HEADER HYDROLASE 06-NOV-05 2C61 TITLE CRYSTAL STRUCTURE OF THE NON-CATALYTIC B SUBUNIT OF A-TYPE ATPASE FROM TITLE 2 M. MAZEI GO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-TYPE ATP SYNTHASE NON-CATALYTIC SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: V-TYPE ATPASE SUBUNIT B; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI GO1; SOURCE 3 ORGANISM_TAXID: 192952; SOURCE 4 ATCC: BAA-159; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9D-HIS6 KEYWDS HYDROLASE, A-TYPE ATP SYNTHASE, H+ ATPASE, A1AO, NON-CATALYTIC, ATP KEYWDS 2 SYNTHESIS, HYDROGEN ION TRANSPORT, ION TRANSPORT, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR I.SCHAEFER,S.M.BAILER,M.DUESER,M.BOERSCH,R.A.BERNAL,G.GRUEBER,D.STOCK REVDAT 3 08-MAY-24 2C61 1 REMARK REVDAT 2 24-FEB-09 2C61 1 VERSN REVDAT 1 11-DEC-06 2C61 0 JRNL AUTH I.SCHAEFER,S.M.BAILER,M.DUESER,M.BOERSCH,R.A.BERNAL,D.STOCK, JRNL AUTH 2 G.GRUEBER JRNL TITL CRYSTAL STRUCTURE OF THE ARCHAEAL A1AO ATP SYNTHASE SUBUNIT JRNL TITL 2 B FROM METHANOSARCINA MAZEI GO1: IMPLICATIONS OF JRNL TITL 3 NUCLEOTIDE-BINDING DIFFERENCES IN THE MAJOR A1AO SUBUNITS A JRNL TITL 4 AND B. SUBUNITS A AND B JRNL REF J.MOL.BIOL. V. 358 725 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16563431 JRNL DOI 10.1016/J.JMB.2006.02.057 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 140361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 499 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 748 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.254 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6732 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9128 ; 1.296 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 851 ;10.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 302 ;33.320 ;23.907 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1136 ;11.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;13.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1030 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5128 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3089 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4612 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 596 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4380 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6845 ; 1.231 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2630 ; 2.041 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2283 ; 3.227 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1 TO 12, 57 TO 70 456 TO 460 ARE DISORDERED REMARK 3 IN CHAIN A, RESIDUES 1 TO 12, 57 TO 70 AND 259 TO 271 ARE REMARK 3 DISORDERED IN CHAIN B REMARK 4 REMARK 4 2C61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290026270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 400 0.1 M NACL 0.1 M CITRATE REMARK 280 PH 5.5, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.81150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.35750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.20900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.35750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.81150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.20900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CREATES ATP FROM ADP IN THE PRESENCE OF A PROTON REMARK 400 GRADIENT ACROSS THE MEMBRANE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 LYS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 TYR A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 GLN A 10 REMARK 465 ILE A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 58 REMARK 465 GLY A 59 REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 GLY A 62 REMARK 465 LEU A 63 REMARK 465 ASP A 64 REMARK 465 LYS A 65 REMARK 465 ASP A 66 REMARK 465 CYS A 67 REMARK 465 GLY A 68 REMARK 465 VAL A 69 REMARK 465 ILE A 70 REMARK 465 LYS A 458 REMARK 465 ALA A 459 REMARK 465 LYS A 460 REMARK 465 MET B -8 REMARK 465 LYS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 TYR B 5 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 ILE B 8 REMARK 465 THR B 9 REMARK 465 GLN B 10 REMARK 465 ILE B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 58 REMARK 465 GLY B 59 REMARK 465 THR B 60 REMARK 465 GLY B 61 REMARK 465 GLY B 62 REMARK 465 LEU B 63 REMARK 465 ASP B 64 REMARK 465 LYS B 65 REMARK 465 ASP B 66 REMARK 465 CYS B 67 REMARK 465 GLY B 68 REMARK 465 VAL B 69 REMARK 465 GLY B 260 REMARK 465 ALA B 261 REMARK 465 ALA B 262 REMARK 465 ARG B 263 REMARK 465 ASN B 264 REMARK 465 GLU B 265 REMARK 465 VAL B 266 REMARK 465 PRO B 267 REMARK 465 GLY B 268 REMARK 465 ARG B 269 REMARK 465 ARG B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 457 CA C O CB CG CD NE REMARK 470 ARG A 457 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 50 O HOH A 2049 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 48 -168.32 -109.87 REMARK 500 MET A 115 -32.67 69.42 REMARK 500 ASP A 125 158.63 75.42 REMARK 500 ILE A 134 -63.43 -97.82 REMARK 500 ASN A 138 59.33 -148.58 REMARK 500 PRO A 155 44.02 -85.48 REMARK 500 ASN A 264 19.70 58.66 REMARK 500 LYS A 359 -59.91 -130.62 REMARK 500 THR A 360 -92.39 -121.04 REMARK 500 ASP B 125 159.39 74.80 REMARK 500 ILE B 134 -63.08 -101.89 REMARK 500 ASN B 138 58.90 -153.05 REMARK 500 PRO B 155 44.75 -82.72 REMARK 500 ILE B 321 76.44 -110.71 REMARK 500 LYS B 359 -59.92 -125.74 REMARK 500 THR B 360 -100.35 -120.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 256 ARG A 257 -139.38 REMARK 500 LEU A 347 SER A 348 130.28 REMARK 500 LEU B 347 SER B 348 137.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2011 DISTANCE = 5.92 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 2C61 A -8 0 PDB 2C61 2C61 -8 0 DBREF 2C61 A 1 460 UNP Q60187 VATB_METMA 1 460 DBREF 2C61 B -8 0 PDB 2C61 2C61 -8 0 DBREF 2C61 B 1 460 UNP Q60187 VATB_METMA 1 460 SEQRES 1 A 469 MET LYS HIS HIS HIS HIS HIS HIS PRO MET VAL LYS GLU SEQRES 2 A 469 TYR LYS THR ILE THR GLN ILE ALA GLY PRO LEU ILE PHE SEQRES 3 A 469 VAL GLU LYS THR GLU PRO VAL GLY TYR ASN GLU ILE VAL SEQRES 4 A 469 ASN ILE LYS MET GLY ASP GLY THR VAL ARG ARG GLY GLN SEQRES 5 A 469 VAL LEU ASP SER SER ALA ASP ILE VAL VAL VAL GLN VAL SEQRES 6 A 469 PHE GLU GLY THR GLY GLY LEU ASP LYS ASP CYS GLY VAL SEQRES 7 A 469 ILE PHE THR GLY GLU THR LEU LYS LEU PRO ALA SER VAL SEQRES 8 A 469 ASP LEU LEU GLY ARG ILE LEU SER GLY SER GLY GLU PRO SEQRES 9 A 469 ARG ASP GLY GLY PRO ARG ILE VAL PRO ASP GLN LEU LEU SEQRES 10 A 469 ASP ILE ASN GLY ALA ALA MET ASN PRO TYR ALA ARG LEU SEQRES 11 A 469 PRO PRO LYS ASP PHE ILE GLN THR GLY ILE SER THR ILE SEQRES 12 A 469 ASP GLY THR ASN THR LEU VAL ARG GLY GLN LYS LEU PRO SEQRES 13 A 469 ILE PHE SER ALA SER GLY LEU PRO HIS ASN GLU ILE ALA SEQRES 14 A 469 LEU GLN ILE ALA ARG GLN ALA SER VAL PRO GLY SER GLU SEQRES 15 A 469 SER ALA PHE ALA VAL VAL PHE ALA ALA MET GLY ILE THR SEQRES 16 A 469 ASN GLU GLU ALA GLN TYR PHE MET SER ASP PHE GLU LYS SEQRES 17 A 469 THR GLY ALA LEU GLU ARG ALA VAL VAL PHE LEU ASN LEU SEQRES 18 A 469 ALA ASP ASP PRO ALA VAL GLU ARG ILE VAL THR PRO ARG SEQRES 19 A 469 MET ALA LEU THR ALA ALA GLU TYR LEU ALA TYR GLU HIS SEQRES 20 A 469 GLY MET HIS VAL LEU VAL ILE LEU THR ASP ILE THR ASN SEQRES 21 A 469 TYR ALA GLU ALA LEU ARG GLN MET GLY ALA ALA ARG ASN SEQRES 22 A 469 GLU VAL PRO GLY ARG ARG GLY TYR PRO GLY TYR MET TYR SEQRES 23 A 469 THR ASP LEU ALA THR LEU TYR GLU ARG ALA GLY ILE VAL SEQRES 24 A 469 LYS GLY ALA LYS GLY SER VAL THR GLN ILE PRO ILE LEU SEQRES 25 A 469 SER MET PRO GLY ASP ASP ILE THR HIS PRO ILE PRO ASP SEQRES 26 A 469 LEU SER GLY TYR ILE THR GLU GLY GLN ILE VAL VAL ALA SEQRES 27 A 469 ARG GLU LEU HIS ARG LYS GLY ILE TYR PRO PRO ILE ASN SEQRES 28 A 469 VAL LEU PRO SER LEU SER ARG LEU MET ASN SER GLY ILE SEQRES 29 A 469 GLY ALA GLY LYS THR ARG GLU ASP HIS LYS ALA VAL SER SEQRES 30 A 469 ASP GLN MET TYR ALA GLY TYR ALA GLU GLY ARG ASP LEU SEQRES 31 A 469 ARG GLY LEU VAL ALA ILE VAL GLY LYS GLU ALA LEU SER SEQRES 32 A 469 GLU ARG ASP THR LYS PHE LEU GLU PHE ALA ASP LEU PHE SEQRES 33 A 469 GLU ASP LYS PHE VAL ARG GLN GLY ARG ASN GLU ASN ARG SEQRES 34 A 469 THR ILE GLU ASP THR LEU GLU ILE GLY TRP GLN ILE LEU SEQRES 35 A 469 THR HIS LEU PRO GLU ASN GLN LEU GLY ARG ILE ASP ASN SEQRES 36 A 469 LYS TYR ILE GLN LYS TYR HIS PRO ALA HIS ARG LYS ALA SEQRES 37 A 469 LYS SEQRES 1 B 469 MET LYS HIS HIS HIS HIS HIS HIS PRO MET VAL LYS GLU SEQRES 2 B 469 TYR LYS THR ILE THR GLN ILE ALA GLY PRO LEU ILE PHE SEQRES 3 B 469 VAL GLU LYS THR GLU PRO VAL GLY TYR ASN GLU ILE VAL SEQRES 4 B 469 ASN ILE LYS MET GLY ASP GLY THR VAL ARG ARG GLY GLN SEQRES 5 B 469 VAL LEU ASP SER SER ALA ASP ILE VAL VAL VAL GLN VAL SEQRES 6 B 469 PHE GLU GLY THR GLY GLY LEU ASP LYS ASP CYS GLY VAL SEQRES 7 B 469 ILE PHE THR GLY GLU THR LEU LYS LEU PRO ALA SER VAL SEQRES 8 B 469 ASP LEU LEU GLY ARG ILE LEU SER GLY SER GLY GLU PRO SEQRES 9 B 469 ARG ASP GLY GLY PRO ARG ILE VAL PRO ASP GLN LEU LEU SEQRES 10 B 469 ASP ILE ASN GLY ALA ALA MET ASN PRO TYR ALA ARG LEU SEQRES 11 B 469 PRO PRO LYS ASP PHE ILE GLN THR GLY ILE SER THR ILE SEQRES 12 B 469 ASP GLY THR ASN THR LEU VAL ARG GLY GLN LYS LEU PRO SEQRES 13 B 469 ILE PHE SER ALA SER GLY LEU PRO HIS ASN GLU ILE ALA SEQRES 14 B 469 LEU GLN ILE ALA ARG GLN ALA SER VAL PRO GLY SER GLU SEQRES 15 B 469 SER ALA PHE ALA VAL VAL PHE ALA ALA MET GLY ILE THR SEQRES 16 B 469 ASN GLU GLU ALA GLN TYR PHE MET SER ASP PHE GLU LYS SEQRES 17 B 469 THR GLY ALA LEU GLU ARG ALA VAL VAL PHE LEU ASN LEU SEQRES 18 B 469 ALA ASP ASP PRO ALA VAL GLU ARG ILE VAL THR PRO ARG SEQRES 19 B 469 MET ALA LEU THR ALA ALA GLU TYR LEU ALA TYR GLU HIS SEQRES 20 B 469 GLY MET HIS VAL LEU VAL ILE LEU THR ASP ILE THR ASN SEQRES 21 B 469 TYR ALA GLU ALA LEU ARG GLN MET GLY ALA ALA ARG ASN SEQRES 22 B 469 GLU VAL PRO GLY ARG ARG GLY TYR PRO GLY TYR MET TYR SEQRES 23 B 469 THR ASP LEU ALA THR LEU TYR GLU ARG ALA GLY ILE VAL SEQRES 24 B 469 LYS GLY ALA LYS GLY SER VAL THR GLN ILE PRO ILE LEU SEQRES 25 B 469 SER MET PRO GLY ASP ASP ILE THR HIS PRO ILE PRO ASP SEQRES 26 B 469 LEU SER GLY TYR ILE THR GLU GLY GLN ILE VAL VAL ALA SEQRES 27 B 469 ARG GLU LEU HIS ARG LYS GLY ILE TYR PRO PRO ILE ASN SEQRES 28 B 469 VAL LEU PRO SER LEU SER ARG LEU MET ASN SER GLY ILE SEQRES 29 B 469 GLY ALA GLY LYS THR ARG GLU ASP HIS LYS ALA VAL SER SEQRES 30 B 469 ASP GLN MET TYR ALA GLY TYR ALA GLU GLY ARG ASP LEU SEQRES 31 B 469 ARG GLY LEU VAL ALA ILE VAL GLY LYS GLU ALA LEU SER SEQRES 32 B 469 GLU ARG ASP THR LYS PHE LEU GLU PHE ALA ASP LEU PHE SEQRES 33 B 469 GLU ASP LYS PHE VAL ARG GLN GLY ARG ASN GLU ASN ARG SEQRES 34 B 469 THR ILE GLU ASP THR LEU GLU ILE GLY TRP GLN ILE LEU SEQRES 35 B 469 THR HIS LEU PRO GLU ASN GLN LEU GLY ARG ILE ASP ASN SEQRES 36 B 469 LYS TYR ILE GLN LYS TYR HIS PRO ALA HIS ARG LYS ALA SEQRES 37 B 469 LYS FORMUL 3 HOH *748(H2 O) HELIX 1 1 SER A 81 LEU A 85 5 5 HELIX 2 2 ILE A 131 GLY A 136 1 6 HELIX 3 3 PRO A 155 ALA A 167 1 13 HELIX 4 4 THR A 186 GLY A 201 1 16 HELIX 5 5 ALA A 202 GLU A 204 5 3 HELIX 6 6 PRO A 216 GLY A 239 1 24 HELIX 7 7 ASP A 248 ARG A 257 1 10 HELIX 8 8 GLN A 258 ARG A 263 5 6 HELIX 9 9 GLY A 274 GLU A 285 1 12 HELIX 10 10 LEU A 317 THR A 322 5 6 HELIX 11 11 ALA A 329 LYS A 335 1 7 HELIX 12 12 LEU A 350 GLY A 354 5 5 HELIX 13 13 ASP A 363 GLY A 389 1 27 HELIX 14 14 LYS A 390 LEU A 393 5 4 HELIX 15 15 SER A 394 PHE A 411 1 18 HELIX 16 16 THR A 421 THR A 434 1 14 HELIX 17 17 PRO A 437 LEU A 441 5 5 HELIX 18 18 ASP A 445 HIS A 453 1 9 HELIX 19 19 SER B 81 LEU B 85 5 5 HELIX 20 20 ILE B 131 GLY B 136 1 6 HELIX 21 21 PRO B 155 ALA B 167 1 13 HELIX 22 22 THR B 186 GLY B 201 1 16 HELIX 23 23 ALA B 202 GLU B 204 5 3 HELIX 24 24 PRO B 216 GLY B 239 1 24 HELIX 25 25 ASP B 248 MET B 259 1 12 HELIX 26 26 TYR B 275 GLU B 285 1 11 HELIX 27 27 LEU B 317 ILE B 321 5 5 HELIX 28 28 ALA B 329 LYS B 335 1 7 HELIX 29 29 LEU B 350 ILE B 355 5 6 HELIX 30 30 ASP B 363 GLY B 389 1 27 HELIX 31 31 LYS B 390 LEU B 393 5 4 HELIX 32 32 SER B 394 PHE B 411 1 18 HELIX 33 33 THR B 421 THR B 434 1 14 HELIX 34 34 PRO B 437 LEU B 441 5 5 HELIX 35 35 ASP B 445 HIS B 453 1 9 SHEET 1 AA 5 LEU A 15 GLU A 19 0 SHEET 2 AA 5 ILE A 51 VAL A 56 -1 O VAL A 52 N VAL A 18 SHEET 3 AA 5 VAL A 39 SER A 47 -1 O GLN A 43 N GLN A 55 SHEET 4 AA 5 ILE A 29 LYS A 33 -1 O VAL A 30 N GLY A 42 SHEET 5 AA 5 THR A 72 GLU A 74 1 O GLY A 73 N LYS A 33 SHEET 1 AB 2 LYS A 77 ALA A 80 0 SHEET 2 AB 2 GLN A 106 ASP A 109 -1 O GLN A 106 N ALA A 80 SHEET 1 AC 8 ILE A 88 SER A 90 0 SHEET 2 AC 8 ALA A 206 LEU A 212 1 O VAL A 208 N LEU A 89 SHEET 3 AC 8 PHE A 176 ILE A 185 1 O VAL A 178 N VAL A 207 SHEET 4 AC 8 HIS A 241 THR A 247 1 O HIS A 241 N ALA A 177 SHEET 5 AC 8 SER A 296 SER A 304 1 O SER A 296 N VAL A 242 SHEET 6 AC 8 ILE A 148 SER A 150 1 O ILE A 148 N LEU A 303 SHEET 7 AC 8 GLY A 324 VAL A 327 1 O ILE A 326 N PHE A 149 SHEET 8 AC 8 LEU A 347 SER A 348 -1 O LEU A 347 N GLN A 325 SHEET 1 AD 6 ILE A 88 SER A 90 0 SHEET 2 AD 6 ALA A 206 LEU A 212 1 O VAL A 208 N LEU A 89 SHEET 3 AD 6 PHE A 176 ILE A 185 1 O VAL A 178 N VAL A 207 SHEET 4 AD 6 HIS A 241 THR A 247 1 O HIS A 241 N ALA A 177 SHEET 5 AD 6 SER A 296 SER A 304 1 O SER A 296 N VAL A 242 SHEET 6 AD 6 GLY A 288 ILE A 289 -1 O GLY A 288 N VAL A 297 SHEET 1 BA 5 LEU B 15 GLU B 19 0 SHEET 2 BA 5 ILE B 51 VAL B 56 -1 O VAL B 52 N VAL B 18 SHEET 3 BA 5 VAL B 39 SER B 47 -1 O GLN B 43 N GLN B 55 SHEET 4 BA 5 ILE B 29 LYS B 33 -1 O VAL B 30 N GLY B 42 SHEET 5 BA 5 PHE B 71 GLU B 74 1 O PHE B 71 N ASN B 31 SHEET 1 BB 2 LYS B 77 ALA B 80 0 SHEET 2 BB 2 GLN B 106 ASP B 109 -1 O GLN B 106 N ALA B 80 SHEET 1 BC 8 ARG B 87 SER B 90 0 SHEET 2 BC 8 ALA B 206 LEU B 212 1 O VAL B 208 N LEU B 89 SHEET 3 BC 8 PHE B 176 ILE B 185 1 O VAL B 178 N VAL B 207 SHEET 4 BC 8 HIS B 241 THR B 247 1 O HIS B 241 N ALA B 177 SHEET 5 BC 8 SER B 296 MET B 305 1 O SER B 296 N VAL B 242 SHEET 6 BC 8 ILE B 148 ALA B 151 1 O ILE B 148 N LEU B 303 SHEET 7 BC 8 GLY B 324 VAL B 327 1 O ILE B 326 N PHE B 149 SHEET 8 BC 8 LEU B 347 SER B 348 -1 O LEU B 347 N GLN B 325 SHEET 1 BD 6 ARG B 87 SER B 90 0 SHEET 2 BD 6 ALA B 206 LEU B 212 1 O VAL B 208 N LEU B 89 SHEET 3 BD 6 PHE B 176 ILE B 185 1 O VAL B 178 N VAL B 207 SHEET 4 BD 6 HIS B 241 THR B 247 1 O HIS B 241 N ALA B 177 SHEET 5 BD 6 SER B 296 MET B 305 1 O SER B 296 N VAL B 242 SHEET 6 BD 6 GLY B 288 ILE B 289 -1 O GLY B 288 N VAL B 297 SHEET 1 BE 2 LYS B 124 PHE B 126 0 SHEET 2 BE 2 VAL B 141 ARG B 142 -1 O ARG B 142 N LYS B 124 CISPEP 1 THR A 247 ASP A 248 0 2.70 CISPEP 2 TYR A 338 PRO A 339 0 -8.75 CISPEP 3 THR B 247 ASP B 248 0 2.39 CISPEP 4 TYR B 338 PRO B 339 0 -7.81 CRYST1 73.623 96.418 130.715 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013583 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007650 0.00000 MTRIX1 1 -0.327700 -0.944000 0.037600 25.47000 1 MTRIX2 1 -0.944800 0.327300 -0.016680 17.18000 1 MTRIX3 1 0.003430 -0.041000 -0.999200 -46.45000 1