HEADER CHAPERONE 21-MAY-05 2BSH TITLE CRYSTAL STRUCTURE OF THE TYPE III SECRETION CHAPERONE SYCT FROM TITLE 2 YERSINIA ENTEROCOLITICA (CRYSTAL FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYCT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 STRAIN: W22703; SOURCE 5 VARIANT: SEROTYPE O\:9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-M-30; SOURCE 10 OTHER_DETAILS: YERSINIA ENTEROCOLITICA VIRULENCE PLASMID PYVE227 KEYWDS TYPE III SECRETION, YERSINIA, CHAPERONE, EFFECTOR, YOPT EXPDTA X-RAY DIFFRACTION AUTHOR C.R.BUTTNER,G.R.CORNELIS,D.W.HEINZ,H.H.NIEMANN REVDAT 4 27-FEB-19 2BSH 1 JRNL REMARK LINK REVDAT 3 13-JUL-11 2BSH 1 VERSN REVDAT 2 24-FEB-09 2BSH 1 VERSN REVDAT 1 15-AUG-05 2BSH 0 JRNL AUTH C.R.BUTTNER,G.R.CORNELIS,D.W.HEINZ,H.H.NIEMANN JRNL TITL CRYSTAL STRUCTURE OF YERSINIA ENTEROCOLITICA TYPE III JRNL TITL 2 SECRETION CHAPERONE SYCT. JRNL REF PROTEIN SCI. V. 14 1993 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 16046625 JRNL DOI 10.1110/PS.051474605 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1988 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2700 ; 1.875 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 7.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;38.971 ;25.948 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;13.936 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1561 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 939 ; 0.251 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1363 ; 0.323 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.184 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.232 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.172 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 2.289 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1884 ; 3.388 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 907 ; 2.751 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 816 ; 3.646 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6202 13.8417 -2.1721 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0183 REMARK 3 T33: 0.0484 T12: -0.0262 REMARK 3 T13: 0.0349 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 4.7273 L22: 3.3314 REMARK 3 L33: 2.3421 L12: -0.4534 REMARK 3 L13: 0.3749 L23: -0.8756 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: 0.1269 S13: -0.0777 REMARK 3 S21: 0.1384 S22: -0.1378 S23: 0.0480 REMARK 3 S31: -0.0691 S32: 0.0120 S33: 0.0899 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 55.7466 16.6612 3.4244 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.0834 REMARK 3 T33: 0.0383 T12: -0.0644 REMARK 3 T13: 0.0258 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 15.5612 L22: 1.4857 REMARK 3 L33: 1.6413 L12: -0.1075 REMARK 3 L13: 0.4677 L23: -0.3130 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.5860 S13: -0.4779 REMARK 3 S21: 0.2421 S22: -0.0035 S23: 0.0968 REMARK 3 S31: -0.1572 S32: 0.1214 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 81.1229 21.3229 -11.3036 REMARK 3 T TENSOR REMARK 3 T11: -0.0430 T22: 0.1521 REMARK 3 T33: 0.1789 T12: -0.0598 REMARK 3 T13: 0.0889 T23: 0.1309 REMARK 3 L TENSOR REMARK 3 L11: 6.2261 L22: 2.3028 REMARK 3 L33: 2.6402 L12: 1.6489 REMARK 3 L13: -0.5561 L23: -1.8057 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: -0.7161 S13: -0.4237 REMARK 3 S21: -0.2350 S22: -0.4118 S23: -0.6488 REMARK 3 S31: -0.2965 S32: 0.3377 S33: 0.3252 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 62.4178 12.8547 -9.0314 REMARK 3 T TENSOR REMARK 3 T11: 0.0186 T22: 0.0049 REMARK 3 T33: 0.0060 T12: -0.0119 REMARK 3 T13: 0.0294 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.6382 L22: 3.8104 REMARK 3 L33: 2.1924 L12: 1.1483 REMARK 3 L13: -1.2419 L23: -1.3787 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.0070 S13: -0.1338 REMARK 3 S21: 0.0021 S22: -0.1313 S23: -0.1047 REMARK 3 S31: 0.0298 S32: -0.0224 S33: 0.1052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1290023476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 79.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : 0.07000 REMARK 200 FOR SHELL : 5.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, CDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 BICARBONATE PH 10.5, 50 MM MAGNESIUM CHLORIDE HANGING-DROP VAPOR REMARK 280 DIFFUSION AT 4 CELSIUS DEGREE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.91333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.45667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.91333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.45667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 IT IS A SPECIFIC CHAPERONE FOR YOPT REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MSE A 0 REMARK 465 GLY A 1 REMARK 465 GLN A 2 REMARK 465 GLN B 115 REMARK 465 ASN B 116 REMARK 465 THR B 117 REMARK 465 LYS B 118 REMARK 465 PHE B 119 REMARK 465 GLN B 120 REMARK 465 PRO B 121 REMARK 465 ASN B 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 114 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 24 CD GLU A 24 OE1 0.100 REMARK 500 GLU A 24 CD GLU A 24 OE2 0.121 REMARK 500 ASP A 57 CG ASP A 57 OD2 0.174 REMARK 500 TRP A 84 CB TRP A 84 CG 0.109 REMARK 500 GLU B 96 CG GLU B 96 CD 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 4 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -73.86 -66.64 REMARK 500 ASP A 33 27.50 31.31 REMARK 500 GLN A 45 17.47 59.68 REMARK 500 GLN A 46 -35.30 -144.99 REMARK 500 GLN A 120 -37.21 174.51 REMARK 500 ASP B 26 30.07 72.61 REMARK 500 GLN B 46 -23.14 -140.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 119 GLN A 120 141.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: SECONDARY STRUCTURE ASSIGNED BY STRIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BHO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION REMARK 900 CHAPERONE SYCT REMARK 900 RELATED ID: 2BSI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION REMARK 900 CHAPERONE SYCT (CRYSTAL FORM 1) REMARK 900 RELATED ID: 2BSJ RELATED DB: PDB REMARK 900 NATIVE CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III REMARK 900 SECRETION CHAPERONE SYCT DBREF 2BSH A -2 1 PDB 2BSH 2BSH -2 1 DBREF 2BSH A 2 122 UNP O85243 SYCT_YEREN 2 122 DBREF 2BSH B -2 1 PDB 2BSH 2BSH -2 1 DBREF 2BSH B 2 122 UNP O85243 SYCT_YEREN 2 122 SEQRES 1 A 125 GLY ALA MSE GLY GLN THR THR PHE THR GLU LEU MSE GLN SEQRES 2 A 125 GLN LEU PHE LEU LYS LEU GLY LEU ASN HIS GLN VAL ASN SEQRES 3 A 125 GLU ASN ASP VAL TYR THR PHE GLU VAL ASP GLY HIS ILE SEQRES 4 A 125 GLN VAL LEU ILE ALA CYS TYR HIS GLN GLN TRP VAL GLN SEQRES 5 A 125 LEU PHE SER GLU LEU GLY ALA ASP LEU PRO THR ASN ASP SEQRES 6 A 125 ASN LEU PHE GLY GLU HIS TRP PRO ALA HIS VAL GLN GLY SEQRES 7 A 125 ARG LEU ASP GLY LYS SER ILE LEU TRP SER GLN GLN SER SEQRES 8 A 125 LEU VAL GLY LEU ASP ILE ASP GLU MSE GLN ALA TRP LEU SEQRES 9 A 125 GLU ARG PHE ILE ASP ASP ILE GLU GLN ARG LYS GLU PRO SEQRES 10 A 125 GLN ASN THR LYS PHE GLN PRO ASN SEQRES 1 B 125 GLY ALA MSE GLY GLN THR THR PHE THR GLU LEU MSE GLN SEQRES 2 B 125 GLN LEU PHE LEU LYS LEU GLY LEU ASN HIS GLN VAL ASN SEQRES 3 B 125 GLU ASN ASP VAL TYR THR PHE GLU VAL ASP GLY HIS ILE SEQRES 4 B 125 GLN VAL LEU ILE ALA CYS TYR HIS GLN GLN TRP VAL GLN SEQRES 5 B 125 LEU PHE SER GLU LEU GLY ALA ASP LEU PRO THR ASN ASP SEQRES 6 B 125 ASN LEU PHE GLY GLU HIS TRP PRO ALA HIS VAL GLN GLY SEQRES 7 B 125 ARG LEU ASP GLY LYS SER ILE LEU TRP SER GLN GLN SER SEQRES 8 B 125 LEU VAL GLY LEU ASP ILE ASP GLU MSE GLN ALA TRP LEU SEQRES 9 B 125 GLU ARG PHE ILE ASP ASP ILE GLU GLN ARG LYS GLU PRO SEQRES 10 B 125 GLN ASN THR LYS PHE GLN PRO ASN MODRES 2BSH MSE A 9 MET SELENOMETHIONINE MODRES 2BSH MSE A 97 MET SELENOMETHIONINE MODRES 2BSH MSE B 0 MET SELENOMETHIONINE MODRES 2BSH MSE B 9 MET SELENOMETHIONINE MODRES 2BSH MSE B 97 MET SELENOMETHIONINE HET MSE A 9 8 HET MSE A 97 8 HET MSE B 0 8 HET MSE B 9 8 HET MSE B 97 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 HOH *139(H2 O) HELIX 1 1 THR A 3 LEU A 16 1 14 HELIX 2 2 ILE A 94 LYS A 112 1 19 HELIX 3 3 ALA B -1 LEU B 16 1 18 HELIX 4 4 ILE B 94 LYS B 112 1 19 SHEET 1 AA 6 GLN A 21 ASN A 23 0 SHEET 2 AA 6 VAL A 27 VAL A 32 -1 O VAL A 27 N ASN A 23 SHEET 3 AA 6 ILE A 36 TYR A 43 -1 O ILE A 36 N VAL A 32 SHEET 4 AA 6 TRP A 47 GLY A 55 -1 O TRP A 47 N TYR A 43 SHEET 5 AA 6 HIS A 72 LEU A 77 -1 O VAL A 73 N TRP A 84 SHEET 6 AA 6 LYS A 80 SER A 88 -1 O SER A 81 N LEU A 54 SHEET 1 BA 6 GLN B 21 VAL B 22 0 SHEET 2 BA 6 VAL B 27 VAL B 32 -1 O THR B 29 N GLN B 21 SHEET 3 BA 6 ILE B 36 TYR B 43 -1 O ILE B 36 N VAL B 32 SHEET 4 BA 6 TRP B 47 ALA B 56 -1 O TRP B 47 N TYR B 43 SHEET 5 BA 6 VAL B 73 LEU B 77 -1 O VAL B 73 N TRP B 84 SHEET 6 BA 6 LYS B 80 SER B 88 -1 O LEU B 83 N SER B 52 LINK C LEU A 8 N MSE A 9 1555 1555 1.34 LINK C MSE A 9 N GLN A 10 1555 1555 1.33 LINK C GLU A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N GLN A 98 1555 1555 1.34 LINK C ALA B -1 N MSE B 0 1555 1555 1.34 LINK C MSE B 0 N GLY B 1 1555 1555 1.34 LINK C LEU B 8 N MSE B 9 1555 1555 1.34 LINK C MSE B 9 N GLN B 10 1555 1555 1.33 LINK C GLU B 96 N MSE B 97 1555 1555 1.32 LINK C MSE B 97 N GLN B 98 1555 1555 1.33 CISPEP 1 THR A 3 THR A 4 0 -29.63 CISPEP 2 ASN A 19 HIS A 20 0 -17.30 CISPEP 3 TRP A 69 PRO A 70 0 -2.16 CISPEP 4 GLN A 120 PRO A 121 0 -20.56 CISPEP 5 PRO A 121 ASN A 122 0 -1.70 CISPEP 6 TRP B 69 PRO B 70 0 -1.26 CRYST1 92.040 92.040 55.370 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010865 0.006273 0.000000 0.00000 SCALE2 0.000000 0.012546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018060 0.00000 MTRIX1 1 0.875030 0.433640 0.215130 2.79374 1 MTRIX2 1 0.434770 -0.899440 0.044590 -1.00649 1 MTRIX3 1 0.212830 0.054510 -0.975570 -22.34988 1