HEADER PROTEIN TRANSPORT 23-MAY-05 2BSK TITLE CRYSTAL STRUCTURE OF THE TIM9 TIM10 HEXAMERIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE COMPND 3 SUBUNIT TIM9 A; COMPND 4 CHAIN: A, C, E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE COMPND 8 SUBUNIT TIM10; COMPND 9 CHAIN: B, D, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ORIGAMI DE3 PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX 4T2; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: ORIGAMI DE3 PLYSS; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX 4T2 KEYWDS PROTEIN TRANSPORT, TIM9, TIM10, MITOCHONDRIAL PROTEIN KEYWDS 2 IMPORT, TIM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.T.WEBB,M.A.GORMAN,M.LAZARUS,M.T.RYAN,J.M.GULBIS REVDAT 2 24-FEB-09 2BSK 1 VERSN REVDAT 1 04-JAN-06 2BSK 0 JRNL AUTH C.T.WEBB,M.A.GORMAN,M.LAZAROU,M.T.RYAN,J.M.GULBIS JRNL TITL CRYSTAL STRUCTURE OF THE MITOCHONDRIAL CHAPERONE JRNL TITL 2 TIM9*10 REVEALS A SIX-BLADED ALPHA-PROPELLER. JRNL REF MOL.CELL V. 21 123 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16387659 JRNL DOI 10.1016/J.MOLCEL.2005.11.010 REMARK 2 REMARK 2 RESOLUTION. 3.3 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.3 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 9357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2679 REMARK 3 FREE R VALUE : 0.3193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 481 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.3 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 16.0 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8876 REMARK 3 BIN R VALUE (WORKING SET) : 0.2679 REMARK 3 BIN FREE R VALUE : 0.3193 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 481 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.953 REMARK 3 B22 (A**2) : -3.953 REMARK 3 B33 (A**2) : 7.906 REMARK 3 B12 (A**2) : 0.000 REMARK 3 B13 (A**2) : 0.000 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008254 REMARK 3 BOND ANGLES (DEGREES) : 1.43980 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.197737 REMARK 3 BSOL : 15.9575 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIDE CHAINS FOR THE FOLLOWING REMARK 3 RESIDUES WERE NOT VISIBLE IN THE ELECTRON DENSITY AND HAVE REMARK 3 BEEN MODELLED AS ALANINE RESIDUES. CHAIN A Q13, K15, E16, K58, REMARK 3 Q73, L78, L84, L85 CHAIN B E14, K45, K57, D76 CHAIN C D9, Q10, REMARK 3 K12, Q13, E16, R39, E44, Q54, K58, Q73 CHAIN D Q7, K57, D60, REMARK 3 E63, R64, K67, K68, E77, K81, R82, Q84 CHAIN E Q13, E44, Q54, REMARK 3 K58, Q73, Q74, N75 CHAIN F E12, L13, E14, R31, K45, K68, S73 REMARK 4 REMARK 4 2BSK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-05. REMARK 100 THE PDBE ID CODE IS EBI-24064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9357 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 28% W/V REMARK 280 PEG 3000, 0.2 M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.29400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.71500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.64700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.94100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.64700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.94100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.29400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 ILE A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 10 REMARK 465 ILE A 11 REMARK 465 LYS A 12 REMARK 465 GLY A 86 REMARK 465 GLN A 87 REMARK 465 PRO A 88 REMARK 465 ARG A 89 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 LEU B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 GLN B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 12 REMARK 465 GLU B 78 REMARK 465 LEU B 79 REMARK 465 MSE B 80 REMARK 465 LYS B 81 REMARK 465 ARG B 82 REMARK 465 VAL B 83 REMARK 465 GLN B 84 REMARK 465 GLN B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 GLY B 88 REMARK 465 PRO B 89 REMARK 465 ALA B 90 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 ILE C 5 REMARK 465 PRO C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 PRO C 88 REMARK 465 ARG C 89 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ALA E 3 REMARK 465 GLN E 4 REMARK 465 ILE E 5 REMARK 465 PRO E 6 REMARK 465 GLU E 7 REMARK 465 SER E 8 REMARK 465 ASP E 9 REMARK 465 GLN E 10 REMARK 465 ILE E 11 REMARK 465 LYS E 12 REMARK 465 GLU E 76 REMARK 465 ALA E 77 REMARK 465 LEU E 78 REMARK 465 ALA E 79 REMARK 465 ALA E 80 REMARK 465 LYS E 81 REMARK 465 ALA E 82 REMARK 465 GLY E 83 REMARK 465 LEU E 84 REMARK 465 LEU E 85 REMARK 465 GLY E 86 REMARK 465 GLN E 87 REMARK 465 PRO E 88 REMARK 465 ARG E 89 REMARK 465 MSE F 1 REMARK 465 ASP F 2 REMARK 465 PRO F 3 REMARK 465 LEU F 4 REMARK 465 ARG F 5 REMARK 465 ALA F 6 REMARK 465 GLN F 7 REMARK 465 GLN F 8 REMARK 465 LEU F 9 REMARK 465 MSE F 74 REMARK 465 GLN F 75 REMARK 465 ASP F 76 REMARK 465 GLU F 77 REMARK 465 GLU F 78 REMARK 465 LEU F 79 REMARK 465 MSE F 80 REMARK 465 LYS F 81 REMARK 465 ARG F 82 REMARK 465 VAL F 83 REMARK 465 GLN F 84 REMARK 465 GLN F 85 REMARK 465 SER F 86 REMARK 465 SER F 87 REMARK 465 GLY F 88 REMARK 465 PRO F 89 REMARK 465 ALA F 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 LEU A 78 CG CD1 CD2 REMARK 470 LEU A 84 CG CD1 CD2 REMARK 470 LEU A 85 CG CD1 CD2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 ASP C 9 CG OD1 OD2 REMARK 470 GLN C 10 CG CD OE1 NE2 REMARK 470 LYS C 12 CG CD CE NZ REMARK 470 GLN C 13 CG CD OE1 NE2 REMARK 470 GLU C 16 CG CD OE1 OE2 REMARK 470 ARG C 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 GLN C 54 CG CD OE1 NE2 REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 GLN C 73 CG CD OE1 NE2 REMARK 470 GLU C 76 CG CD OE1 OE2 REMARK 470 GLN D 7 CG CD OE1 NE2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 ASP D 60 CG OD1 OD2 REMARK 470 GLU D 63 CG CD OE1 OE2 REMARK 470 ARG D 64 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 67 CG CD CE NZ REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLU D 77 CG CD OE1 OE2 REMARK 470 LYS D 81 CG CD CE NZ REMARK 470 ARG D 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 84 CG CD OE1 NE2 REMARK 470 SER D 86 OG REMARK 470 GLN E 13 CG CD OE1 NE2 REMARK 470 GLU E 44 CG CD OE1 OE2 REMARK 470 GLN E 54 CG CD OE1 NE2 REMARK 470 LYS E 58 CG CD CE NZ REMARK 470 GLN E 73 CG CD OE1 NE2 REMARK 470 GLN E 74 CG CD OE1 NE2 REMARK 470 ASN E 75 CG OD1 ND2 REMARK 470 GLU F 12 CG CD OE1 OE2 REMARK 470 LEU F 13 CG CD1 CD2 REMARK 470 GLU F 14 CG CD OE1 OE2 REMARK 470 ARG F 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 45 CG CD CE NZ REMARK 470 LYS F 68 CG CD CE NZ REMARK 470 SER F 73 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 36 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 21 -73.51 -30.21 REMARK 500 GLU A 26 -72.83 -55.98 REMARK 500 LYS A 34 -45.40 -142.49 REMARK 500 VAL A 41 93.49 -53.66 REMARK 500 LYS A 42 141.18 -32.42 REMARK 500 MET A 65 -78.17 -41.89 REMARK 500 ARG A 66 -29.03 -37.60 REMARK 500 GLU A 69 -5.82 -42.24 REMARK 500 PRO B 36 8.21 -58.81 REMARK 500 TYR B 38 55.88 32.49 REMARK 500 LYS B 67 -70.17 -74.73 REMARK 500 PHE C 17 -87.84 -66.62 REMARK 500 CYS C 32 -74.00 -76.96 REMARK 500 LYS C 34 11.18 -143.97 REMARK 500 THR C 37 25.53 -162.69 REMARK 500 THR C 38 134.09 -171.73 REMARK 500 TYR C 56 -70.23 -57.77 REMARK 500 THR C 60 -16.07 -46.11 REMARK 500 ILE C 63 -75.78 -52.72 REMARK 500 LYS C 81 6.33 -66.73 REMARK 500 ASP D 2 173.51 171.28 REMARK 500 ALA D 6 -49.64 -28.57 REMARK 500 ALA D 10 -31.57 -38.45 REMARK 500 ALA D 11 -9.56 -54.83 REMARK 500 LEU D 13 -9.69 -52.07 REMARK 500 ALA D 19 -71.86 -62.24 REMARK 500 ASN D 23 -71.08 -51.50 REMARK 500 ARG D 24 -67.10 -28.04 REMARK 500 LYS D 67 -71.45 -42.20 REMARK 500 LEU D 72 9.05 -51.50 REMARK 500 GLU D 77 21.86 -62.64 REMARK 500 PRO D 89 54.16 -5.51 REMARK 500 ASP E 35 108.74 69.01 REMARK 500 ARG E 39 39.24 -99.47 REMARK 500 LYS E 55 -73.46 -44.69 REMARK 500 GLU E 69 8.05 -68.18 REMARK 500 TYR E 70 -60.87 -99.09 REMARK 500 LEU F 13 -71.97 -76.66 REMARK 500 GLU F 14 -45.02 -24.29 REMARK 500 ALA F 19 -29.39 -146.48 REMARK 500 TYR F 22 -39.20 -37.36 REMARK 500 ALA F 28 -81.61 -61.09 REMARK 500 CYS F 29 -19.35 -45.42 REMARK 500 PRO F 36 40.77 -75.82 REMARK 500 ALA F 41 -8.26 -55.68 REMARK 500 GLU F 47 -30.44 -39.46 REMARK 500 LYS F 67 -74.59 -54.12 REMARK 500 LYS F 68 -24.09 -39.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 2BSK A 1 89 UNP Q9Y5J7 TIM9A_HUMAN 1 89 DBREF 2BSK C 1 89 UNP Q9Y5J7 TIM9A_HUMAN 1 89 DBREF 2BSK E 1 89 UNP Q9Y5J7 TIM9A_HUMAN 1 89 DBREF 2BSK B 1 90 UNP P62072 TIM10_HUMAN 1 90 DBREF 2BSK D 1 90 UNP P62072 TIM10_HUMAN 1 90 DBREF 2BSK F 1 90 UNP P62072 TIM10_HUMAN 1 90 SEQRES 1 A 89 MET ALA ALA GLN ILE PRO GLU SER ASP GLN ILE LYS GLN SEQRES 2 A 89 PHE LYS GLU PHE LEU GLY THR TYR ASN LYS LEU THR GLU SEQRES 3 A 89 THR CYS PHE LEU ASP CYS VAL LYS ASP PHE THR THR ARG SEQRES 4 A 89 GLU VAL LYS PRO GLU GLU THR THR CYS SER GLU HIS CYS SEQRES 5 A 89 LEU GLN LYS TYR LEU LYS MET THR GLN ARG ILE SER MET SEQRES 6 A 89 ARG PHE GLN GLU TYR HIS ILE GLN GLN ASN GLU ALA LEU SEQRES 7 A 89 ALA ALA LYS ALA GLY LEU LEU GLY GLN PRO ARG SEQRES 1 B 90 MSE ASP PRO LEU ARG ALA GLN GLN LEU ALA ALA GLU LEU SEQRES 2 B 90 GLU VAL GLU MSE MSE ALA ASP MSE TYR ASN ARG MSE THR SEQRES 3 B 90 SER ALA CYS HIS ARG LYS CYS VAL PRO PRO HIS TYR LYS SEQRES 4 B 90 GLU ALA GLU LEU SER LYS GLY GLU SER VAL CYS LEU ASP SEQRES 5 B 90 ARG CYS VAL SER LYS TYR LEU ASP ILE HIS GLU ARG MSE SEQRES 6 B 90 GLY LYS LYS LEU THR GLU LEU SER MSE GLN ASP GLU GLU SEQRES 7 B 90 LEU MSE LYS ARG VAL GLN GLN SER SER GLY PRO ALA SEQRES 1 C 89 MET ALA ALA GLN ILE PRO GLU SER ASP GLN ILE LYS GLN SEQRES 2 C 89 PHE LYS GLU PHE LEU GLY THR TYR ASN LYS LEU THR GLU SEQRES 3 C 89 THR CYS PHE LEU ASP CYS VAL LYS ASP PHE THR THR ARG SEQRES 4 C 89 GLU VAL LYS PRO GLU GLU THR THR CYS SER GLU HIS CYS SEQRES 5 C 89 LEU GLN LYS TYR LEU LYS MET THR GLN ARG ILE SER MET SEQRES 6 C 89 ARG PHE GLN GLU TYR HIS ILE GLN GLN ASN GLU ALA LEU SEQRES 7 C 89 ALA ALA LYS ALA GLY LEU LEU GLY GLN PRO ARG SEQRES 1 D 90 MSE ASP PRO LEU ARG ALA GLN GLN LEU ALA ALA GLU LEU SEQRES 2 D 90 GLU VAL GLU MSE MSE ALA ASP MSE TYR ASN ARG MSE THR SEQRES 3 D 90 SER ALA CYS HIS ARG LYS CYS VAL PRO PRO HIS TYR LYS SEQRES 4 D 90 GLU ALA GLU LEU SER LYS GLY GLU SER VAL CYS LEU ASP SEQRES 5 D 90 ARG CYS VAL SER LYS TYR LEU ASP ILE HIS GLU ARG MSE SEQRES 6 D 90 GLY LYS LYS LEU THR GLU LEU SER MSE GLN ASP GLU GLU SEQRES 7 D 90 LEU MSE LYS ARG VAL GLN GLN SER SER GLY PRO ALA SEQRES 1 E 89 MET ALA ALA GLN ILE PRO GLU SER ASP GLN ILE LYS GLN SEQRES 2 E 89 PHE LYS GLU PHE LEU GLY THR TYR ASN LYS LEU THR GLU SEQRES 3 E 89 THR CYS PHE LEU ASP CYS VAL LYS ASP PHE THR THR ARG SEQRES 4 E 89 GLU VAL LYS PRO GLU GLU THR THR CYS SER GLU HIS CYS SEQRES 5 E 89 LEU GLN LYS TYR LEU LYS MET THR GLN ARG ILE SER MET SEQRES 6 E 89 ARG PHE GLN GLU TYR HIS ILE GLN GLN ASN GLU ALA LEU SEQRES 7 E 89 ALA ALA LYS ALA GLY LEU LEU GLY GLN PRO ARG SEQRES 1 F 90 MSE ASP PRO LEU ARG ALA GLN GLN LEU ALA ALA GLU LEU SEQRES 2 F 90 GLU VAL GLU MSE MSE ALA ASP MSE TYR ASN ARG MSE THR SEQRES 3 F 90 SER ALA CYS HIS ARG LYS CYS VAL PRO PRO HIS TYR LYS SEQRES 4 F 90 GLU ALA GLU LEU SER LYS GLY GLU SER VAL CYS LEU ASP SEQRES 5 F 90 ARG CYS VAL SER LYS TYR LEU ASP ILE HIS GLU ARG MSE SEQRES 6 F 90 GLY LYS LYS LEU THR GLU LEU SER MSE GLN ASP GLU GLU SEQRES 7 F 90 LEU MSE LYS ARG VAL GLN GLN SER SER GLY PRO ALA MODRES 2BSK MSE B 17 MET SELENOMETHIONINE MODRES 2BSK MSE B 18 MET SELENOMETHIONINE MODRES 2BSK MSE B 21 MET SELENOMETHIONINE MODRES 2BSK MSE B 25 MET SELENOMETHIONINE MODRES 2BSK MSE B 65 MET SELENOMETHIONINE MODRES 2BSK MSE B 74 MET SELENOMETHIONINE MODRES 2BSK MSE D 1 MET SELENOMETHIONINE MODRES 2BSK MSE D 17 MET SELENOMETHIONINE MODRES 2BSK MSE D 18 MET SELENOMETHIONINE MODRES 2BSK MSE D 21 MET SELENOMETHIONINE MODRES 2BSK MSE D 25 MET SELENOMETHIONINE MODRES 2BSK MSE D 65 MET SELENOMETHIONINE MODRES 2BSK MSE D 74 MET SELENOMETHIONINE MODRES 2BSK MSE D 80 MET SELENOMETHIONINE MODRES 2BSK MSE F 17 MET SELENOMETHIONINE MODRES 2BSK MSE F 18 MET SELENOMETHIONINE MODRES 2BSK MSE F 21 MET SELENOMETHIONINE MODRES 2BSK MSE F 25 MET SELENOMETHIONINE MODRES 2BSK MSE F 65 MET SELENOMETHIONINE HET MSE B 17 8 HET MSE B 18 8 HET MSE B 21 8 HET MSE B 25 8 HET MSE B 65 8 HET MSE B 74 8 HET MSE D 1 8 HET MSE D 17 8 HET MSE D 18 8 HET MSE D 21 8 HET MSE D 25 8 HET MSE D 65 8 HET MSE D 74 8 HET MSE D 80 8 HET MSE F 17 8 HET MSE F 18 8 HET MSE F 21 8 HET MSE F 25 8 HET MSE F 65 8 HETNAM MSE SELENOMETHIONINE FORMUL 2 MSE 19(C5 H11 N O2 SE) HELIX 1 1 PHE A 14 VAL A 33 1 20 HELIX 2 2 LYS A 42 ILE A 72 1 31 HELIX 3 3 ASN A 75 ALA A 82 1 8 HELIX 4 4 MSE B 18 VAL B 34 1 17 HELIX 5 5 SER B 44 GLN B 75 1 32 HELIX 6 6 GLN C 10 PHE C 14 5 5 HELIX 7 7 LYS C 15 CYS C 32 1 18 HELIX 8 8 LYS C 42 GLN C 68 1 27 HELIX 9 9 GLN C 74 ALA C 79 1 6 HELIX 10 10 LEU D 4 ALA D 11 1 8 HELIX 11 11 GLU D 12 VAL D 34 1 23 HELIX 12 12 SER D 44 GLN D 75 1 32 HELIX 13 13 LEU D 79 SER D 87 1 9 HELIX 14 14 GLU E 16 VAL E 33 1 18 HELIX 15 15 LYS E 42 ASN E 75 1 34 HELIX 16 16 ALA F 10 MSE F 18 1 9 HELIX 17 17 ALA F 19 VAL F 34 1 16 HELIX 18 18 SER F 44 GLU F 71 1 28 SSBOND 1 CYS A 28 CYS A 52 1555 1555 2.04 SSBOND 2 CYS A 32 CYS A 48 1555 1555 2.03 SSBOND 3 CYS B 29 CYS B 54 1555 1555 2.05 SSBOND 4 CYS B 33 CYS B 50 1555 1555 2.04 SSBOND 5 CYS C 28 CYS C 52 1555 1555 2.03 SSBOND 6 CYS C 32 CYS C 48 1555 1555 2.05 SSBOND 7 CYS D 29 CYS D 54 1555 1555 2.05 SSBOND 8 CYS D 33 CYS D 50 1555 1555 2.04 SSBOND 9 CYS E 28 CYS E 52 1555 1555 2.04 SSBOND 10 CYS E 32 CYS E 48 1555 1555 2.03 SSBOND 11 CYS F 29 CYS F 54 1555 1555 2.04 SSBOND 12 CYS F 33 CYS F 50 1555 1555 2.05 LINK C GLU B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N MSE B 18 1555 1555 1.33 LINK C MSE B 18 N ALA B 19 1555 1555 1.33 LINK C ASP B 20 N MSE B 21 1555 1555 1.32 LINK C MSE B 21 N TYR B 22 1555 1555 1.33 LINK C ARG B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N THR B 26 1555 1555 1.33 LINK C ARG B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N GLY B 66 1555 1555 1.33 LINK C SER B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N GLN B 75 1555 1555 1.33 LINK C MSE D 1 N ASP D 2 1555 1555 1.33 LINK C GLU D 16 N MSE D 17 1555 1555 1.34 LINK C MSE D 17 N MSE D 18 1555 1555 1.33 LINK C MSE D 18 N ALA D 19 1555 1555 1.32 LINK C ASP D 20 N MSE D 21 1555 1555 1.32 LINK C MSE D 21 N TYR D 22 1555 1555 1.33 LINK C ARG D 24 N MSE D 25 1555 1555 1.33 LINK C MSE D 25 N THR D 26 1555 1555 1.33 LINK C ARG D 64 N MSE D 65 1555 1555 1.33 LINK C MSE D 65 N GLY D 66 1555 1555 1.33 LINK C SER D 73 N MSE D 74 1555 1555 1.33 LINK C MSE D 74 N GLN D 75 1555 1555 1.33 LINK C LEU D 79 N MSE D 80 1555 1555 1.33 LINK C MSE D 80 N LYS D 81 1555 1555 1.33 LINK C GLU F 16 N MSE F 17 1555 1555 1.33 LINK C MSE F 17 N MSE F 18 1555 1555 1.32 LINK C MSE F 18 N ALA F 19 1555 1555 1.33 LINK C ASP F 20 N MSE F 21 1555 1555 1.32 LINK C MSE F 21 N TYR F 22 1555 1555 1.33 LINK C ARG F 24 N MSE F 25 1555 1555 1.32 LINK C MSE F 25 N THR F 26 1555 1555 1.33 LINK C ARG F 64 N MSE F 65 1555 1555 1.33 LINK C MSE F 65 N GLY F 66 1555 1555 1.33 CRYST1 107.430 107.430 110.588 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009308 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009043 0.00000