HEADER STRUCTURAL PROTEIN 05-APR-05 2BNX TITLE CRYSTAL STRUCTURE OF THE DIMERIC REGULATORY DOMAIN OF MOUSE TITLE 2 DIAPHANEOUS-RELATED FORMIN (DRF), MDIA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAPHANOUS PROTEIN HOMOLOG 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN, RESIDUES 131-516; COMPND 5 SYNONYM: DIAPHANOUS-RELATED FORMIN 1, DRF1, MDIA1, P140MDIA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS AUTOINHIBITION, ACTIN, NUCLEATION, CYTOSKELETON, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.OTOMO,C.OTOMO,D.R.TOMCHICK,M.MACHIUS,M.K.ROSEN REVDAT 4 08-MAY-19 2BNX 1 REMARK REVDAT 3 13-JUL-11 2BNX 1 VERSN REVDAT 2 24-FEB-09 2BNX 1 VERSN REVDAT 1 13-JUN-05 2BNX 0 JRNL AUTH T.OTOMO,C.OTOMO,D.R.TOMCHICK,M.MACHIUS,M.K.ROSEN JRNL TITL STRUCTURAL BASIS OF RHO GTPASE-MEDIATED ACTIVATION OF THE JRNL TITL 2 FORMIN MDIA1 JRNL REF MOL.CELL V. 18 273 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15866170 JRNL DOI 10.1016/J.MOLCEL.2005.04.002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : 55.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89000 REMARK 3 B22 (A**2) : 2.89000 REMARK 3 B33 (A**2) : -4.33000 REMARK 3 B12 (A**2) : 1.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5513 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7428 ; 1.749 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;38.362 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1074 ;18.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;21.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4110 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2586 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3801 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3526 ; 0.876 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5474 ; 1.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2210 ; 2.437 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1954 ; 3.774 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8801 61.9503 70.1327 REMARK 3 T TENSOR REMARK 3 T11: -.0355 T22: -.0468 REMARK 3 T33: -.1008 T12: .0504 REMARK 3 T13: -.0098 T23: .0133 REMARK 3 L TENSOR REMARK 3 L11: .1984 L22: 1.4069 REMARK 3 L33: 4.2677 L12: -.0513 REMARK 3 L13: .2031 L23: 1.2675 REMARK 3 S TENSOR REMARK 3 S11: -.0469 S12: -.1299 S13: -.0208 REMARK 3 S21: -.0673 S22: .1181 S23: -.0914 REMARK 3 S31: .3776 S32: .4327 S33: -.0711 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 381 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6866 34.6997 38.8424 REMARK 3 T TENSOR REMARK 3 T11: .1097 T22: -.3711 REMARK 3 T33: -.2146 T12: .0363 REMARK 3 T13: .0009 T23: .0169 REMARK 3 L TENSOR REMARK 3 L11: 1.5859 L22: 5.4266 REMARK 3 L33: 3.4690 L12: -.0549 REMARK 3 L13: .1991 L23: .3503 REMARK 3 S TENSOR REMARK 3 S11: -.0332 S12: .0731 S13: .0171 REMARK 3 S21: -.5773 S22: .0224 S23: -.1548 REMARK 3 S31: -.3220 S32: .1022 S33: .0107 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 445 A 474 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4264 36.8081 32.2589 REMARK 3 T TENSOR REMARK 3 T11: -.0078 T22: -.0011 REMARK 3 T33: -.0185 T12: .0181 REMARK 3 T13: -.0261 T23: .0404 REMARK 3 L TENSOR REMARK 3 L11: 11.3867 L22: 5.9138 REMARK 3 L33: 44.0766 L12: .8348 REMARK 3 L13: 20.3738 L23: .6063 REMARK 3 S TENSOR REMARK 3 S11: -.7347 S12: -.6130 S13: .3401 REMARK 3 S21: -.7795 S22: .4912 S23: .6480 REMARK 3 S31: -.8845 S32: -2.8188 S33: .2435 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 370 REMARK 3 ORIGIN FOR THE GROUP (A): -.4430 9.1252 60.3576 REMARK 3 T TENSOR REMARK 3 T11: -.1416 T22: -.1483 REMARK 3 T33: -.1314 T12: .1011 REMARK 3 T13: -.0247 T23: -.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.0589 L22: 1.9869 REMARK 3 L33: 3.4910 L12: -.0095 REMARK 3 L13: -.2177 L23: -1.1765 REMARK 3 S TENSOR REMARK 3 S11: -.0346 S12: -.1613 S13: .0023 REMARK 3 S21: .0217 S22: .0693 S23: .0968 REMARK 3 S31: -.1881 S32: -.3002 S33: -.0346 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 371 B 444 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2495 31.6581 38.3441 REMARK 3 T TENSOR REMARK 3 T11: .1466 T22: -.2715 REMARK 3 T33: -.1508 T12: .1129 REMARK 3 T13: -.0093 T23: -.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.9330 L22: 4.7204 REMARK 3 L33: 1.7391 L12: 1.1519 REMARK 3 L13: .1042 L23: -.7933 REMARK 3 S TENSOR REMARK 3 S11: -.1125 S12: .1598 S13: -.0746 REMARK 3 S21: -.6375 S22: .0708 S23: -.2605 REMARK 3 S31: -.1111 S32: .0746 S33: .0417 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 445 B 477 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2425 33.9513 28.9427 REMARK 3 T TENSOR REMARK 3 T11: .1968 T22: -.1346 REMARK 3 T33: .0704 T12: .0222 REMARK 3 T13: -.3452 T23: .1226 REMARK 3 L TENSOR REMARK 3 L11: 3.7688 L22: 7.0412 REMARK 3 L33: 22.2912 L12: -.7996 REMARK 3 L13: 5.6741 L23: -8.0910 REMARK 3 S TENSOR REMARK 3 S11: -.4871 S12: .1970 S13: .3059 REMARK 3 S21: -1.0520 S22: .9001 S23: 1.1321 REMARK 3 S31: .0855 S32: -1.3521 S33: -.4130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 470 THROUGH 474 IN CHAIN A WERE MODELED AS REMARK 3 ALANINES. BECAUSE SEQUENCE ASSIGNMENT WAS AMBIGUOUS DUE TO THE REMARK 3 WEAK ELECTRON DENSITY IN THIS REGION REMARK 4 REMARK 4 2BNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00691 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION; PROTEIN: REMARK 280 11 MG/ML IN 100 MM HEPES, PH 7.25; RESERVOIR: 100 MM HEPES, PH REMARK 280 7.25, 9% PEG3350, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.39733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.69867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 BINDS TO GTP-BOUND FORM OF RHO AND TO PROFILIN. ACTS IN REMARK 400 A RHO-DEPENDENT MANNER TO RECRUIT PROFILIN TO THE MEMBRANE, WHERE REMARK 400 IT PROMOTES ACTIN POLYMERIZATION. IT IS REQUIRED FOR CYTOKINESIS, REMARK 400 STRESS FIBER FORMATION, AND TRANSCRIPTIONAL ACTIVATION OF THE REMARK 400 SERUM RESPONSE FACTOR. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 131 REMARK 465 SER A 132 REMARK 465 ASP A 457 REMARK 465 GLN A 458 REMARK 465 MET A 459 REMARK 465 ILE A 460 REMARK 465 ASP A 461 REMARK 465 GLU A 476 REMARK 465 LYS A 477 REMARK 465 LYS A 478 REMARK 465 LEU A 479 REMARK 465 ASP A 480 REMARK 465 SER A 481 REMARK 465 GLU A 482 REMARK 465 LEU A 483 REMARK 465 THR A 484 REMARK 465 ALA A 485 REMARK 465 ARG A 486 REMARK 465 HIS A 487 REMARK 465 GLU A 488 REMARK 465 LEU A 489 REMARK 465 GLN A 490 REMARK 465 VAL A 491 REMARK 465 GLU A 492 REMARK 465 MET A 493 REMARK 465 LYS A 494 REMARK 465 LYS A 495 REMARK 465 MET A 496 REMARK 465 GLU A 497 REMARK 465 ASN A 498 REMARK 465 ASP A 499 REMARK 465 PHE A 500 REMARK 465 GLU A 501 REMARK 465 GLN A 502 REMARK 465 LYS A 503 REMARK 465 LEU A 504 REMARK 465 GLN A 505 REMARK 465 ASP A 506 REMARK 465 LEU A 507 REMARK 465 GLN A 508 REMARK 465 GLY A 509 REMARK 465 GLU A 510 REMARK 465 LYS A 511 REMARK 465 ASP A 512 REMARK 465 ALA A 513 REMARK 465 LEU A 514 REMARK 465 ASP A 515 REMARK 465 SER A 516 REMARK 465 GLU B 131 REMARK 465 SER B 132 REMARK 465 ASP B 373 REMARK 465 ILE B 374 REMARK 465 ARG B 375 REMARK 465 LEU B 475 REMARK 465 GLU B 476 REMARK 465 LYS B 477 REMARK 465 LYS B 478 REMARK 465 LEU B 479 REMARK 465 ASP B 480 REMARK 465 SER B 481 REMARK 465 GLU B 482 REMARK 465 LEU B 483 REMARK 465 THR B 484 REMARK 465 ALA B 485 REMARK 465 ARG B 486 REMARK 465 HIS B 487 REMARK 465 GLU B 488 REMARK 465 LEU B 489 REMARK 465 GLN B 490 REMARK 465 VAL B 491 REMARK 465 GLU B 492 REMARK 465 MET B 493 REMARK 465 LYS B 494 REMARK 465 LYS B 495 REMARK 465 MET B 496 REMARK 465 GLU B 497 REMARK 465 ASN B 498 REMARK 465 ASP B 499 REMARK 465 PHE B 500 REMARK 465 GLU B 501 REMARK 465 GLN B 502 REMARK 465 LYS B 503 REMARK 465 LEU B 504 REMARK 465 GLN B 505 REMARK 465 ASP B 506 REMARK 465 LEU B 507 REMARK 465 GLN B 508 REMARK 465 GLY B 509 REMARK 465 GLU B 510 REMARK 465 LYS B 511 REMARK 465 ASP B 512 REMARK 465 ALA B 513 REMARK 465 LEU B 514 REMARK 465 ASP B 515 REMARK 465 SER B 516 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 THR A 463 OG1 CG2 REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 VAL A 465 CG1 CG2 REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 THR A 473 OG1 CG2 REMARK 470 GLU A 474 CG CD OE1 OE2 REMARK 470 LEU A 475 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 453 CG GLU A 453 CD 0.288 REMARK 500 GLU A 453 CD GLU A 453 OE1 0.114 REMARK 500 GLU A 453 CD GLU A 453 OE2 0.135 REMARK 500 LYS A 462 N LYS A 462 CA 0.393 REMARK 500 LYS A 462 CA LYS A 462 CB 0.168 REMARK 500 THR A 473 C GLU A 474 N 0.139 REMARK 500 GLU B 466 CG GLU B 466 CD 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP A 414 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 326 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 410 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG B 412 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 418 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 149 -128.66 52.01 REMARK 500 ASN A 217 47.09 -78.25 REMARK 500 ASN A 218 165.80 176.01 REMARK 500 ASP A 265 58.40 -119.90 REMARK 500 ARG A 412 104.56 -11.06 REMARK 500 ARG A 412 104.56 132.75 REMARK 500 LEU A 434 68.07 -111.15 REMARK 500 LYS A 471 31.76 -70.55 REMARK 500 GLU A 474 -92.52 173.23 REMARK 500 SER B 145 -164.44 -78.92 REMARK 500 ASP B 149 -133.67 56.08 REMARK 500 ASN B 217 28.91 -79.18 REMARK 500 VAL B 243 74.71 -118.79 REMARK 500 ARG B 412 123.78 -32.63 REMARK 500 CYS B 445 70.28 -115.59 REMARK 500 ARG B 446 31.32 -140.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V9D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CORE FH2 DOMAIN OF MOUSE MDIA1 DBREF 2BNX A 131 516 UNP O08808 DIAP1_MOUSE 131 516 DBREF 2BNX B 131 516 UNP O08808 DIAP1_MOUSE 131 516 SEQRES 1 A 386 GLU SER SER ARG SER ALA MET MET TYR ILE GLN GLU LEU SEQRES 2 A 386 ARG SER GLY LEU ARG ASP MET HIS LEU LEU SER CYS LEU SEQRES 3 A 386 GLU SER LEU ARG VAL SER LEU ASN ASN ASN PRO VAL SER SEQRES 4 A 386 TRP VAL GLN THR PHE GLY ALA GLU GLY LEU ALA SER LEU SEQRES 5 A 386 LEU ASP ILE LEU LYS ARG LEU HIS ASP GLU LYS GLU GLU SEQRES 6 A 386 THR SER GLY ASN TYR ASP SER ARG ASN GLN HIS GLU ILE SEQRES 7 A 386 ILE ARG CYS LEU LYS ALA PHE MET ASN ASN LYS PHE GLY SEQRES 8 A 386 ILE LYS THR MET LEU GLU THR GLU GLU GLY ILE LEU LEU SEQRES 9 A 386 LEU VAL ARG ALA MET ASP PRO ALA VAL PRO ASN MET MET SEQRES 10 A 386 ILE ASP ALA ALA LYS LEU LEU SER ALA LEU CYS ILE LEU SEQRES 11 A 386 PRO GLN PRO GLU ASP MET ASN GLU ARG VAL LEU GLU ALA SEQRES 12 A 386 MET THR GLU ARG ALA GLU MET ASP GLU VAL GLU ARG PHE SEQRES 13 A 386 GLN PRO LEU LEU ASP GLY LEU LYS SER GLY THR SER ILE SEQRES 14 A 386 ALA LEU LYS VAL GLY CYS LEU GLN LEU ILE ASN ALA LEU SEQRES 15 A 386 ILE THR PRO ALA GLU GLU LEU ASP PHE ARG VAL HIS ILE SEQRES 16 A 386 ARG SER GLU LEU MET ARG LEU GLY LEU HIS GLN VAL LEU SEQRES 17 A 386 GLN GLU LEU ARG GLU ILE GLU ASN GLU ASP MET LYS VAL SEQRES 18 A 386 GLN LEU CYS VAL PHE ASP GLU GLN GLY ASP GLU ASP PHE SEQRES 19 A 386 PHE ASP LEU LYS GLY ARG LEU ASP ASP ILE ARG MET GLU SEQRES 20 A 386 MET ASP ASP PHE GLY GLU VAL PHE GLN ILE ILE LEU ASN SEQRES 21 A 386 THR VAL LYS ASP SER LYS ALA GLU PRO HIS PHE LEU SER SEQRES 22 A 386 ILE LEU GLN HIS LEU LEU LEU VAL ARG ASN ASP TYR GLU SEQRES 23 A 386 ALA ARG PRO GLN TYR TYR LYS LEU ILE GLU GLU CYS VAL SEQRES 24 A 386 SER GLN ILE VAL LEU HIS LYS ASN GLY THR ASP PRO ASP SEQRES 25 A 386 PHE LYS CYS ARG HIS LEU GLN ILE ASP ILE GLU ARG LEU SEQRES 26 A 386 VAL ASP GLN MET ILE ASP LYS THR LYS VAL GLU LYS SER SEQRES 27 A 386 GLU ALA LYS ALA THR GLU LEU GLU LYS LYS LEU ASP SER SEQRES 28 A 386 GLU LEU THR ALA ARG HIS GLU LEU GLN VAL GLU MET LYS SEQRES 29 A 386 LYS MET GLU ASN ASP PHE GLU GLN LYS LEU GLN ASP LEU SEQRES 30 A 386 GLN GLY GLU LYS ASP ALA LEU ASP SER SEQRES 1 B 386 GLU SER SER ARG SER ALA MET MET TYR ILE GLN GLU LEU SEQRES 2 B 386 ARG SER GLY LEU ARG ASP MET HIS LEU LEU SER CYS LEU SEQRES 3 B 386 GLU SER LEU ARG VAL SER LEU ASN ASN ASN PRO VAL SER SEQRES 4 B 386 TRP VAL GLN THR PHE GLY ALA GLU GLY LEU ALA SER LEU SEQRES 5 B 386 LEU ASP ILE LEU LYS ARG LEU HIS ASP GLU LYS GLU GLU SEQRES 6 B 386 THR SER GLY ASN TYR ASP SER ARG ASN GLN HIS GLU ILE SEQRES 7 B 386 ILE ARG CYS LEU LYS ALA PHE MET ASN ASN LYS PHE GLY SEQRES 8 B 386 ILE LYS THR MET LEU GLU THR GLU GLU GLY ILE LEU LEU SEQRES 9 B 386 LEU VAL ARG ALA MET ASP PRO ALA VAL PRO ASN MET MET SEQRES 10 B 386 ILE ASP ALA ALA LYS LEU LEU SER ALA LEU CYS ILE LEU SEQRES 11 B 386 PRO GLN PRO GLU ASP MET ASN GLU ARG VAL LEU GLU ALA SEQRES 12 B 386 MET THR GLU ARG ALA GLU MET ASP GLU VAL GLU ARG PHE SEQRES 13 B 386 GLN PRO LEU LEU ASP GLY LEU LYS SER GLY THR SER ILE SEQRES 14 B 386 ALA LEU LYS VAL GLY CYS LEU GLN LEU ILE ASN ALA LEU SEQRES 15 B 386 ILE THR PRO ALA GLU GLU LEU ASP PHE ARG VAL HIS ILE SEQRES 16 B 386 ARG SER GLU LEU MET ARG LEU GLY LEU HIS GLN VAL LEU SEQRES 17 B 386 GLN GLU LEU ARG GLU ILE GLU ASN GLU ASP MET LYS VAL SEQRES 18 B 386 GLN LEU CYS VAL PHE ASP GLU GLN GLY ASP GLU ASP PHE SEQRES 19 B 386 PHE ASP LEU LYS GLY ARG LEU ASP ASP ILE ARG MET GLU SEQRES 20 B 386 MET ASP ASP PHE GLY GLU VAL PHE GLN ILE ILE LEU ASN SEQRES 21 B 386 THR VAL LYS ASP SER LYS ALA GLU PRO HIS PHE LEU SER SEQRES 22 B 386 ILE LEU GLN HIS LEU LEU LEU VAL ARG ASN ASP TYR GLU SEQRES 23 B 386 ALA ARG PRO GLN TYR TYR LYS LEU ILE GLU GLU CYS VAL SEQRES 24 B 386 SER GLN ILE VAL LEU HIS LYS ASN GLY THR ASP PRO ASP SEQRES 25 B 386 PHE LYS CYS ARG HIS LEU GLN ILE ASP ILE GLU ARG LEU SEQRES 26 B 386 VAL ASP GLN MET ILE ASP LYS THR LYS VAL GLU LYS SER SEQRES 27 B 386 GLU ALA LYS ALA THR GLU LEU GLU LYS LYS LEU ASP SER SEQRES 28 B 386 GLU LEU THR ALA ARG HIS GLU LEU GLN VAL GLU MET LYS SEQRES 29 B 386 LYS MET GLU ASN ASP PHE GLU GLN LYS LEU GLN ASP LEU SEQRES 30 B 386 GLN GLY GLU LYS ASP ALA LEU ASP SER HET CL A1500 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *249(H2 O) HELIX 1 1 SER A 135 ARG A 144 1 10 HELIX 2 2 ARG A 148 ASN A 166 1 19 HELIX 3 3 PRO A 167 ASP A 191 1 25 HELIX 4 4 TYR A 200 MET A 216 1 17 HELIX 5 5 ASN A 218 THR A 228 1 11 HELIX 6 6 GLU A 230 ALA A 238 1 9 HELIX 7 7 VAL A 243 ILE A 259 1 17 HELIX 8 8 ASP A 265 GLU A 282 1 18 HELIX 9 9 PHE A 286 LEU A 293 1 8 HELIX 10 10 SER A 298 THR A 314 1 17 HELIX 11 11 GLU A 318 LEU A 332 1 15 HELIX 12 12 GLY A 333 ARG A 342 1 10 HELIX 13 13 ASN A 346 MET A 378 1 33 HELIX 14 14 ASP A 380 LYS A 393 1 14 HELIX 15 15 LYS A 396 LEU A 409 1 14 HELIX 16 16 ALA A 417 LEU A 434 1 18 HELIX 17 17 HIS A 435 THR A 439 5 5 HELIX 18 18 THR A 463 ALA A 470 1 8 HELIX 19 19 SER B 135 ARG B 144 1 10 HELIX 20 20 ARG B 148 ASN B 166 1 19 HELIX 21 21 PRO B 167 GLU B 192 1 26 HELIX 22 22 LYS B 193 SER B 197 5 5 HELIX 23 23 TYR B 200 MET B 216 1 17 HELIX 24 24 ASN B 218 GLU B 227 1 10 HELIX 25 25 GLU B 230 ALA B 238 1 9 HELIX 26 26 VAL B 243 LEU B 260 1 18 HELIX 27 27 ASP B 265 GLU B 282 1 18 HELIX 28 28 PHE B 286 LYS B 294 1 9 HELIX 29 29 SER B 298 THR B 314 1 17 HELIX 30 30 GLU B 318 LEU B 332 1 15 HELIX 31 31 GLY B 333 ARG B 342 1 10 HELIX 32 32 ASN B 346 ASP B 372 1 27 HELIX 33 33 ASP B 380 LYS B 393 1 14 HELIX 34 34 LYS B 396 LEU B 409 1 14 HELIX 35 35 GLU B 416 HIS B 435 1 20 HELIX 36 36 ASP B 451 GLU B 474 1 24 CISPEP 1 GLN A 262 PRO A 263 0 -8.57 CISPEP 2 GLN B 262 PRO B 263 0 -5.81 CRYST1 121.365 121.365 95.096 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008240 0.004757 0.000000 0.00000 SCALE2 0.000000 0.009514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010516 0.00000