HEADER DNA-BINDING PROTEIN 28-SEP-05 2C2F TITLE DPS FROM DEINOCOCCUS RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING STRESS RESPONSE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DPS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS DPS, IRON, DEINOCOCCUS RADIODURANS, DNA-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.V.ROMAO,E.MITCHELL,S.MCSWEENEY REVDAT 3 24-FEB-09 2C2F 1 VERSN REVDAT 2 20-DEC-06 2C2F 1 JRNL REVDAT 1 26-JUL-06 2C2F 0 JRNL AUTH C.V.ROMAO,E.MITCHELL,S.MCSWEENEY JRNL TITL THE CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS JRNL TITL 2 DPS PROTEIN (DR2263) REVEALS THE PRESENCE OF A JRNL TITL 3 NOVEL METAL CENTRE IN THE N TERMINUS. JRNL REF J.BIOL.INORG.CHEM. V. 11 891 2006 JRNL REFN ISSN 0949-8257 JRNL PMID 16855817 JRNL DOI 10.1007/S00775-006-0142-5 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1638 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2252 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1560 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.1890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1463 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1516 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2056 ; 1.637 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 179 ; 4.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;40.593 ;23.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;13.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;10.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1169 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 696 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1051 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 920 ; 1.088 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1453 ; 1.618 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 662 ; 2.548 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 603 ; 4.049 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. THE OCCUPANIES OF ATOMS HAVING OCCUPANCIES REMARK 3 LOWER THAN 1 WERE ESTIMATED FROM THEIR ATOMIC B-FACTORS. THE REMARK 3 FIRST 29 AMINO ACID RESIDUES WERE NOT MODELLED BECAUSE IT WAS REMARK 3 NOT POSSIBLE TO ALLOCATE THE ELECTRON DENSITY. REMARK 4 REMARK 4 2C2F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-05. REMARK 100 THE PDBE ID CODE IS EBI-25800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MULTI-LAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 31.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 84.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 84.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED REMOTE TO THE ANOMALOUS ABSORPTION REMARK 200 EDGES OF ZN AND FE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM LITHIUM SULFATE, 100MM REMARK 280 TRIS-HCL PH8.5, 15% PEG4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 90.61600 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 90.61600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 -1.000000 0.000000 0.000000 90.61600 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 90.61600 REMARK 350 BIOMT1 6 0.000000 -1.000000 0.000000 90.61600 REMARK 350 BIOMT2 6 0.000000 0.000000 -1.000000 90.61600 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 90.61600 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 90.61600 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 0.000000 -1.000000 90.61600 REMARK 350 BIOMT3 8 -1.000000 0.000000 0.000000 90.61600 REMARK 350 BIOMT1 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 -1.000000 0.000000 90.61600 REMARK 350 BIOMT3 9 0.000000 0.000000 -1.000000 90.61600 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 90.61600 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 90.61600 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 90.61600 REMARK 350 BIOMT2 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 -1.000000 0.000000 90.61600 REMARK 350 BIOMT1 12 -1.000000 0.000000 0.000000 90.61600 REMARK 350 BIOMT2 12 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 90.61600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 FE FE A1209 LIES ON A SPECIAL POSITION. REMARK 375 FE FE A1210 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A1212 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2076 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2123 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 LYS A 15 REMARK 465 LYS A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 THR A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 GLY A 26 REMARK 465 VAL A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 51 -126.29 55.51 REMARK 500 ASP A 203 116.71 -167.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1208 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 ASP A 110 OD1 98.4 REMARK 620 3 ASP A 110 OD2 153.9 57.1 REMARK 620 4 GOL A1213B O3 88.7 169.2 114.4 REMARK 620 5 HOH A2133 O 89.9 86.0 80.4 85.8 REMARK 620 6 GLU A 114 OE2 96.6 89.3 92.2 98.0 172.5 REMARK 620 7 GOL A1213A O2 91.6 168.8 113.7 13.7 99.2 84.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1209 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 93 OD1 51.9 REMARK 620 3 ASP A 93 OD1 149.4 102.7 REMARK 620 4 ASP A 93 OD2 118.8 70.5 52.0 REMARK 620 5 ASP A 93 OD2 120.3 150.0 71.5 119.9 REMARK 620 6 ASP A 93 OD1 71.3 103.2 103.8 149.8 52.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1210 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD1 REMARK 620 2 ASP A 181 OD1 91.6 REMARK 620 3 HOH A2248 O 85.8 95.2 REMARK 620 4 ASP A 181 OD1 91.6 91.6 172.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 55 OE2 REMARK 620 2 ASP A 36 OD2 93.3 REMARK 620 3 HIS A 39 NE2 115.4 102.4 REMARK 620 4 GLU A 55 OE1 53.3 145.4 87.1 REMARK 620 5 HIS A 50 NE2 110.1 112.5 119.6 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C2U RELATED DB: PDB REMARK 900 DPS FROM DEINOCOCCUS RADIODURANS DBREF 2C2F A 1 207 UNP Q9RS64 Q9RS64_DEIRA 1 207 SEQRES 1 A 207 MET THR LYS LYS SER THR LYS SER GLU ALA ALA SER LYS SEQRES 2 A 207 THR LYS LYS SER GLY VAL PRO GLU THR GLY ALA GLN GLY SEQRES 3 A 207 VAL ARG ALA GLY GLY ALA ASP HIS ALA ASP ALA ALA HIS SEQRES 4 A 207 LEU GLY THR VAL ASN ASN ALA LEU VAL ASN HIS HIS TYR SEQRES 5 A 207 LEU GLU GLU LYS GLU PHE GLN THR VAL ALA GLU THR LEU SEQRES 6 A 207 GLN ARG ASN LEU ALA THR THR ILE SER LEU TYR LEU LYS SEQRES 7 A 207 PHE LYS LYS TYR HIS TRP ASP ILE ARG GLY ARG PHE PHE SEQRES 8 A 207 ARG ASP LEU HIS LEU ALA TYR ASP GLU PHE ILE ALA GLU SEQRES 9 A 207 ILE PHE PRO SER ILE ASP GLU GLN ALA GLU ARG LEU VAL SEQRES 10 A 207 ALA LEU GLY GLY SER PRO LEU ALA ALA PRO ALA ASP LEU SEQRES 11 A 207 ALA ARG TYR SER THR VAL GLN VAL PRO GLN GLU THR VAL SEQRES 12 A 207 ARG ASP ALA ARG THR GLN VAL ALA ASP LEU VAL GLN ASP SEQRES 13 A 207 LEU SER ARG VAL GLY LYS GLY TYR ARG ASP ASP SER GLN SEQRES 14 A 207 ALA CYS ASP GLU ALA ASN ASP PRO VAL THR ALA ASP MET SEQRES 15 A 207 TYR ASN GLY TYR ALA ALA THR ILE ASP LYS ILE ARG TRP SEQRES 16 A 207 MET LEU GLN ALA ILE MET ASP ASP GLU ARG LEU ASP HET FE A1208 1 HET FE A1209 1 HET FE A1210 1 HET ZN A1211 1 HET SO4 A1212 5 HET GOL A1213 12 HET GOL A1214 6 HET GOL A1215 6 HETNAM FE FE (III) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL FORMUL 2 FE 3(FE 3+) FORMUL 5 ZN ZN 2+ FORMUL 6 SO4 O4 S 2- FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *278(H2 O1) HELIX 1 1 ALA A 32 ALA A 35 5 4 HELIX 2 2 GLU A 54 ILE A 86 1 33 HELIX 3 3 PHE A 90 PHE A 106 1 17 HELIX 4 4 PRO A 107 LEU A 119 1 13 HELIX 5 5 ALA A 126 SER A 134 1 9 HELIX 6 6 ASP A 145 ALA A 174 1 30 HELIX 7 7 ASP A 176 ASP A 202 1 27 LINK NE AARG A 92 O1 GOL A1214 1555 1555 1.65 LINK FE FE A1208 OD1 ASP A 110 1555 2665 2.38 LINK FE FE A1208 OD2 ASP A 110 1555 2665 2.30 LINK FE FE A1208 O3 BGOL A1213 1555 1555 2.22 LINK FE FE A1208 O HOH A2133 1555 1555 2.11 LINK FE FE A1208 OE2 GLU A 114 1555 2665 1.99 LINK FE FE A1208 O2 AGOL A1213 1555 1555 2.22 LINK FE FE A1208 NE2 HIS A 83 1555 1555 2.15 LINK FE FE A1209 OD1 ASP A 93 1555 1555 2.49 LINK FE FE A1209 OD1 ASP A 93 1555 6566 2.47 LINK FE FE A1209 OD2 ASP A 93 1555 6566 2.47 LINK FE FE A1209 OD2 ASP A 93 1555 12665 2.43 LINK FE FE A1209 OD1 ASP A 93 1555 12665 2.46 LINK FE FE A1209 OD2 ASP A 93 1555 1555 2.46 LINK FE FE A1210 O HOH A2248 1555 9555 2.39 LINK FE FE A1210 OD1 ASP A 181 1555 1555 2.08 LINK FE FE A1210 O HOH A2248 1555 1555 2.39 LINK FE FE A1210 O HOH A2248 1555 5555 2.39 LINK FE FE A1210 OD1 ASP A 181 1555 5555 2.08 LINK FE FE A1210 OD1 ASP A 181 1555 9555 2.08 LINK ZN ZN A1211 NE2 HIS A 39 1555 1555 2.06 LINK ZN ZN A1211 OE1 GLU A 55 1555 1555 2.70 LINK ZN ZN A1211 NE2 HIS A 50 1555 1555 2.05 LINK ZN ZN A1211 OD2 ASP A 36 1555 1555 2.02 LINK ZN ZN A1211 OE2 GLU A 55 1555 1555 2.06 SITE 1 AC1 5 HIS A 83 ASP A 110 GLU A 114 GOL A1213 SITE 2 AC1 5 HOH A2133 SITE 1 AC2 2 ASP A 93 HOH A2124 SITE 1 AC3 3 ASP A 181 HOH A2248 HOH A2249 SITE 1 AC4 4 ASP A 36 HIS A 39 HIS A 50 GLU A 55 SITE 1 AC5 2 ARG A 89 ARG A 205 SITE 1 AC6 14 HIS A 83 HIS A 95 LEU A 96 ASP A 99 SITE 2 AC6 14 ASP A 110 GLU A 114 LYS A 192 MET A 196 SITE 3 AC6 14 FE A1208 HOH A2133 HOH A2271 HOH A2272 SITE 4 AC6 14 HOH A2273 HOH A2274 SITE 1 AC7 5 ARG A 92 ASP A 93 LEU A 96 HOH A2128 SITE 2 AC7 5 HOH A2275 SITE 1 AC8 4 HIS A 51 LYS A 162 HOH A2276 HOH A2277 CRYST1 90.616 90.616 90.616 90.00 90.00 90.00 P 2 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011036 0.00000