HEADER TRANSFERASE 20-MAR-08 2BUE TITLE STRUCTURE OF AAC(6')-IB IN COMPLEX WITH RIBOSTAMYCIN AND COENZYME A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AAC(6')-IB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLUROQUINOLONE ACETYLATING AMINOGLYCOSIDE ACETYLTRANSFERASE, COMPND 5 AAC6-IB; COMPND 6 EC: 2.3.1.82; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS GNAT, TRANSFERASE, AMINOGLYCOSIDE, FLUOROQUINOLONE, KEYWDS 2 ACETYLTRANSFERASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,C.H.PARK,S.S.HEDGE,D.C.HOOPER,J.S.BLANCHARD REVDAT 5 13-DEC-23 2BUE 1 HETSYN LINK REVDAT 4 06-MAR-19 2BUE 1 REMARK REVDAT 3 24-FEB-09 2BUE 1 VERSN REVDAT 2 16-SEP-08 2BUE 1 JRNL REMARK REVDAT 1 02-SEP-08 2BUE 0 JRNL AUTH M.W.VETTING,C.H.PARK,S.S.HEGDE,G.A.JACOBY,D.C.HOOPER, JRNL AUTH 2 J.S.BLANCHARD JRNL TITL MECHANISTIC AND STRUCTURAL ANALYSIS OF AMINOGLYCOSIDE JRNL TITL 2 N-ACETYLTRANSFERASE AAC(6')-IB AND ITS BIFUNCTIONAL, JRNL TITL 3 FLUOROQUINOLONE-ACTIVE AAC(6')-IB-CR VARIANT. JRNL REF BIOCHEMISTRY V. 47 9825 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18710261 JRNL DOI 10.1021/BI800664X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 149.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 25956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1566 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2156 ; 1.335 ; 2.034 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 5.248 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;31.549 ;24.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 246 ;12.183 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1180 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 783 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1090 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 222 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 942 ; 0.928 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1481 ; 1.482 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 722 ; 2.150 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 669 ; 3.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1290035753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC RAXIS-IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 24.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1V0C REMARK 200 REMARK 200 REMARK: ISOMORPHOUS WITH PDB ENTRY 1V0C REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10MG/ML, 20 MM TRIS PH 7.5, REMARK 280 20 MM NACL, 3 MM ACCOA) PRECIPITANT (20% PEG3350, 200 MM CALCIUM REMARK 280 ACETATE, 100 MM NACACODYLATE PH 6.75) VAPOR DIFFUSION UNDER OIL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.15250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.73750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.73750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.22875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.73750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.73750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.07625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.73750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.73750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.22875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.73750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.73750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.07625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.15250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 102 TO TRP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 179 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 LYS A 12 REMARK 465 TYR A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 THR A 17 REMARK 465 ASN A 18 REMARK 465 SER A 19 REMARK 465 ASN A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2062 O HOH A 2066 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 152 57.60 -143.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 OE1 REMARK 620 2 GLU A 38 OE2 51.3 REMARK 620 3 ARG A 194 O 85.9 88.8 REMARK 620 4 SER A 197 O 77.6 128.9 85.9 REMARK 620 5 ALA A 199 O 87.0 90.4 171.4 88.0 REMARK 620 6 HOH A2039 O 128.7 77.4 92.6 153.6 95.6 REMARK 620 7 HOH A2236 O 155.1 149.5 82.4 79.8 102.4 73.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE2 REMARK 620 2 ASP A 179 O 169.5 REMARK 620 3 HOH A2172 O 87.9 95.0 REMARK 620 4 HOH A2177 O 86.5 96.7 144.8 REMARK 620 5 HOH A2182 O 86.6 86.2 152.2 61.9 REMARK 620 6 HOH A2220 O 95.0 76.1 74.9 140.2 78.5 REMARK 620 7 HOH A2225 O 102.0 88.4 73.8 73.5 134.0 143.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RIO A1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VQY RELATED DB: PDB REMARK 900 STRUCTURE OF AAC(6')-IB IN COMPLEX WITH PARMOMYCIN AND ACETYLCOA. REMARK 900 RELATED ID: 1V0C RELATED DB: PDB REMARK 900 STRUCTURE OF AAC(6')-IB IN COMPLEX WITH KANAMYCIN C AND ACETYLCOA. REMARK 999 REMARK 999 SEQUENCE REMARK 999 GSH ON N-TERMINUS FROM CLEAVED HEXA-HISTIDINE TAG DBREF 2BUE A -2 0 PDB 2BUE 2BUE -2 0 DBREF 2BUE A 1 199 UNP Q6SJ71 Q6SJ71_ECOLX 1 199 SEQADV 2BUE TRP A 102 UNP Q6SJ71 ARG 102 ENGINEERED MUTATION SEQADV 2BUE ASP A 179 UNP Q6SJ71 TYR 179 ENGINEERED MUTATION SEQRES 1 A 202 GLY SER HIS MET SER ASN ALA LYS THR LYS LEU GLY ILE SEQRES 2 A 202 THR LYS TYR SER ILE VAL THR ASN SER ASN ASP SER VAL SEQRES 3 A 202 THR LEU ARG LEU MET THR GLU HIS ASP LEU ALA MET LEU SEQRES 4 A 202 TYR GLU TRP LEU ASN ARG SER HIS ILE VAL GLU TRP TRP SEQRES 5 A 202 GLY GLY GLU GLU ALA ARG PRO THR LEU ALA ASP VAL GLN SEQRES 6 A 202 GLU GLN TYR LEU PRO SER VAL LEU ALA GLN GLU SER VAL SEQRES 7 A 202 THR PRO TYR ILE ALA MET LEU ASN GLY GLU PRO ILE GLY SEQRES 8 A 202 TYR ALA GLN SER TYR VAL ALA LEU GLY SER GLY ASP GLY SEQRES 9 A 202 TRP TRP GLU GLU GLU THR ASP PRO GLY VAL ARG GLY ILE SEQRES 10 A 202 ASP GLN LEU LEU ALA ASN ALA SER GLN LEU GLY LYS GLY SEQRES 11 A 202 LEU GLY THR LYS LEU VAL ARG ALA LEU VAL GLU LEU LEU SEQRES 12 A 202 PHE ASN ASP PRO GLU VAL THR LYS ILE GLN THR ASP PRO SEQRES 13 A 202 SER PRO SER ASN LEU ARG ALA ILE ARG CYS TYR GLU LYS SEQRES 14 A 202 ALA GLY PHE GLU ARG GLN GLY THR VAL THR THR PRO ASP SEQRES 15 A 202 GLY PRO ALA VAL TYR MET VAL GLN THR ARG GLN ALA PHE SEQRES 16 A 202 GLU ARG THR ARG SER ASP ALA HET COA A1200 48 HET RIO A1201 31 HET CA A1202 1 HET CA A1203 1 HETNAM COA COENZYME A HETNAM RIO RIBOSTAMYCIN HETNAM CA CALCIUM ION HETSYN RIO 5-AMINO-2-AMINOMETHYL-6-[4,6-DIAMINO-2-(3,4-DIHYDROXY- HETSYN 2 RIO 5-HYDROXYMETHYL-TETRAHYDRO-FURAN-2-YLOXY)-3-HYDROXY- HETSYN 3 RIO CYCLOHEXYLOXY ]-TETRAHYDRO-PYRAN-3,4-DIOL; (1R,2R,3S, HETSYN 4 RIO 4R,6S)-4,6-DIAMINO-3-HYDROXY-2-(BETA-D- HETSYN 5 RIO RIBOFURANOSYLOXY)CYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY- HETSYN 6 RIO ALPHA-D-GLUCOPYRANOSIDE FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 RIO C17 H34 N4 O10 FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *250(H2 O) HELIX 1 1 THR A 29 HIS A 31 5 3 HELIX 2 2 ASP A 32 ASN A 41 1 10 HELIX 3 3 ARG A 42 GLU A 47 1 6 HELIX 4 4 GLY A 50 ALA A 54 5 5 HELIX 5 5 THR A 57 LEU A 66 1 10 HELIX 6 6 LEU A 66 GLN A 72 1 7 HELIX 7 7 LEU A 96 SER A 98 5 3 HELIX 8 8 ASN A 120 LEU A 124 5 5 HELIX 9 9 GLY A 127 ASN A 142 1 16 HELIX 10 10 ASN A 157 ALA A 167 1 11 HELIX 11 11 ARG A 189 THR A 195 1 7 SHEET 1 AA 7 VAL A 23 LEU A 27 0 SHEET 2 AA 7 VAL A 75 LEU A 82 -1 O ILE A 79 N ARG A 26 SHEET 3 AA 7 GLU A 85 VAL A 94 -1 O GLU A 85 N LEU A 82 SHEET 4 AA 7 VAL A 111 LEU A 118 -1 O GLY A 113 N TYR A 93 SHEET 5 AA 7 LYS A 148 THR A 151 1 O LYS A 148 N ARG A 112 SHEET 6 AA 7 GLY A 180 THR A 188 -1 O MET A 185 N THR A 151 SHEET 7 AA 7 GLU A 170 THR A 177 -1 O GLU A 170 N VAL A 186 LINK OE1 GLU A 38 CA CA A1203 4555 1555 2.62 LINK OE2 GLU A 38 CA CA A1203 4555 1555 2.50 LINK OE2 GLU A 145 CA CA A1202 1555 1555 2.26 LINK O ASP A 179 CA CA A1202 6555 1555 2.38 LINK O ARG A 194 CA CA A1203 1555 1555 2.36 LINK O SER A 197 CA CA A1203 1555 1555 2.43 LINK O ALA A 199 CA CA A1203 1555 1555 2.43 LINK CA CA A1202 O HOH A2172 1555 1555 2.42 LINK CA CA A1202 O HOH A2177 1555 1555 2.41 LINK CA CA A1202 O HOH A2182 1555 1555 2.49 LINK CA CA A1202 O HOH A2220 1555 6555 2.43 LINK CA CA A1202 O HOH A2225 1555 6555 2.40 LINK CA CA A1203 O HOH A2039 1555 4555 2.36 LINK CA CA A1203 O HOH A2236 1555 1555 2.32 SITE 1 AC1 24 HIS A 44 TRP A 48 GLN A 116 LEU A 117 SITE 2 AC1 24 LEU A 118 LEU A 124 GLY A 125 LYS A 126 SITE 3 AC1 24 GLY A 127 LEU A 128 GLY A 129 THR A 130 SITE 4 AC1 24 ASN A 157 LEU A 158 ARG A 159 ARG A 162 SITE 5 AC1 24 LYS A 166 RIO A1201 HOH A2191 HOH A2196 SITE 6 AC1 24 HOH A2239 HOH A2240 HOH A2242 HOH A2243 SITE 1 AC2 21 TRP A 48 GLY A 50 TYR A 65 GLU A 73 SITE 2 AC2 21 GLN A 91 TYR A 93 TRP A 102 TRP A 103 SITE 3 AC2 21 ASP A 115 ASP A 152 COA A1200 HOH A2186 SITE 4 AC2 21 HOH A2196 HOH A2219 HOH A2224 HOH A2244 SITE 5 AC2 21 HOH A2245 HOH A2246 HOH A2247 HOH A2248 SITE 6 AC2 21 HOH A2249 SITE 1 AC3 7 GLU A 145 ASP A 179 HOH A2172 HOH A2177 SITE 2 AC3 7 HOH A2182 HOH A2220 HOH A2225 SITE 1 AC4 6 GLU A 38 ARG A 194 SER A 197 ALA A 199 SITE 2 AC4 6 HOH A2039 HOH A2236 CRYST1 57.475 57.475 148.305 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006743 0.00000