HEADER HYDROLASE 14-SEP-05 2C1F TITLE THE STRUCTURE OF THE FAMILY 11 XYLANASE FROM NEOCALLIMASTIX TITLE 2 PATRICIARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL ENDO-1,4-BETA-XYLANASE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 2, RESIDUES 275-499; COMPND 5 SYNONYM: ENDO-1,4-BETA-XYLANASE A, XYLA; COMPND 6 EC: 3.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOCALLIMASTIX PATRICIARUM; SOURCE 3 ORGANISM_TAXID: 4758; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MURRAY,R.J.LEWIS,H.J.GILBERT REVDAT 4 13-DEC-23 2C1F 1 LINK REVDAT 3 13-JUL-11 2C1F 1 VERSN REVDAT 2 24-FEB-09 2C1F 1 VERSN REVDAT 1 13-FEB-07 2C1F 0 JRNL AUTH M.VARDAKOU,C.DUMON,J.W.MURRAY,P.CHRISTAKOPOULOS,D.P.WEINER, JRNL AUTH 2 N.JUGE,R.J.LEWIS,H.J.GILBERT,J.E.FLINT JRNL TITL UNDERSTANDING THE STRUCTURAL BASIS FOR SUBSTRATE AND JRNL TITL 2 INHIBITOR RECOGNITION IN EUKARYOTIC GH11 XYLANASES. JRNL REF J.MOL.BIOL. V. 375 1293 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18078955 JRNL DOI 10.1016/J.JMB.2007.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 15357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 9.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 83.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1762 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2388 ; 1.218 ; 1.902 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 7.212 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;39.953 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;14.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;26.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2030 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 285 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 814 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 0.789 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1698 ; 0.863 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 869 ; 1.454 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 690 ; 2.101 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 220 REMARK 3 RESIDUE RANGE : A 1220 A 1221 REMARK 3 RESIDUE RANGE : A 2001 A 2173 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4620 22.2710 43.1780 REMARK 3 T TENSOR REMARK 3 T11: -0.0544 T22: -0.0912 REMARK 3 T33: -0.0527 T12: 0.0303 REMARK 3 T13: 0.0039 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.1426 L22: 1.3602 REMARK 3 L33: 1.4684 L12: 0.4282 REMARK 3 L13: 0.2065 L23: -0.0984 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.0629 S13: -0.0273 REMARK 3 S21: -0.1349 S22: -0.0028 S23: -0.1490 REMARK 3 S31: 0.1833 S32: 0.0760 S33: 0.0246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1290025647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 37.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 7.490 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.87 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1F5J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CDCL2, 0.1M SODIUM ACETATE AND REMARK 280 30% V/V PEG400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.66800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 58.66800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.66800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 58.66800 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 58.66800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 58.66800 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 58.66800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 58.66800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 58.66800 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 58.66800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 58.66800 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 58.66800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 58.66800 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 58.66800 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 58.66800 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 58.66800 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 58.66800 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 58.66800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 58.66800 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 58.66800 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 58.66800 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 58.66800 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 58.66800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 58.66800 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 58.66800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 58.66800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 220 REMARK 465 LYS A 221 REMARK 465 GLY A 222 REMARK 465 SER A 223 REMARK 465 SER A 224 REMARK 465 PRO A 225 REMARK 465 ALA A 226 REMARK 465 LEU A 227 REMARK 465 GLU A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 1 O HOH A 2001 1.79 REMARK 500 OE2 GLU A 201 O HOH A 2158 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 -42.47 77.89 REMARK 500 SER A 155 107.31 -15.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1220 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD1 REMARK 620 2 ASP A 17 OD2 54.0 REMARK 620 3 ASP A 122 OD1 88.7 91.4 REMARK 620 4 ASP A 122 OD2 119.8 144.9 53.7 REMARK 620 5 HOH A2075 O 83.8 118.8 134.3 92.1 REMARK 620 6 HOH A2091 O 149.8 97.3 102.6 88.8 106.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1221 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASP A 71 OD1 123.6 REMARK 620 3 ASP A 71 OD2 49.6 81.8 REMARK 620 4 ASP A 71 OD2 96.7 52.1 91.4 REMARK 620 5 HOH A2057 O 99.8 134.2 143.5 114.3 REMARK 620 6 HOH A2057 O 113.0 81.5 82.8 133.5 95.6 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A1221 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT CORRESPONDS TO RESIDUES 275-495 IN THE REMARK 999 NATIVE FULL-LENGTH PROTEIN DBREF 2C1F A 2 226 UNP P29127 XYNA_NEOPA 275 499 SEQADV 2C1F MET A 1 UNP P29127 EXPRESSION TAG SEQADV 2C1F LEU A 227 UNP P29127 EXPRESSION TAG SEQADV 2C1F GLU A 228 UNP P29127 EXPRESSION TAG SEQADV 2C1F HIS A 229 UNP P29127 EXPRESSION TAG SEQADV 2C1F HIS A 230 UNP P29127 EXPRESSION TAG SEQADV 2C1F HIS A 231 UNP P29127 EXPRESSION TAG SEQADV 2C1F HIS A 232 UNP P29127 EXPRESSION TAG SEQADV 2C1F HIS A 233 UNP P29127 EXPRESSION TAG SEQADV 2C1F HIS A 234 UNP P29127 EXPRESSION TAG SEQRES 1 A 234 MET LYS PHE THR VAL GLY ASN GLY GLN ASN GLN HIS LYS SEQRES 2 A 234 GLY VAL ASN ASP GLY PHE SER TYR GLU ILE TRP LEU ASP SEQRES 3 A 234 ASN THR GLY GLY ASN GLY SER MET THR LEU GLY SER GLY SEQRES 4 A 234 ALA THR PHE LYS ALA GLU TRP ASN ALA ALA VAL ASN ARG SEQRES 5 A 234 GLY ASN PHE LEU ALA ARG ARG GLY LEU ASP PHE GLY SER SEQRES 6 A 234 GLN LYS LYS ALA THR ASP TYR ASP TYR ILE GLY LEU ASP SEQRES 7 A 234 TYR ALA ALA THR TYR LYS GLN THR ALA SER ALA SER GLY SEQRES 8 A 234 ASN SER ARG LEU CYS VAL TYR GLY TRP PHE GLN ASN ARG SEQRES 9 A 234 GLY LEU ASN GLY VAL PRO LEU VAL GLU TYR TYR ILE ILE SEQRES 10 A 234 GLU ASP TRP VAL ASP TRP VAL PRO ASP ALA GLN GLY LYS SEQRES 11 A 234 MET VAL THR ILE ASP GLY ALA GLN TYR LYS ILE PHE GLN SEQRES 12 A 234 MET ASP HIS THR GLY PRO THR ILE ASN GLY GLY SER GLU SEQRES 13 A 234 THR PHE LYS GLN TYR PHE SER VAL ARG GLN GLN LYS ARG SEQRES 14 A 234 THR SER GLY HIS ILE THR VAL SER ASP HIS PHE LYS GLU SEQRES 15 A 234 TRP ALA LYS GLN GLY TRP GLY ILE GLY ASN LEU TYR GLU SEQRES 16 A 234 VAL ALA LEU ASN ALA GLU GLY TRP GLN SER SER GLY VAL SEQRES 17 A 234 ALA ASP VAL THR LEU LEU ASP VAL TYR THR THR PRO LYS SEQRES 18 A 234 GLY SER SER PRO ALA LEU GLU HIS HIS HIS HIS HIS HIS HET CD A1220 1 HET CD A1221 1 HETNAM CD CADMIUM ION FORMUL 2 CD 2(CD 2+) FORMUL 4 HOH *173(H2 O) HELIX 1 1 ALA A 69 TYR A 72 5 4 HELIX 2 2 VAL A 176 GLN A 186 1 11 SHEET 1 AA 7 LYS A 2 VAL A 5 0 SHEET 2 AA 7 ASN A 31 LEU A 36 -1 O GLY A 32 N VAL A 5 SHEET 3 AA 7 PHE A 42 ASN A 47 -1 O LYS A 43 N THR A 35 SHEET 4 AA 7 GLU A 195 THR A 219 -1 O GLY A 207 N TRP A 46 SHEET 5 AA 7 ASN A 54 ASP A 62 -1 O PHE A 55 N GLY A 202 SHEET 6 AA 7 PHE A 19 LEU A 25 -1 O SER A 20 N GLY A 60 SHEET 7 AA 7 GLN A 11 ASN A 16 -1 O HIS A 12 N ILE A 23 SHEET 1 AB 5 LYS A 2 VAL A 5 0 SHEET 2 AB 5 ASN A 31 LEU A 36 -1 O GLY A 32 N VAL A 5 SHEET 3 AB 5 PHE A 42 ASN A 47 -1 O LYS A 43 N THR A 35 SHEET 4 AB 5 GLU A 195 THR A 219 -1 O GLY A 207 N TRP A 46 SHEET 5 AB 5 TYR A 74 GLN A 102 -1 O TYR A 74 N THR A 219 LINK OD1 ASP A 17 CD CD A1220 1555 1555 2.57 LINK OD2 ASP A 17 CD CD A1220 1555 1555 2.14 LINK OD1 ASP A 71 CD CD A1221 1555 1555 2.55 LINK OD1 ASP A 71 CD CD A1221 2555 1555 2.71 LINK OD2 ASP A 71 CD CD A1221 1555 1555 2.67 LINK OD2 ASP A 71 CD CD A1221 2555 1555 2.14 LINK OD1 ASP A 122 CD CD A1220 24555 1555 2.40 LINK OD2 ASP A 122 CD CD A1220 24555 1555 2.49 LINK CD CD A1220 O HOH A2075 1555 24555 2.39 LINK CD CD A1220 O HOH A2091 1555 24555 2.57 LINK CD CD A1221 O HOH A2057 1555 1555 2.36 LINK CD CD A1221 O HOH A2057 1555 2555 3.04 SITE 1 AC1 4 ASP A 17 ASP A 122 HOH A2075 HOH A2091 SITE 1 AC2 2 ASP A 71 HOH A2057 CRYST1 117.336 117.336 117.336 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008523 0.00000