HEADER TRANSCRIPTION REGULATION 10-AUG-05 2BZ2 TITLE SOLUTION STRUCTURE OF NELF E RRM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEGATIVE ELONGATION FACTOR E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF, RESIDUES 244-343; COMPND 5 SYNONYM: NELF E RRM, NELF-E, RD PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET 15B KEYWDS NELF E, RNA RECOGNITION MOTIF, ALTERNATIVE SPLICING, NUCLEAR PROTEIN, KEYWDS 2 PHOSPHORYLATION, REPRESSOR, RNA-BINDING, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SCHWEIMER,J.N.RAO,L.NEUMANN,P.ROSCH,B.M.WOHRL REVDAT 5 15-MAY-24 2BZ2 1 REMARK REVDAT 4 28-FEB-18 2BZ2 1 SOURCE JRNL REVDAT 3 24-FEB-09 2BZ2 1 VERSN REVDAT 2 20-DEC-06 2BZ2 1 JRNL REVDAT 1 16-AUG-06 2BZ2 0 JRNL AUTH J.N.RAO,L.NEUMANN,S.WENZEL,K.SCHWEIMER,P.ROSCH,B.M.WOHRL JRNL TITL STRUCTURAL STUDIES ON THE RNA-RECOGNITION MOTIF OF NELF E, A JRNL TITL 2 CELLULAR NEGATIVE TRANSCRIPTION ELONGATION FACTOR INVOLVED JRNL TITL 3 IN THE REGULATION OF HIV TRANSCRIPTION. JRNL REF BIOCHEM. J. V. 400 449 2006 JRNL REFN ESSN 1470-8728 JRNL PMID 16898873 JRNL DOI 10.1042/BJ20060421 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BZ2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1290025236. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C-EDITED NOESY; 15N- EDITED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : XPLOR SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING MULTIDIMENSIONAL REMARK 210 HETERONUCLEAR NMR ON 13C,15N LABELED NELF E RRM REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 GLY A 22 REMARK 465 PRO A 23 REMARK 465 PHE A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 SER A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 PHE A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 465 ARG A 34 REMARK 465 LEU A 114 REMARK 465 ASP A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 THR A 118 REMARK 465 GLY A 119 REMARK 465 LYS A 120 REMARK 465 SER A 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 40 92.13 -165.89 REMARK 500 1 VAL A 98 -161.96 -102.86 REMARK 500 1 SER A 100 35.79 179.69 REMARK 500 2 ASN A 40 90.83 -161.32 REMARK 500 2 VAL A 98 -161.59 -116.59 REMARK 500 2 SER A 100 33.94 -171.40 REMARK 500 3 ASN A 40 97.53 -179.95 REMARK 500 3 VAL A 98 -164.35 -118.79 REMARK 500 3 SER A 100 35.45 179.33 REMARK 500 4 ASN A 40 91.15 -162.08 REMARK 500 4 VAL A 98 -163.20 -114.99 REMARK 500 4 SER A 100 36.36 178.82 REMARK 500 5 ASN A 40 91.82 -160.74 REMARK 500 5 VAL A 98 -165.41 -118.07 REMARK 500 5 SER A 100 34.22 -179.10 REMARK 500 6 ASN A 40 86.81 -150.09 REMARK 500 6 VAL A 98 -161.34 -122.83 REMARK 500 6 SER A 100 35.25 177.36 REMARK 500 7 ASN A 40 97.91 -173.14 REMARK 500 7 VAL A 98 -164.72 -124.47 REMARK 500 7 SER A 100 34.82 178.63 REMARK 500 8 ASN A 40 84.18 -157.77 REMARK 500 8 VAL A 98 -166.31 -123.48 REMARK 500 8 SER A 100 35.42 179.67 REMARK 500 9 ASN A 40 91.84 -160.46 REMARK 500 9 VAL A 98 -159.60 -100.50 REMARK 500 9 SER A 100 36.53 179.47 REMARK 500 10 ASN A 40 100.55 179.04 REMARK 500 10 SER A 100 36.77 -179.85 REMARK 500 11 ASN A 40 95.59 -168.20 REMARK 500 11 GLU A 92 -55.81 -120.02 REMARK 500 11 VAL A 98 -164.00 -128.06 REMARK 500 11 SER A 100 36.94 178.20 REMARK 500 12 VAL A 98 -164.63 -117.15 REMARK 500 12 SER A 100 36.50 179.67 REMARK 500 12 GLN A 111 -64.67 172.03 REMARK 500 13 ASN A 40 92.66 -161.80 REMARK 500 13 VAL A 98 -161.29 -127.03 REMARK 500 13 SER A 100 34.40 176.48 REMARK 500 14 VAL A 98 -161.91 -127.63 REMARK 500 14 SER A 100 37.77 176.45 REMARK 500 15 ARG A 37 -151.76 44.51 REMARK 500 15 ASN A 40 91.88 -162.90 REMARK 500 15 VAL A 98 -165.77 -105.45 REMARK 500 15 SER A 100 36.55 -179.25 REMARK 500 16 ASN A 40 88.11 -155.00 REMARK 500 16 VAL A 98 -165.88 -122.64 REMARK 500 16 SER A 100 33.29 179.90 REMARK 500 17 VAL A 98 -160.30 -103.81 REMARK 500 17 SER A 100 36.62 178.62 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.09 SIDE CHAIN REMARK 500 1 ARG A 55 0.14 SIDE CHAIN REMARK 500 1 ARG A 73 0.29 SIDE CHAIN REMARK 500 1 ARG A 109 0.21 SIDE CHAIN REMARK 500 2 ARG A 37 0.15 SIDE CHAIN REMARK 500 2 ARG A 73 0.32 SIDE CHAIN REMARK 500 2 ARG A 109 0.27 SIDE CHAIN REMARK 500 3 ARG A 37 0.29 SIDE CHAIN REMARK 500 3 ARG A 55 0.26 SIDE CHAIN REMARK 500 3 ARG A 73 0.30 SIDE CHAIN REMARK 500 3 ARG A 109 0.27 SIDE CHAIN REMARK 500 4 ARG A 37 0.30 SIDE CHAIN REMARK 500 4 ARG A 55 0.12 SIDE CHAIN REMARK 500 4 ARG A 73 0.31 SIDE CHAIN REMARK 500 4 ARG A 109 0.17 SIDE CHAIN REMARK 500 5 ARG A 37 0.32 SIDE CHAIN REMARK 500 5 ARG A 55 0.21 SIDE CHAIN REMARK 500 5 ARG A 73 0.29 SIDE CHAIN REMARK 500 5 ARG A 109 0.13 SIDE CHAIN REMARK 500 6 ARG A 37 0.22 SIDE CHAIN REMARK 500 6 ARG A 55 0.32 SIDE CHAIN REMARK 500 6 ARG A 73 0.30 SIDE CHAIN REMARK 500 6 ARG A 109 0.31 SIDE CHAIN REMARK 500 7 ARG A 37 0.08 SIDE CHAIN REMARK 500 7 ARG A 55 0.21 SIDE CHAIN REMARK 500 7 ARG A 73 0.32 SIDE CHAIN REMARK 500 7 ARG A 109 0.16 SIDE CHAIN REMARK 500 8 ARG A 37 0.22 SIDE CHAIN REMARK 500 8 ARG A 55 0.25 SIDE CHAIN REMARK 500 8 ARG A 73 0.18 SIDE CHAIN REMARK 500 8 ARG A 109 0.21 SIDE CHAIN REMARK 500 9 ARG A 37 0.26 SIDE CHAIN REMARK 500 9 ARG A 55 0.28 SIDE CHAIN REMARK 500 9 ARG A 73 0.20 SIDE CHAIN REMARK 500 9 ARG A 109 0.31 SIDE CHAIN REMARK 500 10 ARG A 37 0.27 SIDE CHAIN REMARK 500 10 ARG A 55 0.30 SIDE CHAIN REMARK 500 10 ARG A 73 0.31 SIDE CHAIN REMARK 500 10 ARG A 109 0.12 SIDE CHAIN REMARK 500 11 ARG A 37 0.24 SIDE CHAIN REMARK 500 11 ARG A 55 0.25 SIDE CHAIN REMARK 500 11 ARG A 73 0.28 SIDE CHAIN REMARK 500 11 ARG A 109 0.25 SIDE CHAIN REMARK 500 12 ARG A 37 0.28 SIDE CHAIN REMARK 500 12 ARG A 55 0.19 SIDE CHAIN REMARK 500 12 ARG A 73 0.30 SIDE CHAIN REMARK 500 12 ARG A 109 0.09 SIDE CHAIN REMARK 500 13 ARG A 37 0.17 SIDE CHAIN REMARK 500 13 ARG A 55 0.21 SIDE CHAIN REMARK 500 13 ARG A 73 0.20 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 79 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2BZ2 A 1 21 PDB 2BZ2 2BZ2 1 21 DBREF 2BZ2 A 22 121 UNP P18615 NELFE_HUMAN 244 343 SEQRES 1 A 121 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 121 LEU VAL PRO ARG GLY SER HIS MET GLY PRO PHE ARG ARG SEQRES 3 A 121 SER ASP SER PHE PRO GLU ARG ARG ALA PRO ARG LYS GLY SEQRES 4 A 121 ASN THR LEU TYR VAL TYR GLY GLU ASP MET THR PRO THR SEQRES 5 A 121 LEU LEU ARG GLY ALA PHE SER PRO PHE GLY ASN ILE ILE SEQRES 6 A 121 ASP LEU SER MET ASP PRO PRO ARG ASN CYS ALA PHE VAL SEQRES 7 A 121 THR TYR GLU LYS MET GLU SER ALA ASP GLN ALA VAL ALA SEQRES 8 A 121 GLU LEU ASN GLY THR GLN VAL GLU SER VAL GLN LEU LYS SEQRES 9 A 121 VAL ASN ILE ALA ARG LYS GLN PRO MET LEU ASP ALA ALA SEQRES 10 A 121 THR GLY LYS SER HELIX 1 1 THR A 50 SER A 59 1 10 HELIX 2 2 LYS A 82 ASN A 94 1 13 SHEET 1 AA 4 LEU A 67 ASP A 70 0 SHEET 2 AA 4 CYS A 75 THR A 79 -1 O CYS A 75 N ASP A 70 SHEET 3 AA 4 THR A 41 TYR A 45 -1 O LEU A 42 N VAL A 78 SHEET 4 AA 4 LYS A 104 ILE A 107 -1 O LYS A 104 N TYR A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1