data_2BVM # _entry.id 2BVM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2BVM pdb_00002bvm 10.2210/pdb2bvm/pdb PDBE EBI-24675 ? ? WWPDB D_1290024675 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2BVL _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF TOXIN B FROM CLOSTRIDIUM DIFFICILE IN COMPLEX WITH UDP, GLC AND MANGANESE ION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2BVM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-06-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Reinert, D.J.' 1 'Jank, T.' 2 'Aktories, K.' 3 'Schulz, G.E.' 4 # _citation.id primary _citation.title 'Structural Basis for the Function of Clostridium Difficile Toxin B.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 351 _citation.page_first 973 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16054646 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2005.06.071 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Reinert, D.J.' 1 ? primary 'Jank, T.' 2 ? primary 'Aktories, K.' 3 ? primary 'Schulz, G.E.' 4 ? # _cell.entry_id 2BVM _cell.length_a 65.777 _cell.length_b 97.298 _cell.length_c 114.448 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BVM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TOXIN B' 62924.379 1 2.4.1.- YES 'CATALYTIC DOMAIN, RESIDUES 1-541' ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 3 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? 4 non-polymer man alpha-D-glucopyranose 180.156 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 129 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLVNRKQLEKMANVRFRTQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDICIDTYKKSGRNKALKKFKEYLV TEVLELKNNNLTPVEKNLHFVWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFREN LNDPRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEIDELNTYIEESLNKITQNSGNDV RNFGEFKNGESFNLYEQELVERWNLAAASDILRISALKEIGGMYLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTKLEAI MKYKEYIPEYTSEHFDMLDEEVQSSFESVLASKSDKSEIFSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLIV KQIENRYKILNNSLNPAISEDNDFNTTTNTFIDSIMAEANADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQD LLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASLWSFDDARAKAQFEEYKRNYFEGA ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLVNRKQLEKMANVRFRTQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDICIDTYKKSGRNKALKKFKEYLV TEVLELKNNNLTPVEKNLHFVWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFREN LNDPRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEIDELNTYIEESLNKITQNSGNDV RNFGEFKNGESFNLYEQELVERWNLAAASDILRISALKEIGGMYLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTKLEAI MKYKEYIPEYTSEHFDMLDEEVQSSFESVLASKSDKSEIFSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLIV KQIENRYKILNNSLNPAISEDNDFNTTTNTFIDSIMAEANADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQD LLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASLWSFDDARAKAQFEEYKRNYFEGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 VAL n 1 5 ASN n 1 6 ARG n 1 7 LYS n 1 8 GLN n 1 9 LEU n 1 10 GLU n 1 11 LYS n 1 12 MET n 1 13 ALA n 1 14 ASN n 1 15 VAL n 1 16 ARG n 1 17 PHE n 1 18 ARG n 1 19 THR n 1 20 GLN n 1 21 GLU n 1 22 ASP n 1 23 GLU n 1 24 TYR n 1 25 VAL n 1 26 ALA n 1 27 ILE n 1 28 LEU n 1 29 ASP n 1 30 ALA n 1 31 LEU n 1 32 GLU n 1 33 GLU n 1 34 TYR n 1 35 HIS n 1 36 ASN n 1 37 MET n 1 38 SER n 1 39 GLU n 1 40 ASN n 1 41 THR n 1 42 VAL n 1 43 VAL n 1 44 GLU n 1 45 LYS n 1 46 TYR n 1 47 LEU n 1 48 LYS n 1 49 LEU n 1 50 LYS n 1 51 ASP n 1 52 ILE n 1 53 ASN n 1 54 SER n 1 55 LEU n 1 56 THR n 1 57 ASP n 1 58 ILE n 1 59 CYS n 1 60 ILE n 1 61 ASP n 1 62 THR n 1 63 TYR n 1 64 LYS n 1 65 LYS n 1 66 SER n 1 67 GLY n 1 68 ARG n 1 69 ASN n 1 70 LYS n 1 71 ALA n 1 72 LEU n 1 73 LYS n 1 74 LYS n 1 75 PHE n 1 76 LYS n 1 77 GLU n 1 78 TYR n 1 79 LEU n 1 80 VAL n 1 81 THR n 1 82 GLU n 1 83 VAL n 1 84 LEU n 1 85 GLU n 1 86 LEU n 1 87 LYS n 1 88 ASN n 1 89 ASN n 1 90 ASN n 1 91 LEU n 1 92 THR n 1 93 PRO n 1 94 VAL n 1 95 GLU n 1 96 LYS n 1 97 ASN n 1 98 LEU n 1 99 HIS n 1 100 PHE n 1 101 VAL n 1 102 TRP n 1 103 ILE n 1 104 GLY n 1 105 GLY n 1 106 GLN n 1 107 ILE n 1 108 ASN n 1 109 ASP n 1 110 THR n 1 111 ALA n 1 112 ILE n 1 113 ASN n 1 114 TYR n 1 115 ILE n 1 116 ASN n 1 117 GLN n 1 118 TRP n 1 119 LYS n 1 120 ASP n 1 121 VAL n 1 122 ASN n 1 123 SER n 1 124 ASP n 1 125 TYR n 1 126 ASN n 1 127 VAL n 1 128 ASN n 1 129 VAL n 1 130 PHE n 1 131 TYR n 1 132 ASP n 1 133 SER n 1 134 ASN n 1 135 ALA n 1 136 PHE n 1 137 LEU n 1 138 ILE n 1 139 ASN n 1 140 THR n 1 141 LEU n 1 142 LYS n 1 143 LYS n 1 144 THR n 1 145 VAL n 1 146 VAL n 1 147 GLU n 1 148 SER n 1 149 ALA n 1 150 ILE n 1 151 ASN n 1 152 ASP n 1 153 THR n 1 154 LEU n 1 155 GLU n 1 156 SER n 1 157 PHE n 1 158 ARG n 1 159 GLU n 1 160 ASN n 1 161 LEU n 1 162 ASN n 1 163 ASP n 1 164 PRO n 1 165 ARG n 1 166 PHE n 1 167 ASP n 1 168 TYR n 1 169 ASN n 1 170 LYS n 1 171 PHE n 1 172 PHE n 1 173 ARG n 1 174 LYS n 1 175 ARG n 1 176 MET n 1 177 GLU n 1 178 ILE n 1 179 ILE n 1 180 TYR n 1 181 ASP n 1 182 LYS n 1 183 GLN n 1 184 LYS n 1 185 ASN n 1 186 PHE n 1 187 ILE n 1 188 ASN n 1 189 TYR n 1 190 TYR n 1 191 LYS n 1 192 ALA n 1 193 GLN n 1 194 ARG n 1 195 GLU n 1 196 GLU n 1 197 ASN n 1 198 PRO n 1 199 GLU n 1 200 LEU n 1 201 ILE n 1 202 ILE n 1 203 ASP n 1 204 ASP n 1 205 ILE n 1 206 VAL n 1 207 LYS n 1 208 THR n 1 209 TYR n 1 210 LEU n 1 211 SER n 1 212 ASN n 1 213 GLU n 1 214 TYR n 1 215 SER n 1 216 LYS n 1 217 GLU n 1 218 ILE n 1 219 ASP n 1 220 GLU n 1 221 LEU n 1 222 ASN n 1 223 THR n 1 224 TYR n 1 225 ILE n 1 226 GLU n 1 227 GLU n 1 228 SER n 1 229 LEU n 1 230 ASN n 1 231 LYS n 1 232 ILE n 1 233 THR n 1 234 GLN n 1 235 ASN n 1 236 SER n 1 237 GLY n 1 238 ASN n 1 239 ASP n 1 240 VAL n 1 241 ARG n 1 242 ASN n 1 243 PHE n 1 244 GLY n 1 245 GLU n 1 246 PHE n 1 247 LYS n 1 248 ASN n 1 249 GLY n 1 250 GLU n 1 251 SER n 1 252 PHE n 1 253 ASN n 1 254 LEU n 1 255 TYR n 1 256 GLU n 1 257 GLN n 1 258 GLU n 1 259 LEU n 1 260 VAL n 1 261 GLU n 1 262 ARG n 1 263 TRP n 1 264 ASN n 1 265 LEU n 1 266 ALA n 1 267 ALA n 1 268 ALA n 1 269 SER n 1 270 ASP n 1 271 ILE n 1 272 LEU n 1 273 ARG n 1 274 ILE n 1 275 SER n 1 276 ALA n 1 277 LEU n 1 278 LYS n 1 279 GLU n 1 280 ILE n 1 281 GLY n 1 282 GLY n 1 283 MET n 1 284 TYR n 1 285 LEU n 1 286 ASP n 1 287 VAL n 1 288 ASP n 1 289 MET n 1 290 LEU n 1 291 PRO n 1 292 GLY n 1 293 ILE n 1 294 GLN n 1 295 PRO n 1 296 ASP n 1 297 LEU n 1 298 PHE n 1 299 GLU n 1 300 SER n 1 301 ILE n 1 302 GLU n 1 303 LYS n 1 304 PRO n 1 305 SER n 1 306 SER n 1 307 VAL n 1 308 THR n 1 309 VAL n 1 310 ASP n 1 311 PHE n 1 312 TRP n 1 313 GLU n 1 314 MET n 1 315 THR n 1 316 LYS n 1 317 LEU n 1 318 GLU n 1 319 ALA n 1 320 ILE n 1 321 MET n 1 322 LYS n 1 323 TYR n 1 324 LYS n 1 325 GLU n 1 326 TYR n 1 327 ILE n 1 328 PRO n 1 329 GLU n 1 330 TYR n 1 331 THR n 1 332 SER n 1 333 GLU n 1 334 HIS n 1 335 PHE n 1 336 ASP n 1 337 MET n 1 338 LEU n 1 339 ASP n 1 340 GLU n 1 341 GLU n 1 342 VAL n 1 343 GLN n 1 344 SER n 1 345 SER n 1 346 PHE n 1 347 GLU n 1 348 SER n 1 349 VAL n 1 350 LEU n 1 351 ALA n 1 352 SER n 1 353 LYS n 1 354 SER n 1 355 ASP n 1 356 LYS n 1 357 SER n 1 358 GLU n 1 359 ILE n 1 360 PHE n 1 361 SER n 1 362 SER n 1 363 LEU n 1 364 GLY n 1 365 ASP n 1 366 MET n 1 367 GLU n 1 368 ALA n 1 369 SER n 1 370 PRO n 1 371 LEU n 1 372 GLU n 1 373 VAL n 1 374 LYS n 1 375 ILE n 1 376 ALA n 1 377 PHE n 1 378 ASN n 1 379 SER n 1 380 LYS n 1 381 GLY n 1 382 ILE n 1 383 ILE n 1 384 ASN n 1 385 GLN n 1 386 GLY n 1 387 LEU n 1 388 ILE n 1 389 SER n 1 390 VAL n 1 391 LYS n 1 392 ASP n 1 393 SER n 1 394 TYR n 1 395 CYS n 1 396 SER n 1 397 ASN n 1 398 LEU n 1 399 ILE n 1 400 VAL n 1 401 LYS n 1 402 GLN n 1 403 ILE n 1 404 GLU n 1 405 ASN n 1 406 ARG n 1 407 TYR n 1 408 LYS n 1 409 ILE n 1 410 LEU n 1 411 ASN n 1 412 ASN n 1 413 SER n 1 414 LEU n 1 415 ASN n 1 416 PRO n 1 417 ALA n 1 418 ILE n 1 419 SER n 1 420 GLU n 1 421 ASP n 1 422 ASN n 1 423 ASP n 1 424 PHE n 1 425 ASN n 1 426 THR n 1 427 THR n 1 428 THR n 1 429 ASN n 1 430 THR n 1 431 PHE n 1 432 ILE n 1 433 ASP n 1 434 SER n 1 435 ILE n 1 436 MET n 1 437 ALA n 1 438 GLU n 1 439 ALA n 1 440 ASN n 1 441 ALA n 1 442 ASP n 1 443 ASN n 1 444 GLY n 1 445 ARG n 1 446 PHE n 1 447 MET n 1 448 MET n 1 449 GLU n 1 450 LEU n 1 451 GLY n 1 452 LYS n 1 453 TYR n 1 454 LEU n 1 455 ARG n 1 456 VAL n 1 457 GLY n 1 458 PHE n 1 459 PHE n 1 460 PRO n 1 461 ASP n 1 462 VAL n 1 463 LYS n 1 464 THR n 1 465 THR n 1 466 ILE n 1 467 ASN n 1 468 LEU n 1 469 SER n 1 470 GLY n 1 471 PRO n 1 472 GLU n 1 473 ALA n 1 474 TYR n 1 475 ALA n 1 476 ALA n 1 477 ALA n 1 478 TYR n 1 479 GLN n 1 480 ASP n 1 481 LEU n 1 482 LEU n 1 483 MET n 1 484 PHE n 1 485 LYS n 1 486 GLU n 1 487 GLY n 1 488 SER n 1 489 MET n 1 490 ASN n 1 491 ILE n 1 492 HIS n 1 493 LEU n 1 494 ILE n 1 495 GLU n 1 496 ALA n 1 497 ASP n 1 498 LEU n 1 499 ARG n 1 500 ASN n 1 501 PHE n 1 502 GLU n 1 503 ILE n 1 504 SER n 1 505 LYS n 1 506 THR n 1 507 ASN n 1 508 ILE n 1 509 SER n 1 510 GLN n 1 511 SER n 1 512 THR n 1 513 GLU n 1 514 GLN n 1 515 GLU n 1 516 MET n 1 517 ALA n 1 518 SER n 1 519 LEU n 1 520 TRP n 1 521 SER n 1 522 PHE n 1 523 ASP n 1 524 ASP n 1 525 ALA n 1 526 ARG n 1 527 ALA n 1 528 LYS n 1 529 ALA n 1 530 GLN n 1 531 PHE n 1 532 GLU n 1 533 GLU n 1 534 TYR n 1 535 LYS n 1 536 ARG n 1 537 ASN n 1 538 TYR n 1 539 PHE n 1 540 GLU n 1 541 GLY n 1 542 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'VPI 10463' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CLOSTRIDIUM DIFFICILE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1496 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2BVM 1 ? ? 2BVM ? 2 UNP TOXB_CLODI 1 ? ? P18177 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2BVM A 1 ? 1 ? 2BVM 1 ? 1 ? 1 1 2 2 2BVM A 2 ? 542 ? P18177 1 ? 541 ? 2 542 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2BVM CYS A 59 ? UNP P18177 TYR 58 'engineered mutation' 59 1 1 2BVM GLY A 244 ? UNP P18177 GLU 243 'engineered mutation' 244 2 1 2BVM ALA A 542 ? UNP P18177 SER 541 'engineered mutation' 542 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2BVM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_percent_sol 56.47 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 0.8200 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2BVM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.550 _reflns.number_obs 24594 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low 2.61 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.48000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.400 _reflns_shell.pdbx_redundancy 7.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2BVM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 23770 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.100 _refine.ls_number_reflns_R_free 769 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.B_iso_mean 55.74 _refine.aniso_B[1][1] -1.42000 _refine.aniso_B[2][2] -0.99000 _refine.aniso_B[3][3] 2.40000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2BV1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.474 _refine.pdbx_overall_ESU_R_Free 0.278 _refine.overall_SU_ML 0.218 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 19.100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4421 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 4593 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 4543 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.314 1.967 ? 6136 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.618 5.000 ? 540 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.094 25.809 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.755 15.000 ? 839 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.125 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 673 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 3432 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.198 0.200 ? 2073 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 3174 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.122 0.200 ? 186 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.214 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.009 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.467 1.500 ? 2774 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.820 2.000 ? 4370 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.191 3.000 ? 2007 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.906 4.500 ? 1766 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.55 _refine_ls_shell.d_res_low 2.62 _refine_ls_shell.number_reflns_R_work 1688 _refine_ls_shell.R_factor_R_work 0.2650 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3570 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2BVM _struct.title 'Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP, Glc and manganese ion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2BVM _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, GLYCOSYLTRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 5 ? LYS A 11 ? ASN A 5 LYS A 11 1 ? 7 HELX_P HELX_P2 2 GLU A 21 ? HIS A 35 ? GLU A 21 HIS A 35 1 ? 15 HELX_P HELX_P3 3 THR A 41 ? TYR A 63 ? THR A 41 TYR A 63 1 ? 23 HELX_P HELX_P4 4 ARG A 68 ? ASN A 90 ? ARG A 68 ASN A 90 1 ? 23 HELX_P HELX_P5 5 ASN A 108 ? ASN A 122 ? ASN A 108 ASN A 122 1 ? 15 HELX_P HELX_P6 6 LEU A 137 ? ARG A 158 ? LEU A 137 ARG A 158 1 ? 22 HELX_P HELX_P7 7 ASP A 167 ? ASN A 197 ? ASP A 167 ASN A 197 1 ? 31 HELX_P HELX_P8 8 ILE A 201 ? SER A 215 ? ILE A 201 SER A 215 1 ? 15 HELX_P HELX_P9 9 GLU A 217 ? GLN A 234 ? GLU A 217 GLN A 234 1 ? 18 HELX_P HELX_P10 10 PHE A 243 ? ASN A 248 ? PHE A 243 ASN A 248 1 ? 6 HELX_P HELX_P11 11 SER A 251 ? GLU A 261 ? SER A 251 GLU A 261 1 ? 11 HELX_P HELX_P12 12 ASN A 264 ? GLY A 281 ? ASN A 264 GLY A 281 1 ? 18 HELX_P HELX_P13 13 THR A 308 ? LYS A 324 ? THR A 308 LYS A 324 1 ? 17 HELX_P HELX_P14 14 HIS A 334 ? LEU A 338 ? HIS A 334 LEU A 338 5 ? 5 HELX_P HELX_P15 15 ASP A 339 ? LEU A 350 ? ASP A 339 LEU A 350 1 ? 12 HELX_P HELX_P16 16 ASP A 355 ? ILE A 359 ? ASP A 355 ILE A 359 5 ? 5 HELX_P HELX_P17 17 SER A 393 ? SER A 419 ? SER A 393 SER A 419 1 ? 27 HELX_P HELX_P18 18 ASP A 423 ? ALA A 439 ? ASP A 423 ALA A 439 1 ? 17 HELX_P HELX_P19 19 ASN A 443 ? GLY A 451 ? ASN A 443 GLY A 451 1 ? 9 HELX_P HELX_P20 20 LYS A 452 ? VAL A 456 ? LYS A 452 VAL A 456 5 ? 5 HELX_P HELX_P21 21 THR A 464 ? SER A 469 ? THR A 464 SER A 469 1 ? 6 HELX_P HELX_P22 22 GLY A 470 ? MET A 483 ? GLY A 470 MET A 483 1 ? 14 HELX_P HELX_P23 23 ILE A 494 ? ASN A 500 ? ILE A 494 ASN A 500 1 ? 7 HELX_P HELX_P24 24 SER A 504 ? THR A 506 ? SER A 504 THR A 506 5 ? 3 HELX_P HELX_P25 25 GLU A 513 ? ALA A 517 ? GLU A 513 ALA A 517 5 ? 5 HELX_P HELX_P26 26 ASP A 523 ? GLY A 541 ? ASP A 523 GLY A 541 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 288 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 288 A MN 1542 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc2 metalc ? ? A GLU 515 OE1 ? ? ? 1_555 B MN . MN ? ? A GLU 515 A MN 1542 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc3 metalc ? ? B MN . MN ? ? ? 1_555 C UDP . O3B ? ? A MN 1542 A UDP 1543 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc4 metalc ? ? B MN . MN ? ? ? 1_555 C UDP . O1A ? ? A MN 1542 A UDP 1543 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc5 metalc ? ? B MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 1542 A HOH 2124 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc6 metalc ? ? B MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 1542 A HOH 2125 1_555 ? ? ? ? ? ? ? 2.006 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 163 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 163 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 164 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 164 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 6 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? parallel AB 4 5 ? anti-parallel AB 5 6 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 92 ? PRO A 93 ? THR A 92 PRO A 93 AA 2 GLU A 367 ? ALA A 368 ? GLU A 367 ALA A 368 AB 1 GLY A 237 ? ASP A 239 ? GLY A 237 ASP A 239 AB 2 ASN A 126 ? TYR A 131 ? ASN A 126 TYR A 131 AB 3 ASN A 97 ? VAL A 101 ? ASN A 97 VAL A 101 AB 4 GLY A 282 ? LEU A 285 ? GLY A 282 LEU A 285 AB 5 GLY A 381 ? SER A 389 ? GLY A 381 SER A 389 AB 6 VAL A 373 ? ASN A 378 ? VAL A 373 ASN A 378 AC 1 LEU A 290 ? PRO A 291 ? LEU A 290 PRO A 291 AC 2 ILE A 508 ? SER A 509 ? ILE A 508 SER A 509 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 92 ? N THR A 92 O ALA A 368 ? O ALA A 368 AB 1 2 N ASN A 238 ? N ASN A 238 O VAL A 129 ? O VAL A 129 AB 2 3 N ASN A 128 ? N ASN A 128 O LEU A 98 ? O LEU A 98 AB 3 4 N HIS A 99 ? N HIS A 99 O MET A 283 ? O MET A 283 AB 4 5 N TYR A 284 ? N TYR A 284 O LEU A 387 ? O LEU A 387 AB 5 6 N ILE A 388 ? N ILE A 388 O LYS A 374 ? O LYS A 374 AC 1 2 N LEU A 290 ? N LEU A 290 O SER A 509 ? O SER A 509 # _database_PDB_matrix.entry_id 2BVM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2BVM _atom_sites.fract_transf_matrix[1][1] 0.015203 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010278 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008738 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 TRP 118 118 118 TRP TRP A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 MET 176 176 176 MET MET A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 TYR 180 180 180 TYR TYR A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 ASN 185 185 185 ASN ASN A . n A 1 186 PHE 186 186 186 PHE PHE A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 GLN 193 193 193 GLN GLN A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 THR 208 208 208 THR THR A . n A 1 209 TYR 209 209 209 TYR TYR A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 ASN 212 212 212 ASN ASN A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 TYR 214 214 214 TYR TYR A . n A 1 215 SER 215 215 215 SER SER A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 ILE 218 218 218 ILE ILE A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 ASN 222 222 222 ASN ASN A . n A 1 223 THR 223 223 223 THR THR A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 GLU 227 227 227 GLU GLU A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 ASN 230 230 230 ASN ASN A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 THR 233 233 233 THR THR A . n A 1 234 GLN 234 234 234 GLN GLN A . n A 1 235 ASN 235 235 235 ASN ASN A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ARG 241 241 241 ARG ARG A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 PHE 243 243 243 PHE PHE A . n A 1 244 GLY 244 244 244 GLY GLY A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 PHE 246 246 246 PHE PHE A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 ASN 248 248 248 ASN ASN A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 ASN 253 253 253 ASN ASN A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 TYR 255 255 255 TYR TYR A . n A 1 256 GLU 256 256 256 GLU GLU A . n A 1 257 GLN 257 257 257 GLN GLN A . n A 1 258 GLU 258 258 258 GLU GLU A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 GLU 261 261 261 GLU GLU A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 TRP 263 263 263 TRP TRP A . n A 1 264 ASN 264 264 264 ASN ASN A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 ASP 270 270 270 ASP ASP A . n A 1 271 ILE 271 271 271 ILE ILE A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 ARG 273 273 273 ARG ARG A . n A 1 274 ILE 274 274 274 ILE ILE A . n A 1 275 SER 275 275 275 SER SER A . n A 1 276 ALA 276 276 276 ALA ALA A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 LYS 278 278 278 LYS LYS A . n A 1 279 GLU 279 279 279 GLU GLU A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 GLY 281 281 281 GLY GLY A . n A 1 282 GLY 282 282 282 GLY GLY A . n A 1 283 MET 283 283 283 MET MET A . n A 1 284 TYR 284 284 284 TYR TYR A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 ASP 286 286 286 ASP ASP A . n A 1 287 VAL 287 287 287 VAL VAL A . n A 1 288 ASP 288 288 288 ASP ASP A . n A 1 289 MET 289 289 289 MET MET A . n A 1 290 LEU 290 290 290 LEU LEU A . n A 1 291 PRO 291 291 291 PRO PRO A . n A 1 292 GLY 292 292 292 GLY GLY A . n A 1 293 ILE 293 293 293 ILE ILE A . n A 1 294 GLN 294 294 294 GLN GLN A . n A 1 295 PRO 295 295 295 PRO PRO A . n A 1 296 ASP 296 296 296 ASP ASP A . n A 1 297 LEU 297 297 297 LEU LEU A . n A 1 298 PHE 298 298 298 PHE PHE A . n A 1 299 GLU 299 299 299 GLU GLU A . n A 1 300 SER 300 300 300 SER SER A . n A 1 301 ILE 301 301 301 ILE ILE A . n A 1 302 GLU 302 302 302 GLU GLU A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 PRO 304 304 304 PRO PRO A . n A 1 305 SER 305 305 305 SER SER A . n A 1 306 SER 306 306 306 SER SER A . n A 1 307 VAL 307 307 307 VAL VAL A . n A 1 308 THR 308 308 308 THR THR A . n A 1 309 VAL 309 309 309 VAL VAL A . n A 1 310 ASP 310 310 310 ASP ASP A . n A 1 311 PHE 311 311 311 PHE PHE A . n A 1 312 TRP 312 312 312 TRP TRP A . n A 1 313 GLU 313 313 313 GLU GLU A . n A 1 314 MET 314 314 314 MET MET A . n A 1 315 THR 315 315 315 THR THR A . n A 1 316 LYS 316 316 316 LYS LYS A . n A 1 317 LEU 317 317 317 LEU LEU A . n A 1 318 GLU 318 318 318 GLU GLU A . n A 1 319 ALA 319 319 319 ALA ALA A . n A 1 320 ILE 320 320 320 ILE ILE A . n A 1 321 MET 321 321 321 MET MET A . n A 1 322 LYS 322 322 322 LYS LYS A . n A 1 323 TYR 323 323 323 TYR TYR A . n A 1 324 LYS 324 324 324 LYS LYS A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 TYR 326 326 326 TYR TYR A . n A 1 327 ILE 327 327 327 ILE ILE A . n A 1 328 PRO 328 328 328 PRO PRO A . n A 1 329 GLU 329 329 329 GLU GLU A . n A 1 330 TYR 330 330 330 TYR TYR A . n A 1 331 THR 331 331 331 THR THR A . n A 1 332 SER 332 332 332 SER SER A . n A 1 333 GLU 333 333 333 GLU GLU A . n A 1 334 HIS 334 334 334 HIS HIS A . n A 1 335 PHE 335 335 335 PHE PHE A . n A 1 336 ASP 336 336 336 ASP ASP A . n A 1 337 MET 337 337 337 MET MET A . n A 1 338 LEU 338 338 338 LEU LEU A . n A 1 339 ASP 339 339 339 ASP ASP A . n A 1 340 GLU 340 340 340 GLU GLU A . n A 1 341 GLU 341 341 341 GLU GLU A . n A 1 342 VAL 342 342 342 VAL VAL A . n A 1 343 GLN 343 343 343 GLN GLN A . n A 1 344 SER 344 344 344 SER SER A . n A 1 345 SER 345 345 345 SER SER A . n A 1 346 PHE 346 346 346 PHE PHE A . n A 1 347 GLU 347 347 347 GLU GLU A . n A 1 348 SER 348 348 348 SER SER A . n A 1 349 VAL 349 349 349 VAL VAL A . n A 1 350 LEU 350 350 350 LEU LEU A . n A 1 351 ALA 351 351 351 ALA ALA A . n A 1 352 SER 352 352 352 SER SER A . n A 1 353 LYS 353 353 353 LYS LYS A . n A 1 354 SER 354 354 354 SER SER A . n A 1 355 ASP 355 355 355 ASP ASP A . n A 1 356 LYS 356 356 356 LYS LYS A . n A 1 357 SER 357 357 357 SER SER A . n A 1 358 GLU 358 358 358 GLU GLU A . n A 1 359 ILE 359 359 359 ILE ILE A . n A 1 360 PHE 360 360 360 PHE PHE A . n A 1 361 SER 361 361 361 SER SER A . n A 1 362 SER 362 362 362 SER SER A . n A 1 363 LEU 363 363 363 LEU LEU A . n A 1 364 GLY 364 364 364 GLY GLY A . n A 1 365 ASP 365 365 365 ASP ASP A . n A 1 366 MET 366 366 366 MET MET A . n A 1 367 GLU 367 367 367 GLU GLU A . n A 1 368 ALA 368 368 368 ALA ALA A . n A 1 369 SER 369 369 369 SER SER A . n A 1 370 PRO 370 370 370 PRO PRO A . n A 1 371 LEU 371 371 371 LEU LEU A . n A 1 372 GLU 372 372 372 GLU GLU A . n A 1 373 VAL 373 373 373 VAL VAL A . n A 1 374 LYS 374 374 374 LYS LYS A . n A 1 375 ILE 375 375 375 ILE ILE A . n A 1 376 ALA 376 376 376 ALA ALA A . n A 1 377 PHE 377 377 377 PHE PHE A . n A 1 378 ASN 378 378 378 ASN ASN A . n A 1 379 SER 379 379 379 SER SER A . n A 1 380 LYS 380 380 380 LYS LYS A . n A 1 381 GLY 381 381 381 GLY GLY A . n A 1 382 ILE 382 382 382 ILE ILE A . n A 1 383 ILE 383 383 383 ILE ILE A . n A 1 384 ASN 384 384 384 ASN ASN A . n A 1 385 GLN 385 385 385 GLN GLN A . n A 1 386 GLY 386 386 386 GLY GLY A . n A 1 387 LEU 387 387 387 LEU LEU A . n A 1 388 ILE 388 388 388 ILE ILE A . n A 1 389 SER 389 389 389 SER SER A . n A 1 390 VAL 390 390 390 VAL VAL A . n A 1 391 LYS 391 391 391 LYS LYS A . n A 1 392 ASP 392 392 392 ASP ASP A . n A 1 393 SER 393 393 393 SER SER A . n A 1 394 TYR 394 394 394 TYR TYR A . n A 1 395 CYS 395 395 395 CYS CYS A . n A 1 396 SER 396 396 396 SER SER A . n A 1 397 ASN 397 397 397 ASN ASN A . n A 1 398 LEU 398 398 398 LEU LEU A . n A 1 399 ILE 399 399 399 ILE ILE A . n A 1 400 VAL 400 400 400 VAL VAL A . n A 1 401 LYS 401 401 401 LYS LYS A . n A 1 402 GLN 402 402 402 GLN GLN A . n A 1 403 ILE 403 403 403 ILE ILE A . n A 1 404 GLU 404 404 404 GLU GLU A . n A 1 405 ASN 405 405 405 ASN ASN A . n A 1 406 ARG 406 406 406 ARG ARG A . n A 1 407 TYR 407 407 407 TYR TYR A . n A 1 408 LYS 408 408 408 LYS LYS A . n A 1 409 ILE 409 409 409 ILE ILE A . n A 1 410 LEU 410 410 410 LEU LEU A . n A 1 411 ASN 411 411 411 ASN ASN A . n A 1 412 ASN 412 412 412 ASN ASN A . n A 1 413 SER 413 413 413 SER SER A . n A 1 414 LEU 414 414 414 LEU LEU A . n A 1 415 ASN 415 415 415 ASN ASN A . n A 1 416 PRO 416 416 416 PRO PRO A . n A 1 417 ALA 417 417 417 ALA ALA A . n A 1 418 ILE 418 418 418 ILE ILE A . n A 1 419 SER 419 419 419 SER SER A . n A 1 420 GLU 420 420 420 GLU GLU A . n A 1 421 ASP 421 421 421 ASP ASP A . n A 1 422 ASN 422 422 422 ASN ASN A . n A 1 423 ASP 423 423 423 ASP ASP A . n A 1 424 PHE 424 424 424 PHE PHE A . n A 1 425 ASN 425 425 425 ASN ASN A . n A 1 426 THR 426 426 426 THR THR A . n A 1 427 THR 427 427 427 THR THR A . n A 1 428 THR 428 428 428 THR THR A . n A 1 429 ASN 429 429 429 ASN ASN A . n A 1 430 THR 430 430 430 THR THR A . n A 1 431 PHE 431 431 431 PHE PHE A . n A 1 432 ILE 432 432 432 ILE ILE A . n A 1 433 ASP 433 433 433 ASP ASP A . n A 1 434 SER 434 434 434 SER SER A . n A 1 435 ILE 435 435 435 ILE ILE A . n A 1 436 MET 436 436 436 MET MET A . n A 1 437 ALA 437 437 437 ALA ALA A . n A 1 438 GLU 438 438 438 GLU GLU A . n A 1 439 ALA 439 439 439 ALA ALA A . n A 1 440 ASN 440 440 440 ASN ASN A . n A 1 441 ALA 441 441 441 ALA ALA A . n A 1 442 ASP 442 442 442 ASP ASP A . n A 1 443 ASN 443 443 443 ASN ASN A . n A 1 444 GLY 444 444 444 GLY GLY A . n A 1 445 ARG 445 445 445 ARG ARG A . n A 1 446 PHE 446 446 446 PHE PHE A . n A 1 447 MET 447 447 447 MET MET A . n A 1 448 MET 448 448 448 MET MET A . n A 1 449 GLU 449 449 449 GLU GLU A . n A 1 450 LEU 450 450 450 LEU LEU A . n A 1 451 GLY 451 451 451 GLY GLY A . n A 1 452 LYS 452 452 452 LYS LYS A . n A 1 453 TYR 453 453 453 TYR TYR A . n A 1 454 LEU 454 454 454 LEU LEU A . n A 1 455 ARG 455 455 455 ARG ARG A . n A 1 456 VAL 456 456 456 VAL VAL A . n A 1 457 GLY 457 457 457 GLY GLY A . n A 1 458 PHE 458 458 458 PHE PHE A . n A 1 459 PHE 459 459 459 PHE PHE A . n A 1 460 PRO 460 460 460 PRO PRO A . n A 1 461 ASP 461 461 461 ASP ASP A . n A 1 462 VAL 462 462 462 VAL VAL A . n A 1 463 LYS 463 463 463 LYS LYS A . n A 1 464 THR 464 464 464 THR THR A . n A 1 465 THR 465 465 465 THR THR A . n A 1 466 ILE 466 466 466 ILE ILE A . n A 1 467 ASN 467 467 467 ASN ASN A . n A 1 468 LEU 468 468 468 LEU LEU A . n A 1 469 SER 469 469 469 SER SER A . n A 1 470 GLY 470 470 470 GLY GLY A . n A 1 471 PRO 471 471 471 PRO PRO A . n A 1 472 GLU 472 472 472 GLU GLU A . n A 1 473 ALA 473 473 473 ALA ALA A . n A 1 474 TYR 474 474 474 TYR TYR A . n A 1 475 ALA 475 475 475 ALA ALA A . n A 1 476 ALA 476 476 476 ALA ALA A . n A 1 477 ALA 477 477 477 ALA ALA A . n A 1 478 TYR 478 478 478 TYR TYR A . n A 1 479 GLN 479 479 479 GLN GLN A . n A 1 480 ASP 480 480 480 ASP ASP A . n A 1 481 LEU 481 481 481 LEU LEU A . n A 1 482 LEU 482 482 482 LEU LEU A . n A 1 483 MET 483 483 483 MET MET A . n A 1 484 PHE 484 484 484 PHE PHE A . n A 1 485 LYS 485 485 485 LYS LYS A . n A 1 486 GLU 486 486 486 GLU GLU A . n A 1 487 GLY 487 487 487 GLY GLY A . n A 1 488 SER 488 488 488 SER SER A . n A 1 489 MET 489 489 489 MET MET A . n A 1 490 ASN 490 490 490 ASN ASN A . n A 1 491 ILE 491 491 491 ILE ILE A . n A 1 492 HIS 492 492 492 HIS HIS A . n A 1 493 LEU 493 493 493 LEU LEU A . n A 1 494 ILE 494 494 494 ILE ILE A . n A 1 495 GLU 495 495 495 GLU GLU A . n A 1 496 ALA 496 496 496 ALA ALA A . n A 1 497 ASP 497 497 497 ASP ASP A . n A 1 498 LEU 498 498 498 LEU LEU A . n A 1 499 ARG 499 499 499 ARG ARG A . n A 1 500 ASN 500 500 500 ASN ASN A . n A 1 501 PHE 501 501 501 PHE PHE A . n A 1 502 GLU 502 502 502 GLU GLU A . n A 1 503 ILE 503 503 503 ILE ILE A . n A 1 504 SER 504 504 504 SER SER A . n A 1 505 LYS 505 505 505 LYS LYS A . n A 1 506 THR 506 506 506 THR THR A . n A 1 507 ASN 507 507 507 ASN ASN A . n A 1 508 ILE 508 508 508 ILE ILE A . n A 1 509 SER 509 509 509 SER SER A . n A 1 510 GLN 510 510 510 GLN GLN A . n A 1 511 SER 511 511 511 SER SER A . n A 1 512 THR 512 512 512 THR THR A . n A 1 513 GLU 513 513 513 GLU GLU A . n A 1 514 GLN 514 514 514 GLN GLN A . n A 1 515 GLU 515 515 515 GLU GLU A . n A 1 516 MET 516 516 516 MET MET A . n A 1 517 ALA 517 517 517 ALA ALA A . n A 1 518 SER 518 518 518 SER SER A . n A 1 519 LEU 519 519 519 LEU LEU A . n A 1 520 TRP 520 520 520 TRP TRP A . n A 1 521 SER 521 521 521 SER SER A . n A 1 522 PHE 522 522 522 PHE PHE A . n A 1 523 ASP 523 523 523 ASP ASP A . n A 1 524 ASP 524 524 524 ASP ASP A . n A 1 525 ALA 525 525 525 ALA ALA A . n A 1 526 ARG 526 526 526 ARG ARG A . n A 1 527 ALA 527 527 527 ALA ALA A . n A 1 528 LYS 528 528 528 LYS LYS A . n A 1 529 ALA 529 529 529 ALA ALA A . n A 1 530 GLN 530 530 530 GLN GLN A . n A 1 531 PHE 531 531 531 PHE PHE A . n A 1 532 GLU 532 532 532 GLU GLU A . n A 1 533 GLU 533 533 533 GLU GLU A . n A 1 534 TYR 534 534 534 TYR TYR A . n A 1 535 LYS 535 535 535 LYS LYS A . n A 1 536 ARG 536 536 536 ARG ARG A . n A 1 537 ASN 537 537 537 ASN ASN A . n A 1 538 TYR 538 538 538 TYR TYR A . n A 1 539 PHE 539 539 539 PHE PHE A . n A 1 540 GLU 540 540 540 GLU GLU A . n A 1 541 GLY 541 541 541 GLY GLY A . n A 1 542 ALA 542 542 542 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 1542 1542 MN MN A . C 3 UDP 1 1543 1543 UDP UDP A . D 4 GLC 1 1544 1544 GLC GLC A . E 5 SO4 1 1545 1545 SO4 SO4 A . F 6 HOH 1 2001 2001 HOH HOH A . F 6 HOH 2 2002 2002 HOH HOH A . F 6 HOH 3 2003 2003 HOH HOH A . F 6 HOH 4 2004 2004 HOH HOH A . F 6 HOH 5 2005 2005 HOH HOH A . F 6 HOH 6 2006 2006 HOH HOH A . F 6 HOH 7 2007 2007 HOH HOH A . F 6 HOH 8 2008 2008 HOH HOH A . F 6 HOH 9 2009 2009 HOH HOH A . F 6 HOH 10 2010 2010 HOH HOH A . F 6 HOH 11 2011 2011 HOH HOH A . F 6 HOH 12 2012 2012 HOH HOH A . F 6 HOH 13 2013 2013 HOH HOH A . F 6 HOH 14 2014 2014 HOH HOH A . F 6 HOH 15 2015 2015 HOH HOH A . F 6 HOH 16 2016 2016 HOH HOH A . F 6 HOH 17 2017 2017 HOH HOH A . F 6 HOH 18 2018 2018 HOH HOH A . F 6 HOH 19 2019 2019 HOH HOH A . F 6 HOH 20 2020 2020 HOH HOH A . F 6 HOH 21 2021 2021 HOH HOH A . F 6 HOH 22 2022 2022 HOH HOH A . F 6 HOH 23 2023 2023 HOH HOH A . F 6 HOH 24 2024 2024 HOH HOH A . F 6 HOH 25 2025 2025 HOH HOH A . F 6 HOH 26 2026 2026 HOH HOH A . F 6 HOH 27 2027 2027 HOH HOH A . F 6 HOH 28 2028 2028 HOH HOH A . F 6 HOH 29 2029 2029 HOH HOH A . F 6 HOH 30 2030 2030 HOH HOH A . F 6 HOH 31 2031 2031 HOH HOH A . F 6 HOH 32 2032 2032 HOH HOH A . F 6 HOH 33 2033 2033 HOH HOH A . F 6 HOH 34 2034 2034 HOH HOH A . F 6 HOH 35 2035 2035 HOH HOH A . F 6 HOH 36 2036 2036 HOH HOH A . F 6 HOH 37 2037 2037 HOH HOH A . F 6 HOH 38 2038 2038 HOH HOH A . F 6 HOH 39 2039 2039 HOH HOH A . F 6 HOH 40 2040 2040 HOH HOH A . F 6 HOH 41 2041 2041 HOH HOH A . F 6 HOH 42 2042 2042 HOH HOH A . F 6 HOH 43 2043 2043 HOH HOH A . F 6 HOH 44 2044 2044 HOH HOH A . F 6 HOH 45 2045 2045 HOH HOH A . F 6 HOH 46 2046 2046 HOH HOH A . F 6 HOH 47 2047 2047 HOH HOH A . F 6 HOH 48 2048 2048 HOH HOH A . F 6 HOH 49 2049 2049 HOH HOH A . F 6 HOH 50 2050 2050 HOH HOH A . F 6 HOH 51 2051 2051 HOH HOH A . F 6 HOH 52 2052 2052 HOH HOH A . F 6 HOH 53 2053 2053 HOH HOH A . F 6 HOH 54 2054 2054 HOH HOH A . F 6 HOH 55 2055 2055 HOH HOH A . F 6 HOH 56 2056 2056 HOH HOH A . F 6 HOH 57 2057 2057 HOH HOH A . F 6 HOH 58 2058 2058 HOH HOH A . F 6 HOH 59 2059 2059 HOH HOH A . F 6 HOH 60 2060 2060 HOH HOH A . F 6 HOH 61 2061 2061 HOH HOH A . F 6 HOH 62 2062 2062 HOH HOH A . F 6 HOH 63 2063 2063 HOH HOH A . F 6 HOH 64 2064 2064 HOH HOH A . F 6 HOH 65 2065 2065 HOH HOH A . F 6 HOH 66 2066 2066 HOH HOH A . F 6 HOH 67 2067 2067 HOH HOH A . F 6 HOH 68 2068 2068 HOH HOH A . F 6 HOH 69 2069 2069 HOH HOH A . F 6 HOH 70 2070 2070 HOH HOH A . F 6 HOH 71 2071 2071 HOH HOH A . F 6 HOH 72 2072 2072 HOH HOH A . F 6 HOH 73 2073 2073 HOH HOH A . F 6 HOH 74 2074 2074 HOH HOH A . F 6 HOH 75 2075 2075 HOH HOH A . F 6 HOH 76 2076 2076 HOH HOH A . F 6 HOH 77 2077 2077 HOH HOH A . F 6 HOH 78 2078 2078 HOH HOH A . F 6 HOH 79 2079 2079 HOH HOH A . F 6 HOH 80 2080 2080 HOH HOH A . F 6 HOH 81 2081 2081 HOH HOH A . F 6 HOH 82 2082 2082 HOH HOH A . F 6 HOH 83 2083 2083 HOH HOH A . F 6 HOH 84 2084 2084 HOH HOH A . F 6 HOH 85 2085 2085 HOH HOH A . F 6 HOH 86 2086 2086 HOH HOH A . F 6 HOH 87 2087 2087 HOH HOH A . F 6 HOH 88 2088 2088 HOH HOH A . F 6 HOH 89 2089 2089 HOH HOH A . F 6 HOH 90 2090 2090 HOH HOH A . F 6 HOH 91 2091 2091 HOH HOH A . F 6 HOH 92 2092 2092 HOH HOH A . F 6 HOH 93 2093 2093 HOH HOH A . F 6 HOH 94 2094 2094 HOH HOH A . F 6 HOH 95 2095 2095 HOH HOH A . F 6 HOH 96 2096 2096 HOH HOH A . F 6 HOH 97 2097 2097 HOH HOH A . F 6 HOH 98 2098 2098 HOH HOH A . F 6 HOH 99 2099 2099 HOH HOH A . F 6 HOH 100 2100 2100 HOH HOH A . F 6 HOH 101 2101 2101 HOH HOH A . F 6 HOH 102 2102 2102 HOH HOH A . F 6 HOH 103 2103 2103 HOH HOH A . F 6 HOH 104 2104 2104 HOH HOH A . F 6 HOH 105 2105 2105 HOH HOH A . F 6 HOH 106 2106 2106 HOH HOH A . F 6 HOH 107 2107 2107 HOH HOH A . F 6 HOH 108 2108 2108 HOH HOH A . F 6 HOH 109 2109 2109 HOH HOH A . F 6 HOH 110 2110 2110 HOH HOH A . F 6 HOH 111 2111 2111 HOH HOH A . F 6 HOH 112 2112 2112 HOH HOH A . F 6 HOH 113 2113 2113 HOH HOH A . F 6 HOH 114 2114 2114 HOH HOH A . F 6 HOH 115 2115 2115 HOH HOH A . F 6 HOH 116 2116 2116 HOH HOH A . F 6 HOH 117 2117 2117 HOH HOH A . F 6 HOH 118 2118 2118 HOH HOH A . F 6 HOH 119 2119 2119 HOH HOH A . F 6 HOH 120 2120 2120 HOH HOH A . F 6 HOH 121 2121 2121 HOH HOH A . F 6 HOH 122 2122 2122 HOH HOH A . F 6 HOH 123 2123 2123 HOH HOH A . F 6 HOH 124 2124 2124 HOH HOH A . F 6 HOH 125 2125 2125 HOH HOH A . F 6 HOH 126 2126 2126 HOH HOH A . F 6 HOH 127 2127 2127 HOH HOH A . F 6 HOH 128 2128 2128 HOH HOH A . F 6 HOH 129 2129 2129 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 288 ? A ASP 288 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 OE1 ? A GLU 515 ? A GLU 515 ? 1_555 90.2 ? 2 OD2 ? A ASP 288 ? A ASP 288 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O3B ? C UDP . ? A UDP 1543 ? 1_555 163.1 ? 3 OE1 ? A GLU 515 ? A GLU 515 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O3B ? C UDP . ? A UDP 1543 ? 1_555 105.7 ? 4 OD2 ? A ASP 288 ? A ASP 288 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O1A ? C UDP . ? A UDP 1543 ? 1_555 82.9 ? 5 OE1 ? A GLU 515 ? A GLU 515 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O1A ? C UDP . ? A UDP 1543 ? 1_555 170.4 ? 6 O3B ? C UDP . ? A UDP 1543 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O1A ? C UDP . ? A UDP 1543 ? 1_555 80.6 ? 7 OD2 ? A ASP 288 ? A ASP 288 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2124 ? 1_555 92.4 ? 8 OE1 ? A GLU 515 ? A GLU 515 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2124 ? 1_555 95.3 ? 9 O3B ? C UDP . ? A UDP 1543 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2124 ? 1_555 92.0 ? 10 O1A ? C UDP . ? A UDP 1543 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2124 ? 1_555 91.6 ? 11 OD2 ? A ASP 288 ? A ASP 288 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2125 ? 1_555 90.9 ? 12 OE1 ? A GLU 515 ? A GLU 515 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2125 ? 1_555 91.5 ? 13 O3B ? C UDP . ? A UDP 1543 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2125 ? 1_555 83.0 ? 14 O1A ? C UDP . ? A UDP 1543 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2125 ? 1_555 82.0 ? 15 O ? F HOH . ? A HOH 2124 ? 1_555 MN ? B MN . ? A MN 1542 ? 1_555 O ? F HOH . ? A HOH 2125 ? 1_555 172.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2023-12-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_entity_nonpoly 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen 10 4 'Structure model' chem_comp 11 4 'Structure model' chem_comp_atom 12 4 'Structure model' chem_comp_bond 13 4 'Structure model' database_2 14 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_database_status.status_code_sf' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.value' 19 3 'Structure model' '_struct_conn.pdbx_dist_value' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 32 4 'Structure model' '_chem_comp.pdbx_synonyms' 33 4 'Structure model' '_database_2.pdbx_DOI' 34 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 16.1679 _pdbx_refine_tls.origin_y 0.2274 _pdbx_refine_tls.origin_z 50.5782 _pdbx_refine_tls.T[1][1] -0.1572 _pdbx_refine_tls.T[2][2] -0.1487 _pdbx_refine_tls.T[3][3] -0.1749 _pdbx_refine_tls.T[1][2] -0.0498 _pdbx_refine_tls.T[1][3] -0.0456 _pdbx_refine_tls.T[2][3] -0.0285 _pdbx_refine_tls.L[1][1] 1.6209 _pdbx_refine_tls.L[2][2] 2.6198 _pdbx_refine_tls.L[3][3] 2.0335 _pdbx_refine_tls.L[1][2] -0.1596 _pdbx_refine_tls.L[1][3] 0.0430 _pdbx_refine_tls.L[2][3] -0.0209 _pdbx_refine_tls.S[1][1] 0.0189 _pdbx_refine_tls.S[1][2] 0.1141 _pdbx_refine_tls.S[1][3] 0.0122 _pdbx_refine_tls.S[2][1] -0.1368 _pdbx_refine_tls.S[2][2] -0.0316 _pdbx_refine_tls.S[2][3] -0.0305 _pdbx_refine_tls.S[3][1] -0.3089 _pdbx_refine_tls.S[3][2] 0.0937 _pdbx_refine_tls.S[3][3] 0.0127 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 543 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2BVM _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, TYR 58 TO CYS ENGINEERED RESIDUE IN CHAIN A, GLU 243 TO GLY ENGINEERED RESIDUE IN CHAIN A, SER 541 TO ALA ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'STRUCTURE OF MUTANT Y58C-E241G-S541A' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 1.442 1.326 0.116 0.013 N 2 1 CG A GLU 10 ? ? CD A GLU 10 ? ? 1.808 1.515 0.293 0.015 N 3 1 CD A GLU 10 ? ? OE2 A GLU 10 ? ? 1.396 1.252 0.144 0.011 N 4 1 C A GLU 10 ? ? O A GLU 10 ? ? 1.345 1.229 0.116 0.019 N 5 1 CE A LYS 70 ? ? NZ A LYS 70 ? ? 1.667 1.486 0.181 0.025 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 115.59 120.30 -4.71 0.50 N 2 1 OE1 A GLU 10 ? ? CD A GLU 10 ? ? OE2 A GLU 10 ? ? 136.15 123.30 12.85 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -64.64 -179.56 2 1 VAL A 4 ? ? -20.21 130.43 3 1 SER A 38 ? ? -81.32 49.36 4 1 GLU A 39 ? ? -137.36 -31.77 5 1 LYS A 65 ? ? -102.79 58.51 6 1 PHE A 157 ? ? -75.64 -83.17 7 1 ARG A 158 ? ? 29.58 -59.06 8 1 PRO A 164 ? ? -82.89 -82.41 9 1 ARG A 165 ? ? -102.57 72.02 10 1 GLU A 329 ? ? 59.19 19.22 11 1 LEU A 350 ? ? -65.41 7.57 12 1 SER A 352 ? ? -69.27 0.05 13 1 ASP A 421 ? ? -100.16 65.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ALA 542 ? CA ? A ALA 542 CA 2 1 Y 1 A ALA 542 ? C ? A ALA 542 C 3 1 Y 1 A ALA 542 ? O ? A ALA 542 O 4 1 Y 1 A ALA 542 ? CB ? A ALA 542 CB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLC C1 C N S 88 GLC C2 C N R 89 GLC C3 C N S 90 GLC C4 C N S 91 GLC C5 C N R 92 GLC C6 C N N 93 GLC O1 O N N 94 GLC O2 O N N 95 GLC O3 O N N 96 GLC O4 O N N 97 GLC O5 O N N 98 GLC O6 O N N 99 GLC H1 H N N 100 GLC H2 H N N 101 GLC H3 H N N 102 GLC H4 H N N 103 GLC H5 H N N 104 GLC H61 H N N 105 GLC H62 H N N 106 GLC HO1 H N N 107 GLC HO2 H N N 108 GLC HO3 H N N 109 GLC HO4 H N N 110 GLC HO6 H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 MN MN MN N N 274 PHE N N N N 275 PHE CA C N S 276 PHE C C N N 277 PHE O O N N 278 PHE CB C N N 279 PHE CG C Y N 280 PHE CD1 C Y N 281 PHE CD2 C Y N 282 PHE CE1 C Y N 283 PHE CE2 C Y N 284 PHE CZ C Y N 285 PHE OXT O N N 286 PHE H H N N 287 PHE H2 H N N 288 PHE HA H N N 289 PHE HB2 H N N 290 PHE HB3 H N N 291 PHE HD1 H N N 292 PHE HD2 H N N 293 PHE HE1 H N N 294 PHE HE2 H N N 295 PHE HZ H N N 296 PHE HXT H N N 297 PRO N N N N 298 PRO CA C N S 299 PRO C C N N 300 PRO O O N N 301 PRO CB C N N 302 PRO CG C N N 303 PRO CD C N N 304 PRO OXT O N N 305 PRO H H N N 306 PRO HA H N N 307 PRO HB2 H N N 308 PRO HB3 H N N 309 PRO HG2 H N N 310 PRO HG3 H N N 311 PRO HD2 H N N 312 PRO HD3 H N N 313 PRO HXT H N N 314 SER N N N N 315 SER CA C N S 316 SER C C N N 317 SER O O N N 318 SER CB C N N 319 SER OG O N N 320 SER OXT O N N 321 SER H H N N 322 SER H2 H N N 323 SER HA H N N 324 SER HB2 H N N 325 SER HB3 H N N 326 SER HG H N N 327 SER HXT H N N 328 SO4 S S N N 329 SO4 O1 O N N 330 SO4 O2 O N N 331 SO4 O3 O N N 332 SO4 O4 O N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 UDP N1 N N N 402 UDP C2 C N N 403 UDP N3 N N N 404 UDP C4 C N N 405 UDP C5 C N N 406 UDP C6 C N N 407 UDP O2 O N N 408 UDP O4 O N N 409 UDP "C1'" C N R 410 UDP "C2'" C N R 411 UDP "O2'" O N N 412 UDP "C3'" C N S 413 UDP "C4'" C N R 414 UDP "O4'" O N N 415 UDP "O3'" O N N 416 UDP "C5'" C N N 417 UDP "O5'" O N N 418 UDP PA P N N 419 UDP O1A O N N 420 UDP O2A O N N 421 UDP O3A O N N 422 UDP PB P N N 423 UDP O1B O N N 424 UDP O2B O N N 425 UDP O3B O N N 426 UDP HN3 H N N 427 UDP H5 H N N 428 UDP H6 H N N 429 UDP "H1'" H N N 430 UDP "H2'" H N N 431 UDP "HO2'" H N N 432 UDP "H3'" H N N 433 UDP "H4'" H N N 434 UDP "HO3'" H N N 435 UDP "H5'1" H N N 436 UDP "H5'2" H N N 437 UDP HOA2 H N N 438 UDP HOB2 H N N 439 UDP HOB3 H N N 440 VAL N N N N 441 VAL CA C N S 442 VAL C C N N 443 VAL O O N N 444 VAL CB C N N 445 VAL CG1 C N N 446 VAL CG2 C N N 447 VAL OXT O N N 448 VAL H H N N 449 VAL H2 H N N 450 VAL HA H N N 451 VAL HB H N N 452 VAL HG11 H N N 453 VAL HG12 H N N 454 VAL HG13 H N N 455 VAL HG21 H N N 456 VAL HG22 H N N 457 VAL HG23 H N N 458 VAL HXT H N N 459 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLC C1 C2 sing N N 83 GLC C1 O1 sing N N 84 GLC C1 O5 sing N N 85 GLC C1 H1 sing N N 86 GLC C2 C3 sing N N 87 GLC C2 O2 sing N N 88 GLC C2 H2 sing N N 89 GLC C3 C4 sing N N 90 GLC C3 O3 sing N N 91 GLC C3 H3 sing N N 92 GLC C4 C5 sing N N 93 GLC C4 O4 sing N N 94 GLC C4 H4 sing N N 95 GLC C5 C6 sing N N 96 GLC C5 O5 sing N N 97 GLC C5 H5 sing N N 98 GLC C6 O6 sing N N 99 GLC C6 H61 sing N N 100 GLC C6 H62 sing N N 101 GLC O1 HO1 sing N N 102 GLC O2 HO2 sing N N 103 GLC O3 HO3 sing N N 104 GLC O4 HO4 sing N N 105 GLC O6 HO6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 SO4 S O1 doub N N 314 SO4 S O2 doub N N 315 SO4 S O3 sing N N 316 SO4 S O4 sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 UDP N1 C2 sing N N 386 UDP N1 C6 sing N N 387 UDP N1 "C1'" sing N N 388 UDP C2 N3 sing N N 389 UDP C2 O2 doub N N 390 UDP N3 C4 sing N N 391 UDP N3 HN3 sing N N 392 UDP C4 C5 sing N N 393 UDP C4 O4 doub N N 394 UDP C5 C6 doub N N 395 UDP C5 H5 sing N N 396 UDP C6 H6 sing N N 397 UDP "C1'" "C2'" sing N N 398 UDP "C1'" "O4'" sing N N 399 UDP "C1'" "H1'" sing N N 400 UDP "C2'" "O2'" sing N N 401 UDP "C2'" "C3'" sing N N 402 UDP "C2'" "H2'" sing N N 403 UDP "O2'" "HO2'" sing N N 404 UDP "C3'" "C4'" sing N N 405 UDP "C3'" "O3'" sing N N 406 UDP "C3'" "H3'" sing N N 407 UDP "C4'" "O4'" sing N N 408 UDP "C4'" "C5'" sing N N 409 UDP "C4'" "H4'" sing N N 410 UDP "O3'" "HO3'" sing N N 411 UDP "C5'" "O5'" sing N N 412 UDP "C5'" "H5'1" sing N N 413 UDP "C5'" "H5'2" sing N N 414 UDP "O5'" PA sing N N 415 UDP PA O1A doub N N 416 UDP PA O2A sing N N 417 UDP PA O3A sing N N 418 UDP O2A HOA2 sing N N 419 UDP O3A PB sing N N 420 UDP PB O1B doub N N 421 UDP PB O2B sing N N 422 UDP PB O3B sing N N 423 UDP O2B HOB2 sing N N 424 UDP O3B HOB3 sing N N 425 VAL N CA sing N N 426 VAL N H sing N N 427 VAL N H2 sing N N 428 VAL CA C sing N N 429 VAL CA CB sing N N 430 VAL CA HA sing N N 431 VAL C O doub N N 432 VAL C OXT sing N N 433 VAL CB CG1 sing N N 434 VAL CB CG2 sing N N 435 VAL CB HB sing N N 436 VAL CG1 HG11 sing N N 437 VAL CG1 HG12 sing N N 438 VAL CG1 HG13 sing N N 439 VAL CG2 HG21 sing N N 440 VAL CG2 HG22 sing N N 441 VAL CG2 HG23 sing N N 442 VAL OXT HXT sing N N 443 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 "URIDINE-5'-DIPHOSPHATE" UDP 4 alpha-D-glucopyranose GLC 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2BV1 _pdbx_initial_refinement_model.details 'PDB ENTRY 2BV1' #