HEADER ELONGATION FACTOR 30-JUN-05 2BVN TITLE E. COLI EF-TU:GDPNP IN COMPLEX WITH THE ANTIBIOTIC ENACYLOXIN IIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EF-TU, P-43; COMPND 5 EC: 3.6.1.48 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511693; SOURCE 4 STRAIN: BL21 KEYWDS TRANSLATION, ELONGATION FACTOR, GTPASE, ANTIBIOTIC, GTP-BINDING, KEYWDS 2 PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR A.PARMEGGIANI,I.M.KRAB,T.WATANABE,R.C.NIELSEN,C.DAHLBERG,J.NYBORG, AUTHOR 2 P.NISSEN REVDAT 7 13-DEC-23 2BVN 1 LINK REVDAT 6 15-MAY-19 2BVN 1 REMARK REVDAT 5 08-MAY-19 2BVN 1 REMARK REVDAT 4 17-JAN-18 2BVN 1 REMARK REVDAT 3 24-FEB-09 2BVN 1 VERSN REVDAT 2 01-FEB-06 2BVN 1 JRNL REVDAT 1 01-SEP-05 2BVN 0 JRNL AUTH A.PARMEGGIANI,I.M.KRAB,T.WATANABE,R.C.NIELSEN,C.DAHLBERG, JRNL AUTH 2 J.NYBORG,P.NISSEN JRNL TITL ENACYLOXIN IIA PINPOINTS A BINDING POCKET OF ELONGATION JRNL TITL 2 FACTOR TU FOR DEVELOPMENT OF NOVEL ANTIBIOTICS. JRNL REF J.BIOL.CHEM. V. 281 2893 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16257965 JRNL DOI 10.1074/JBC.M505951200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3463299.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1133 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE : 0.4300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 160 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.04000 REMARK 3 B22 (A**2) : 6.04000 REMARK 3 B33 (A**2) : -12.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.410 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.850 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.280 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.130 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 33.70 REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1290024676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROL PROTEIN SOLUTION MIXED WITH 1 REMARK 280 MICROL RESERVOIR SOLUTION (450 MM NACL. 22% PEG6000, 6% GLYCEROL, REMARK 280 7 MM MGCL2, 100 MM TRIS-HCL PH 7.5), SITTING DROP 19 DEG. C, PH REMARK 280 6.80, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.86500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.03500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 251.79750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.03500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.93250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.03500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 251.79750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.03500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.93250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 167.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 THR A 8 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 ARG A 44 REMARK 465 ALA A 45 REMARK 465 PHE A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 ILE A 49 REMARK 465 ASP A 50 REMARK 465 ASN A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 GLU A 54 REMARK 465 SER B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 5 REMARK 465 GLY B 41 REMARK 465 ALA B 42 REMARK 465 ALA B 43 REMARK 465 ARG B 44 REMARK 465 ALA B 45 REMARK 465 PHE B 46 REMARK 465 ASP B 47 REMARK 465 GLN B 48 REMARK 465 ILE B 49 REMARK 465 ASP B 50 REMARK 465 ASN B 51 REMARK 465 ALA B 52 REMARK 465 PRO B 53 REMARK 465 GLU B 54 REMARK 465 GLU B 55 REMARK 465 LYS B 56 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 163 65.46 -66.16 REMARK 500 GLU A 215 -70.93 -104.81 REMARK 500 ARG A 223 -34.81 -132.54 REMARK 500 ILE A 247 -69.02 66.96 REMARK 500 LYS A 263 150.05 176.29 REMARK 500 ARG A 333 -112.80 55.11 REMARK 500 LEU A 392 -72.09 -122.67 REMARK 500 ARG B 58 -60.16 -120.01 REMARK 500 ILE B 60 -28.48 85.01 REMARK 500 ASP B 161 33.11 70.18 REMARK 500 PRO B 163 66.59 -66.08 REMARK 500 GLU B 215 -74.11 -106.17 REMARK 500 ILE B 247 -69.37 66.20 REMARK 500 LYS B 324 151.11 -49.44 REMARK 500 ARG B 333 -115.03 54.91 REMARK 500 LEU B 392 -73.52 -122.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1395 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 GNP A1394 O1G 165.8 REMARK 620 3 GNP A1394 O2B 84.3 96.5 REMARK 620 4 HOH A2003 O 70.1 95.8 84.5 REMARK 620 5 HOH A2004 O 84.1 93.0 166.5 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1395 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 OG1 REMARK 620 2 GNP B1394 O2B 89.5 REMARK 620 3 GNP B1394 O1G 170.1 90.4 REMARK 620 4 HOH B2005 O 84.7 89.2 105.2 REMARK 620 5 HOH B2006 O 85.0 174.3 94.9 91.6 REMARK 620 6 HOH B2007 O 78.7 91.3 91.4 163.4 86.3 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AD" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BD" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A1394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENX A1396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B1394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENX B1396 DBREF 2BVN A 1 393 UNP P0A6N1 EFTU_ECOLI 1 393 DBREF 2BVN B 1 393 UNP P0A6N1 EFTU_ECOLI 1 393 SEQRES 1 A 393 SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN SEQRES 2 A 393 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 393 LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR SEQRES 4 A 393 GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN ALA SEQRES 5 A 393 PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SER SEQRES 6 A 393 HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS SEQRES 7 A 393 VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET SEQRES 8 A 393 ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL SEQRES 9 A 393 VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU SEQRES 10 A 393 HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE SEQRES 11 A 393 ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU SEQRES 12 A 393 GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU SEQRES 13 A 393 LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE SEQRES 14 A 393 VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA SEQRES 15 A 393 GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU SEQRES 16 A 393 ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS SEQRES 17 A 393 PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER SEQRES 18 A 393 GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY SEQRES 19 A 393 ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE SEQRES 20 A 393 LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET SEQRES 21 A 393 PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN SEQRES 22 A 393 VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE SEQRES 23 A 393 GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS SEQRES 24 A 393 PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER SEQRES 25 A 393 LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY SEQRES 26 A 393 TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR SEQRES 27 A 393 GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET SEQRES 28 A 393 PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS SEQRES 29 A 393 PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG SEQRES 30 A 393 GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS SEQRES 31 A 393 VAL LEU SER SEQRES 1 B 393 SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN SEQRES 2 B 393 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 B 393 LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR SEQRES 4 B 393 GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN ALA SEQRES 5 B 393 PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SER SEQRES 6 B 393 HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS SEQRES 7 B 393 VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET SEQRES 8 B 393 ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL SEQRES 9 B 393 VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU SEQRES 10 B 393 HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE SEQRES 11 B 393 ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU SEQRES 12 B 393 GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU SEQRES 13 B 393 LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE SEQRES 14 B 393 VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA SEQRES 15 B 393 GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU SEQRES 16 B 393 ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS SEQRES 17 B 393 PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER SEQRES 18 B 393 GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY SEQRES 19 B 393 ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE SEQRES 20 B 393 LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET SEQRES 21 B 393 PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN SEQRES 22 B 393 VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE SEQRES 23 B 393 GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS SEQRES 24 B 393 PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER SEQRES 25 B 393 LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY SEQRES 26 B 393 TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR SEQRES 27 B 393 GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET SEQRES 28 B 393 PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS SEQRES 29 B 393 PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG SEQRES 30 B 393 GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS SEQRES 31 B 393 VAL LEU SER HET GNP A1394 32 HET MG A1395 1 HET ENX A1396 47 HET GNP B1394 32 HET MG B1395 1 HET ENX B1396 47 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM ENX ENACYLOXIN IIA FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 ENX 2(C33 H45 CL2 N O11) FORMUL 9 HOH *181(H2 O) HELIX 1 1 GLY A 23 GLY A 40 1 18 HELIX 2 2 GLY A 59 ASN A 63 5 5 HELIX 3 3 HIS A 84 ASP A 86 5 3 HELIX 4 4 TYR A 87 ALA A 96 1 10 HELIX 5 5 MET A 112 GLY A 126 1 15 HELIX 6 6 LYS A 136 VAL A 140 5 5 HELIX 7 7 ASP A 142 TYR A 160 1 19 HELIX 8 8 SER A 173 GLU A 179 1 7 HELIX 9 9 ASP A 181 ILE A 199 1 19 HELIX 10 10 LYS A 282 ILE A 286 5 5 HELIX 11 11 SER A 312 GLY A 316 5 5 HELIX 12 12 GLY B 23 GLY B 40 1 18 HELIX 13 13 HIS B 84 ASP B 86 5 3 HELIX 14 14 TYR B 87 ALA B 96 1 10 HELIX 15 15 MET B 112 GLY B 126 1 15 HELIX 16 16 LYS B 136 VAL B 140 5 5 HELIX 17 17 ASP B 142 TYR B 160 1 19 HELIX 18 18 SER B 173 GLU B 179 1 7 HELIX 19 19 ASP B 181 ILE B 199 1 19 HELIX 20 20 LYS B 282 ILE B 286 5 5 HELIX 21 21 SER B 312 GLY B 316 5 5 SHEET 1 AA 6 HIS A 66 ASP A 70 0 SHEET 2 AA 6 HIS A 75 ASP A 80 -1 O TYR A 76 N TYR A 69 SHEET 3 AA 6 HIS A 11 ILE A 17 1 O VAL A 12 N ALA A 77 SHEET 4 AA 6 ALA A 101 ALA A 106 1 O ILE A 102 N ILE A 17 SHEET 5 AA 6 ILE A 130 ASN A 135 1 O ILE A 131 N LEU A 103 SHEET 6 AA 6 ILE A 169 ARG A 171 1 O VAL A 170 N LEU A 134 SHEET 1 AB 7 LEU A 211 PRO A 213 0 SHEET 2 AB 7 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 3 AB 7 GLU A 241 VAL A 245 -1 O GLU A 243 N ALA A 293 SHEET 4 AB 7 GLN A 251 MET A 260 -1 O GLN A 251 N ILE A 244 SHEET 5 AB 7 ASN A 273 ARG A 279 -1 O GLY A 275 N GLU A 259 SHEET 6 AB 7 GLY A 224 ARG A 230 -1 O THR A 225 N LEU A 278 SHEET 7 AB 7 VAL A 217 ILE A 220 -1 O PHE A 218 N VAL A 226 SHEET 1 AC 5 LEU A 211 PRO A 213 0 SHEET 2 AC 5 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 3 AC 5 GLU A 241 VAL A 245 -1 O GLU A 243 N ALA A 293 SHEET 4 AC 5 GLN A 251 MET A 260 -1 O GLN A 251 N ILE A 244 SHEET 5 AC 5 LYS A 263 LEU A 265 -1 O LYS A 263 N MET A 260 SHEET 1 AD 2 ILE A 235 LYS A 237 0 SHEET 2 AD 2 GLU A 267 ARG A 269 -1 O GLY A 268 N ILE A 236 SHEET 1 AE 7 LYS A 299 ILE A 310 0 SHEET 2 AE 7 ASN A 355 MET A 368 -1 O ILE A 356 N VAL A 308 SHEET 3 AE 7 THR A 335 GLU A 342 -1 O THR A 338 N ILE A 363 SHEET 4 AE 7 GLN A 329 PHE A 332 -1 O PHE A 330 N VAL A 337 SHEET 5 AE 7 ARG A 373 GLU A 378 -1 O ALA A 375 N TYR A 331 SHEET 6 AE 7 ARG A 381 VAL A 391 -1 O ARG A 381 N GLU A 378 SHEET 7 AE 7 LYS A 299 ILE A 310 -1 O GLU A 305 N ALA A 389 SHEET 1 AF 2 PHE A 322 PHE A 323 0 SHEET 2 AF 2 MET A 349 VAL A 350 -1 O VAL A 350 N PHE A 322 SHEET 1 BA 6 HIS B 66 ASP B 70 0 SHEET 2 BA 6 HIS B 75 ASP B 80 -1 O TYR B 76 N TYR B 69 SHEET 3 BA 6 HIS B 11 ILE B 17 1 O VAL B 12 N ALA B 77 SHEET 4 BA 6 ALA B 101 ALA B 106 1 O ILE B 102 N ILE B 17 SHEET 5 BA 6 ILE B 130 ASN B 135 1 O ILE B 131 N LEU B 103 SHEET 6 BA 6 ILE B 169 ARG B 171 1 O VAL B 170 N LEU B 134 SHEET 1 BB10 LEU B 211 PRO B 213 0 SHEET 2 BB10 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 BB10 GLU B 241 VAL B 245 -1 O GLU B 243 N ALA B 293 SHEET 4 BB10 GLN B 251 MET B 260 -1 O GLN B 251 N ILE B 244 SHEET 5 BB10 VAL B 217 ILE B 220 0 SHEET 6 BB10 GLY B 224 ARG B 230 -1 O GLY B 224 N ILE B 220 SHEET 7 BB10 ASN B 273 ARG B 279 -1 O VAL B 274 N GLY B 229 SHEET 8 BB10 GLN B 251 MET B 260 -1 O THR B 254 N ARG B 279 SHEET 9 BB10 LYS B 263 LEU B 265 -1 O LYS B 263 N MET B 260 SHEET 10 BB10 GLN B 251 MET B 260 -1 O VAL B 258 N LEU B 265 SHEET 1 BC 2 ILE B 235 LYS B 237 0 SHEET 2 BC 2 GLU B 267 ARG B 269 -1 O GLY B 268 N ILE B 236 SHEET 1 BD 7 LYS B 299 ILE B 310 0 SHEET 2 BD 7 ASN B 355 MET B 368 -1 O ILE B 356 N VAL B 308 SHEET 3 BD 7 THR B 335 GLU B 342 -1 O THR B 338 N ILE B 363 SHEET 4 BD 7 GLN B 329 PHE B 332 -1 O PHE B 330 N VAL B 337 SHEET 5 BD 7 ARG B 373 GLU B 378 -1 O ALA B 375 N TYR B 331 SHEET 6 BD 7 ARG B 381 VAL B 391 -1 O ARG B 381 N GLU B 378 SHEET 7 BD 7 LYS B 299 ILE B 310 -1 O GLU B 305 N ALA B 389 SHEET 1 BE 2 PHE B 322 PHE B 323 0 SHEET 2 BE 2 MET B 349 VAL B 350 -1 O VAL B 350 N PHE B 322 LINK OG1 THR A 25 MG MG A1395 1555 1555 2.18 LINK O1G GNP A1394 MG MG A1395 1555 1555 1.94 LINK O2B GNP A1394 MG MG A1395 1555 1555 2.00 LINK MG MG A1395 O HOH A2003 1555 1555 2.11 LINK MG MG A1395 O HOH A2004 1555 1555 2.05 LINK OG1 THR B 25 MG MG B1395 1555 1555 2.05 LINK O2B GNP B1394 MG MG B1395 1555 1555 2.04 LINK O1G GNP B1394 MG MG B1395 1555 1555 2.10 LINK MG MG B1395 O HOH B2005 1555 1555 1.96 LINK MG MG B1395 O HOH B2006 1555 1555 2.22 LINK MG MG B1395 O HOH B2007 1555 1555 2.11 SITE 1 AC1 4 THR A 25 GNP A1394 HOH A2003 HOH A2004 SITE 1 AC2 5 THR B 25 GNP B1394 HOH B2005 HOH B2006 SITE 2 AC2 5 HOH B2007 SITE 1 AC3 20 VAL A 20 ASP A 21 HIS A 22 GLY A 23 SITE 2 AC3 20 LYS A 24 THR A 25 THR A 26 PRO A 82 SITE 3 AC3 20 GLY A 83 ASN A 135 LYS A 136 ASP A 138 SITE 4 AC3 20 MET A 139 SER A 173 ALA A 174 LEU A 175 SITE 5 AC3 20 MG A1395 HOH A2003 HOH A2004 HOH A2082 SITE 1 AC4 18 ALA A 96 LEU A 120 ARG A 123 GLN A 124 SITE 2 AC4 18 VAL A 125 GLN A 159 TYR A 160 LEU A 311 SITE 3 AC4 18 LYS A 313 ASP A 314 GLU A 315 TYR A 331 SITE 4 AC4 18 ARG A 333 ARG A 373 PHE A 374 ALA A 375 SITE 5 AC4 18 HOH A2081 HOH A2083 SITE 1 AC5 20 VAL B 20 ASP B 21 HIS B 22 GLY B 23 SITE 2 AC5 20 LYS B 24 THR B 25 THR B 26 PRO B 82 SITE 3 AC5 20 GLY B 83 ASN B 135 LYS B 136 ASP B 138 SITE 4 AC5 20 MET B 139 SER B 173 ALA B 174 LEU B 175 SITE 5 AC5 20 MG B1395 HOH B2005 HOH B2007 HOH B2095 SITE 1 AC6 16 ALA B 96 LEU B 120 ARG B 123 GLN B 124 SITE 2 AC6 16 VAL B 125 GLN B 159 TYR B 160 LEU B 311 SITE 3 AC6 16 LYS B 313 ASP B 314 GLU B 315 ARG B 333 SITE 4 AC6 16 ARG B 373 PHE B 374 ALA B 375 HOH B2097 CRYST1 72.070 72.070 335.730 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002979 0.00000 MTRIX1 1 -0.500380 -0.865800 0.002900 -0.22612 1 MTRIX2 1 0.865800 -0.500380 0.000420 -0.61432 1 MTRIX3 1 0.001090 0.002720 1.000000 -0.07002 1