HEADER TRANSFERASE 29-JUL-05 2BYD TITLE STRUCTURE OF AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE- TITLE 2 PHOSPHOPANTETHEINYL TRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HSPC223; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE-PHOSPHOPANTETHEINYL COMPND 5 TRANSFERASE, ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE- COMPND 6 PHOSPHOPANTETHEINYL TRANSFERASE; COMPND 7 EC: 1.2.1.31; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOEX-1 KEYWDS TRANSFERASE, FATTY ACID BIOSYNTHESIS, PHOSPHOPANTETHEINE TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BUNKOCZI,X.WU,E.DUBININA,C.JOHANSSON,C.SMEE,A.TURNBULL,U.OPPERMANN, AUTHOR 2 F.VON DELFT,C.ARROWSMITH,A.EDWARDS,M.SUNDSTROM,J.WEIGELT REVDAT 6 08-MAY-24 2BYD 1 REMARK REVDAT 5 28-FEB-18 2BYD 1 SOURCE JRNL REVDAT 4 24-JAN-18 2BYD 1 AUTHOR REVDAT 3 13-JUL-11 2BYD 1 VERSN REVDAT 2 24-FEB-09 2BYD 1 VERSN REVDAT 1 05-AUG-05 2BYD 0 JRNL AUTH G.BUNKOCZI,S.PASTA,A.JOSHI,X.WU,K.L.KAVANAGH,S.SMITH, JRNL AUTH 2 U.OPPERMANN JRNL TITL MECHANISM AND SUBSTRATE RECOGNITION OF HUMAN HOLO ACP JRNL TITL 2 SYNTHASE. JRNL REF CHEM. BIOL. V. 14 1243 2007 JRNL REFN ISSN 1074-5521 JRNL PMID 18022563 JRNL DOI 10.1016/J.CHEMBIOL.2007.10.013 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 20262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : -1.44000 REMARK 3 B33 (A**2) : 2.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2385 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2144 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3233 ; 1.282 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4969 ; 0.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;35.399 ;23.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;14.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2661 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 472 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2166 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1137 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1357 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1526 ; 3.794 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2297 ; 4.891 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1074 ; 7.692 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 931 ; 9.302 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 133 REMARK 3 RESIDUE RANGE : A 276 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2013 14.1232 17.8799 REMARK 3 T TENSOR REMARK 3 T11: -0.0627 T22: -0.0536 REMARK 3 T33: -0.0024 T12: -0.0072 REMARK 3 T13: 0.0010 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5020 L22: 1.6558 REMARK 3 L33: 1.1765 L12: 0.4488 REMARK 3 L13: 0.1721 L23: 0.5683 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0068 S13: -0.0390 REMARK 3 S21: -0.0525 S22: 0.1262 S23: -0.2315 REMARK 3 S31: -0.0001 S32: 0.0514 S33: -0.1079 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0387 29.2554 -2.1317 REMARK 3 T TENSOR REMARK 3 T11: -0.0381 T22: 0.0033 REMARK 3 T33: -0.1248 T12: -0.0139 REMARK 3 T13: -0.0061 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.6799 L22: 2.2312 REMARK 3 L33: 1.6939 L12: -0.1151 REMARK 3 L13: -1.1845 L23: 0.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.1590 S13: -0.0164 REMARK 3 S21: -0.1229 S22: -0.0130 S23: 0.0073 REMARK 3 S31: -0.0294 S32: -0.1602 S33: 0.0275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1290025119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9198 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M H3CIT/NA3CIT PH=5.7 14% REMARK 280 PEG3350, PH 5.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.61950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.97400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.61950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.97400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 PRO A 258 REMARK 465 ASP A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 ARG A 262 REMARK 465 HIS A 263 REMARK 465 GLN A 264 REMARK 465 ASP A 265 REMARK 465 VAL A 266 REMARK 465 PRO A 267 REMARK 465 SER A 268 REMARK 465 GLN A 269 REMARK 465 ASP A 270 REMARK 465 ASP A 271 REMARK 465 SER A 272 REMARK 465 LYS A 273 REMARK 465 PRO A 274 REMARK 465 THR A 275 REMARK 465 SER A 319 REMARK 465 LEU A 320 REMARK 465 GLU A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 106 CD CE NZ REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 SER A 109 OG REMARK 470 ASN A 114 CG OD1 ND2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 LYS A 165 NZ REMARK 470 LYS A 236 NZ REMARK 470 GLU A 237 CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LYS A 257 NZ REMARK 470 GLN A 276 CD OE1 NE2 REMARK 470 ASN A 315 CG OD1 ND2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 86 O HOH A 2058 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 107 101.29 -53.45 REMARK 500 SER A 108 -83.65 -78.47 REMARK 500 GLN A 122 149.46 -173.06 REMARK 500 GLU A 133 -36.84 -131.70 REMARK 500 LYS A 224 41.47 -140.29 REMARK 500 ASN A 315 -37.81 34.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 107 SER A 108 -141.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2034 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A2083 DISTANCE = 6.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1327 DBREF 2BYD A 1 23 PDB 2BYD 2BYD 1 23 DBREF 2BYD A 24 319 UNP Q9P0Q3 Q9P0Q3_HUMAN 14 309 DBREF 2BYD A 320 323 PDB 2BYD 2BYD 320 323 SEQRES 1 A 323 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 323 GLY ARG GLU ASN LEU TYR PHE GLN GLY HIS MET GLU GLY SEQRES 3 A 323 VAL ARG TRP ALA PHE SER CYS GLY THR TRP LEU PRO SER SEQRES 4 A 323 ARG ALA GLU TRP LEU LEU ALA VAL ARG SER ILE GLN PRO SEQRES 5 A 323 GLU GLU LYS GLU ARG ILE GLY GLN PHE VAL PHE ALA ARG SEQRES 6 A 323 ASP ALA LYS ALA ALA MET ALA GLY ARG LEU MET ILE ARG SEQRES 7 A 323 LYS LEU VAL ALA GLU LYS LEU ASN ILE PRO TRP ASN HIS SEQRES 8 A 323 ILE ARG LEU GLN ARG THR ALA LYS GLY LYS PRO VAL LEU SEQRES 9 A 323 ALA LYS ASP SER SER ASN PRO TYR PRO ASN PHE ASN PHE SEQRES 10 A 323 ASN ILE SER HIS GLN GLY ASP TYR ALA VAL LEU ALA ALA SEQRES 11 A 323 GLU PRO GLU LEU GLN VAL GLY ILE ASP ILE MET LYS THR SEQRES 12 A 323 SER PHE PRO GLY ARG GLY SER ILE PRO GLU PHE PHE HIS SEQRES 13 A 323 ILE MET LYS ARG LYS PHE THR ASN LYS GLU TRP GLU THR SEQRES 14 A 323 ILE ARG SER PHE LYS ASP GLU TRP THR GLN LEU ASP MET SEQRES 15 A 323 PHE TYR ARG ASN TRP ALA LEU LYS GLU SER PHE ILE LYS SEQRES 16 A 323 ALA ILE GLY VAL GLY LEU GLY PHE GLU LEU GLN ARG LEU SEQRES 17 A 323 GLU PHE ASP LEU SER PRO LEU ASN LEU ASP ILE GLY GLN SEQRES 18 A 323 VAL TYR LYS GLU THR ARG LEU PHE LEU ASP GLY GLU GLU SEQRES 19 A 323 GLU LYS GLU TRP ALA PHE GLU GLU SER LYS ILE ASP GLU SEQRES 20 A 323 HIS HIS PHE VAL ALA VAL ALA LEU ARG LYS PRO ASP GLY SEQRES 21 A 323 SER ARG HIS GLN ASP VAL PRO SER GLN ASP ASP SER LYS SEQRES 22 A 323 PRO THR GLN ARG GLN PHE THR ILE LEU ASN PHE ASN ASP SEQRES 23 A 323 LEU MET SER SER ALA VAL PRO MET THR PRO GLU ASP PRO SEQRES 24 A 323 SER PHE TRP ASP CYS PHE CYS PHE THR GLU GLU ILE PRO SEQRES 25 A 323 ILE ARG ASN GLY THR LYS SER LEU GLU SER GLY HET BR A1319 1 HET BR A1320 1 HET BR A1321 1 HET BR A1322 1 HET BR A1323 1 HET BR A1324 1 HET BR A1325 1 HET BR A1326 1 HET BR A1327 1 HETNAM BR BROMIDE ION FORMUL 2 BR 9(BR 1-) FORMUL 11 HOH *189(H2 O) HELIX 1 1 CYS A 33 TRP A 36 5 4 HELIX 2 2 SER A 39 SER A 49 1 11 HELIX 3 3 GLN A 51 PHE A 61 1 11 HELIX 4 4 PHE A 63 ASN A 86 1 24 HELIX 5 5 PRO A 88 ILE A 92 5 5 HELIX 6 6 SER A 150 MET A 158 1 9 HELIX 7 7 LYS A 159 PHE A 162 5 4 HELIX 8 8 THR A 163 SER A 172 1 10 HELIX 9 9 ASP A 175 GLY A 198 1 24 HELIX 10 10 VAL A 199 PHE A 203 5 5 HELIX 11 11 GLU A 204 GLN A 206 5 3 HELIX 12 12 ASN A 283 MET A 288 1 6 HELIX 13 13 ASP A 298 TRP A 302 5 5 HELIX 14 14 PHE A 307 ILE A 311 5 5 SHEET 1 AA 4 ASN A 116 GLN A 122 0 SHEET 2 AA 4 TYR A 125 GLU A 131 -1 O TYR A 125 N GLN A 122 SHEET 3 AA 4 VAL A 27 PHE A 31 -1 O VAL A 27 N ALA A 130 SHEET 4 AA 4 THR A 280 LEU A 282 1 O THR A 280 N ALA A 30 SHEET 1 AB 2 LEU A 94 ARG A 96 0 SHEET 2 AB 2 PRO A 102 LEU A 104 -1 O VAL A 103 N GLN A 95 SHEET 1 AC 4 GLN A 135 LYS A 142 0 SHEET 2 AC 4 HIS A 249 ARG A 256 -1 O PHE A 250 N MET A 141 SHEET 3 AC 4 TRP A 238 LYS A 244 -1 O ALA A 239 N LEU A 255 SHEET 4 AC 4 VAL A 222 TYR A 223 -1 O TYR A 223 N GLU A 242 SHEET 1 AD 3 LEU A 208 ASP A 211 0 SHEET 2 AD 3 ARG A 227 LEU A 230 -1 O ARG A 227 N ASP A 211 SHEET 3 AD 3 GLU A 233 GLU A 234 -1 O GLU A 233 N LEU A 230 CISPEP 1 SER A 213 PRO A 214 0 -3.99 SITE 1 AC1 3 GLN A 51 ARG A 74 ARG A 78 SITE 1 AC2 2 ARG A 65 THR A 308 SITE 1 AC3 3 TRP A 29 LYS A 84 PRO A 312 SITE 1 AC4 2 GLN A 276 GLN A 278 SITE 1 AC5 3 ARG A 48 THR A 295 PRO A 296 SITE 1 AC6 2 SER A 120 HIS A 121 SITE 1 AC7 2 ASN A 118 LYS A 195 SITE 1 AC8 2 ASN A 283 PHE A 284 SITE 1 AC9 3 PRO A 102 ASN A 118 ILE A 119 CRYST1 63.780 69.948 71.239 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014037 0.00000