENOMETHIONINE MODRES 2BMU MSE B 162 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 78 8 HET MSE A 111 8 HET MSE A 162 8 HET MSE B 1 8 HET MSE B 78 8 HET MSE B 111 8 HET MSE B 162 8 HET ANP A1226 31 HET U5P A1227 21 HET MG A1228 1 HET MG A1229 1 HET MG B1229 1 HET ANP B2000 31 HET U5P B2001 21 HET MG B2002 1 HETNAM MSE SELENOMETHIONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 U5P 2(C9 H13 N2 O9 P) FORMUL 5 MG 4(MG 2+) FORMUL 11 HOH *54(H2 O) HELIX 1 1 GLY A 8 VAL A 13 1 6 HELIX 2 2 ASP A 18 GLU A 34 1 17 HELIX 3 3 GLY A 45 LYS A 57 1 13 HELIX 4 4 SER A 61 ARG A 85 1 25 HELIX 5 5 PHE A 96 LEU A 105 1 10 HELIX 6 6 THR A 119 LYS A 132 1 14 HELIX 7 7 LYS A 163 VAL A 171 1 9 HELIX 8 8 ASP A 185 SER A 195 1 11 HELIX 9 9 GLY A 203 LYS A 208 1 6 HELIX 10 10 ASP A 209 ILE A 214 1 6 HELIX 11 11 ASP B 18 GLU B 34 1 17 HELIX 12 12 GLY B 45 LYS B 57 1 13 HELIX 13 13 SER B 61 ARG B 85 1 25 HELIX 14 14 PHE B 96 LEU B 105 1 10 HELIX 15 15 THR B 119 LYS B 132 1 14 HELIX 16 16 LYS B 163 VAL B 171 1 9 HELIX 17 17 ASP B 185 SER B 195 1 11 HELIX 18 18 GLY B 203 LYS B 208 1 6 HELIX 19 19 ASP B 209 ILE B 214 1 6 SHEET 1 AA 8 VAL A 92 VAL A 93 0 SHEET 2 AA 8 PRO A 109 MSE A 111 1 O VAL A 110 N VAL A 93 SHEET 3 AA 8 GLU A 37 VAL A 42 1 N VAL A 40 O PRO A 109 SHEET 4 AA 8 MSE A 1 ILE A 7 1 O MSE A 1 N GLU A 37 SHEET 5 AA 8 LEU A 135 ILE A 139 1 N LEU A 135 O ARG A 2 SHEET 6 AA 8 LYS A 198 ILE A 202 1 O LYS A 198 N LEU A 136 SHEET 7 AA 8 THR A 221 ILE A 223 -1 N THR A 221 O VAL A 201 SHEET 8 AA 8 LYS A 160 MSE A 162 1 O LYS A 160 N THR A 222 SHEET 1 AB 2 VAL A 145 TYR A 146 0 SHEET 2 AB 2 LYS A 157 ILE A 159 -1 N ILE A 159 O VAL A 145 SHEET 1 BA 8 VAL B 92 VAL B 93 0 SHEET 2 BA 8 VAL B 110 MSE B 111 1 O VAL B 110 N VAL B 93 SHEET 3 BA 8 GLU B 37 VAL B 42 1 N VAL B 40 O PRO B 109 SHEET 4 BA 8 MSE B 1 ILE B 7 1 O MSE B 1 N GLU B 37 SHEET 5 BA 8 LEU B 135 ILE B 139 1 N LEU B 135 O ARG B 2 SHEET 6 BA 8 LYS B 198 ILE B 202 1 O LYS B 198 N LEU B 136 SHEET 7 BA 8 THR B 221 ILE B 223 -1 N THR B 221 O VAL B 201 SHEET 8 BA 8 LYS B 160 MSE B 162 1 O LYS B 160 N THR B 222 SHEET 1 BB 2 VAL B 145 TYR B 146 0 SHEET 2 BB 2 LYS B 157 ILE B 159 -1 N ILE B 159 O VAL B 145 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ALA A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N LEU A 79 1555 1555 1.33 LINK C VAL A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N GLY A 112 1555 1555 1.33 LINK C LYS A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N LYS A 163 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C ALA B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N LEU B 79 1555 1555 1.33 LINK C VAL B 110 N MSE B 111 1555 1555 1.32 LINK C MSE B 111 N GLY B 112 1555 1555 1.33 LINK C LYS B 161 N MSE B 162 1555 1555 1.33 LINK C MSE B 162 N LYS B 163 1555 1555 1.33 LINK OD1 ASP A 6 MG MG A1228 1555 1555 2.49 LINK OG1 THR A 120 MG MG A1228 1555 1555 2.69 LINK OD1 ASP A 121 MG MG A1229 1555 1555 2.50 LINK O SER A 182 MG MG A1229 1555 1555 2.32 LINK O1B ANP A1226 MG MG A1229 1555 1555 2.76 LINK OD2 ASP B 121 MG MG B2002 1555 1555 2.60 LINK O SER B 182 MG MG B2002 1555 1555 2.57 LINK MG MG B1229 O1G ANP B2000 1555 1555 2.75 LINK MG MG B1229 O HOH B2023 1555 1555 2.55 LINK O1B ANP B2000 MG MG B2002 1555 1555 2.52 SITE 1 AC1 5 ASP A 6 THR A 120 ASP A 121 ANP A1226 SITE 2 AC1 5 HOH A2001 SITE 1 AC2 3 ASP A 121 SER A 182 ANP A1226 SITE 1 AC3 5 ASP B 6 THR B 120 ASP B 121 ANP B2000 SITE 2 AC3 5 HOH B2023 SITE 1 AC4 4 ASP B 121 SER B 182 VAL B 183 ANP B2000 SITE 1 AC5 24 GLY A 8 GLY A 9 SER A 10 GLY A 43 SITE 2 AC5 24 GLY A 44 GLY A 45 ARG A 49 THR A 120 SITE 3 AC5 24 THR A 140 ASN A 141 VAL A 142 GLY A 144 SITE 4 AC5 24 TYR A 146 ALA A 148 ASP A 149 PRO A 150 SITE 5 AC5 24 LYS A 151 SER A 181 SER A 182 VAL A 183 SITE 6 AC5 24 U5P A1227 MG A1228 MG A1229 HOH A2033 SITE 1 AC6 17 GLY A 44 GLY A 45 ASP A 66 GLY A 69 SITE 2 AC6 17 ILE A 70 GLY A 113 THR A 114 HIS A 115 SITE 3 AC6 17 PRO A 116 HIS A 118 THR A 119 THR A 120 SITE 4 AC6 17 VAL A 123 ALA A 178 GLY A 179 ANP A1226 SITE 5 AC6 17 HOH A2033 SITE 1 AC7 23 GLY B 8 GLY B 9 SER B 10 GLY B 43 SITE 2 AC7 23 GLY B 44 GLY B 45 THR B 120 THR B 140 SITE 3 AC7 23 ASN B 141 VAL B 142 GLY B 144 VAL B 145 SITE 4 AC7 23 TYR B 146 ALA B 148 ASP B 149 PRO B 150 SITE 5 AC7 23 SER B 181 SER B 182 VAL B 183 MG B1229 SITE 6 AC7 23 U5P B2001 MG B2002 HOH B2021 SITE 1 AC8 18 GLY B 43 GLY B 44 GLY B 45 ASP B 66 SITE 2 AC8 18 GLY B 69 ILE B 70 GLY B 113 THR B 114 SITE 3 AC8 18 HIS B 115 PRO B 116 HIS B 118 THR B 119 SITE 4 AC8 18 THR B 120 VAL B 123 ALA B 178 GLY B 179 SITE 5 AC8 18 SER B 180 ANP B2000 CRYST1 144.564 144.564 144.564 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006917 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006917 0.00000 MTRIX1 1 0.302910 -0.837570 0.454660 128.52126 1 MTRIX2 1 -0.841510 -0.459000 -0.284910 237.92346 1 MTRIX3 1 0.447320 -0.296300 -0.843870 71.70589 1 HETATM 1 N MSE A 1 71.146 77.680 48.993 1.00 44.57 N HETATM 2 CA MSE A 1 71.409 78.192 47.615 1.00 43.76 C HETATM 3 C MSE A 1 72.311 79.416 47.576 1.00 39.51 C HETATM 4 O MSE A 1 72.317 80.233 48.494 1.00 37.52 O HETATM 5 CB MSE A 1 70.097 78.543 46.907 1.00 48.59 C HETATM 6 CG MSE A 1 69.407 77.385 46.221 1.00 55.89 C HETATM 7 SE MSE A 1 67.939 78.023 45.138 1.00 73.55 SE HETATM 8 CE MSE A 1 68.752 77.928 43.386 1.00 64.35 C