HEADER OXIDOREDUCTASE 24-NOV-05 2C7G TITLE FPRA FROM MYCOBACTERIUM TUBERCULOSIS: HIS57GLN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH-FERREDOXIN REDUCTASE FPRA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPRA, NFR; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS FAD, FLAVOPROTEIN, NADP, OXIDOREDUCTASE, TUBERCULOSIS, NAP+ KEYWDS 2 DERIVATIVE EXPDTA X-RAY DIFFRACTION AUTHOR A.PENNATI,A.RAZETO,M.DE ROSA,V.PANDINI,M.A.VANONI,A.ALIVERTI, AUTHOR 2 A.MATTEVI,A.CODA,G.ZANETTI REVDAT 3 13-DEC-23 2C7G 1 REMARK LINK REVDAT 2 24-FEB-09 2C7G 1 VERSN REVDAT 1 26-JUL-06 2C7G 0 JRNL AUTH A.PENNATI,A.RAZETO,M.DE ROSA,V.PANDINI,M.A.VANONI,A.MATTEVI, JRNL AUTH 2 A.CODA,A.ALIVERTI,G.ZANETTI JRNL TITL ROLE OF THE HIS57-GLU214 IONIC COUPLE LOCATED IN THE ACTIVE JRNL TITL 2 SITE OF MYCOBACTERIUM TUBERCULOSIS FPRA. JRNL REF BIOCHEMISTRY V. 45 8712 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16846214 JRNL DOI 10.1021/BI060369M REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 42801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2969 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.530 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3587 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4898 ; 1.338 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.475 ;23.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;12.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2725 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1726 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2453 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 525 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2302 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3611 ; 1.046 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 1.676 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1287 ; 2.691 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290026540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1LQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 73.41200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.41200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.52000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 146.82400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2453 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 57 TO GLN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 399 REMARK 465 GLU A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 59 CD CE NZ REMARK 470 LYS A 65 CD CE NZ REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 ARG A 175 NE CZ NH1 NH2 REMARK 470 ARG A 189 NE CZ NH1 NH2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LYS A 243 CE NZ REMARK 470 LYS A 246 CD CE NZ REMARK 470 LYS A 250 CE NZ REMARK 470 GLN A 405 CD OE1 NE2 REMARK 470 GLU A 435 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 46 -6.35 100.23 REMARK 500 ARG A 200 -163.54 -100.30 REMARK 500 SER A 321 62.03 -114.84 REMARK 500 ASN A 353 15.79 -140.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2056 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2106 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A2175 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ODP A 502 O99 122.3 REMARK 620 3 HOH A2612 O 136.7 89.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ODP A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LQT RELATED DB: PDB REMARK 900 A COVALENT MODIFICATION OF NADP+ REVEALED BY THE ATOMICRESOLUTION REMARK 900 STRUCTURE OF FPRA, A MYCOBACTERIUM TUBERCULOSISOXIDOREDUCTASE REMARK 900 RELATED ID: 1LQU RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS FPRA IN COMPLEX WITH NADPH DBREF 2C7G A 1 456 UNP O05783 FPRA_MYCTU 1 456 SEQADV 2C7G GLN A 57 UNP O05783 HIS 57 ENGINEERED MUTATION SEQRES 1 A 456 MET ARG PRO TYR TYR ILE ALA ILE VAL GLY SER GLY PRO SEQRES 2 A 456 SER ALA PHE PHE ALA ALA ALA SER LEU LEU LYS ALA ALA SEQRES 3 A 456 ASP THR THR GLU ASP LEU ASP MET ALA VAL ASP MET LEU SEQRES 4 A 456 GLU MET LEU PRO THR PRO TRP GLY LEU VAL ARG SER GLY SEQRES 5 A 456 VAL ALA PRO ASP GLN PRO LYS ILE LYS SER ILE SER LYS SEQRES 6 A 456 GLN PHE GLU LYS THR ALA GLU ASP PRO ARG PHE ARG PHE SEQRES 7 A 456 PHE GLY ASN VAL VAL VAL GLY GLU HIS VAL GLN PRO GLY SEQRES 8 A 456 GLU LEU SER GLU ARG TYR ASP ALA VAL ILE TYR ALA VAL SEQRES 9 A 456 GLY ALA GLN SER ASP ARG MET LEU ASN ILE PRO GLY GLU SEQRES 10 A 456 ASP LEU PRO GLY SER ILE ALA ALA VAL ASP PHE VAL GLY SEQRES 11 A 456 TRP TYR ASN ALA HIS PRO HIS PHE GLU GLN VAL SER PRO SEQRES 12 A 456 ASP LEU SER GLY ALA ARG ALA VAL VAL ILE GLY ASN GLY SEQRES 13 A 456 ASN VAL ALA LEU ASP VAL ALA ARG ILE LEU LEU THR ASP SEQRES 14 A 456 PRO ASP VAL LEU ALA ARG THR ASP ILE ALA ASP HIS ALA SEQRES 15 A 456 LEU GLU SER LEU ARG PRO ARG GLY ILE GLN GLU VAL VAL SEQRES 16 A 456 ILE VAL GLY ARG ARG GLY PRO LEU GLN ALA ALA PHE THR SEQRES 17 A 456 THR LEU GLU LEU ARG GLU LEU ALA ASP LEU ASP GLY VAL SEQRES 18 A 456 ASP VAL VAL ILE ASP PRO ALA GLU LEU ASP GLY ILE THR SEQRES 19 A 456 ASP GLU ASP ALA ALA ALA VAL GLY LYS VAL CYS LYS GLN SEQRES 20 A 456 ASN ILE LYS VAL LEU ARG GLY TYR ALA ASP ARG GLU PRO SEQRES 21 A 456 ARG PRO GLY HIS ARG ARG MET VAL PHE ARG PHE LEU THR SEQRES 22 A 456 SER PRO ILE GLU ILE LYS GLY LYS ARG LYS VAL GLU ARG SEQRES 23 A 456 ILE VAL LEU GLY ARG ASN GLU LEU VAL SER ASP GLY SER SEQRES 24 A 456 GLY ARG VAL ALA ALA LYS ASP THR GLY GLU ARG GLU GLU SEQRES 25 A 456 LEU PRO ALA GLN LEU VAL VAL ARG SER VAL GLY TYR ARG SEQRES 26 A 456 GLY VAL PRO THR PRO GLY LEU PRO PHE ASP ASP GLN SER SEQRES 27 A 456 GLY THR ILE PRO ASN VAL GLY GLY ARG ILE ASN GLY SER SEQRES 28 A 456 PRO ASN GLU TYR VAL VAL GLY TRP ILE LYS ARG GLY PRO SEQRES 29 A 456 THR GLY VAL ILE GLY THR ASN LYS LYS ASP ALA GLN ASP SEQRES 30 A 456 THR VAL ASP THR LEU ILE LYS ASN LEU GLY ASN ALA LYS SEQRES 31 A 456 GLU GLY ALA GLU CYS LYS SER PHE PRO GLU ASP HIS ALA SEQRES 32 A 456 ASP GLN VAL ALA ASP TRP LEU ALA ALA ARG GLN PRO LYS SEQRES 33 A 456 LEU VAL THR SER ALA HIS TRP GLN VAL ILE ASP ALA PHE SEQRES 34 A 456 GLU ARG ALA ALA GLY GLU PRO HIS GLY ARG PRO ARG VAL SEQRES 35 A 456 LYS LEU ALA SER LEU ALA GLU LEU LEU ARG ILE GLY LEU SEQRES 36 A 456 GLY HET FAD A 501 53 HET ODP A 502 49 HET NA A 503 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ODP 4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 ODP C21 H29 N7 O18 P3 1+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *630(H2 O) HELIX 1 1 GLY A 12 THR A 29 1 18 HELIX 2 2 GLY A 47 GLY A 52 1 6 HELIX 3 3 GLN A 57 SER A 62 1 6 HELIX 4 4 ILE A 63 GLU A 72 1 10 HELIX 5 5 GLN A 89 TYR A 97 1 9 HELIX 6 6 ALA A 125 ASN A 133 1 9 HELIX 7 7 HIS A 135 GLU A 139 5 5 HELIX 8 8 GLY A 156 THR A 168 1 13 HELIX 9 9 ASP A 169 ALA A 174 1 6 HELIX 10 10 ALA A 179 ARG A 187 1 9 HELIX 11 11 GLY A 201 ALA A 205 5 5 HELIX 12 12 THR A 208 GLU A 214 1 7 HELIX 13 13 LEU A 215 LEU A 218 5 4 HELIX 14 14 ASP A 226 LEU A 230 5 5 HELIX 15 15 THR A 234 GLY A 242 1 9 HELIX 16 16 GLY A 242 ASP A 257 1 16 HELIX 17 17 GLY A 358 GLY A 363 1 6 HELIX 18 18 VAL A 367 GLY A 369 5 3 HELIX 19 19 THR A 370 GLY A 392 1 23 HELIX 20 20 ASP A 401 GLN A 414 1 14 HELIX 21 21 SER A 420 GLU A 435 1 16 HELIX 22 22 PRO A 436 GLY A 438 5 3 HELIX 23 23 SER A 446 LEU A 455 1 10 SHEET 1 AA 6 GLU A 354 VAL A 356 0 SHEET 2 AA 6 ALA A 99 TYR A 102 1 O VAL A 100 N TYR A 355 SHEET 3 AA 6 TYR A 4 VAL A 9 1 O ALA A 7 N ILE A 101 SHEET 4 AA 6 MET A 34 LEU A 39 1 O ALA A 35 N ILE A 6 SHEET 5 AA 6 PHE A 76 GLY A 80 1 O ARG A 77 N MET A 38 SHEET 6 AA 6 VAL A 418 THR A 419 -1 O VAL A 418 N GLY A 80 SHEET 1 AB 2 SER A 108 ASP A 109 0 SHEET 2 AB 2 TYR A 324 ARG A 325 -1 O ARG A 325 N SER A 108 SHEET 1 AC 6 SER A 122 ALA A 124 0 SHEET 2 AC 6 LEU A 317 ARG A 320 1 O VAL A 318 N ILE A 123 SHEET 3 AC 6 ARG A 149 ILE A 153 1 O VAL A 151 N VAL A 319 SHEET 4 AC 6 GLU A 193 VAL A 197 1 O GLU A 193 N ALA A 150 SHEET 5 AC 6 ARG A 266 ARG A 270 1 O ARG A 266 N VAL A 194 SHEET 6 AC 6 ASP A 222 VAL A 224 1 O ASP A 222 N MET A 267 SHEET 1 AD 3 THR A 273 LYS A 279 0 SHEET 2 AD 3 ARG A 286 SER A 296 -1 O ARG A 286 N LYS A 279 SHEET 3 AD 3 VAL A 302 PRO A 314 -1 O ALA A 303 N VAL A 295 SHEET 1 AE 2 ASN A 343 VAL A 344 0 SHEET 2 AE 2 ARG A 347 ILE A 348 -1 O ARG A 347 N VAL A 344 LINK OD1 ASP A 161 NA NA A 503 1555 1555 2.34 LINK O99 ODP A 502 NA NA A 503 1555 1555 2.20 LINK NA NA A 503 O HOH A2612 1555 1555 2.36 SITE 1 AC1 5 ASP A 161 ODP A 502 HOH A2269 HOH A2272 SITE 2 AC1 5 HOH A2612 SITE 1 AC2 36 GLY A 10 GLY A 12 PRO A 13 SER A 14 SITE 2 AC2 36 GLU A 40 MET A 41 GLY A 47 LEU A 48 SITE 3 AC2 36 GLY A 52 VAL A 53 ILE A 60 VAL A 82 SITE 4 AC2 36 VAL A 84 ALA A 103 VAL A 104 GLY A 105 SITE 5 AC2 36 GLN A 107 TYR A 324 GLY A 358 TRP A 359 SITE 6 AC2 36 GLY A 366 VAL A 367 ILE A 368 ASN A 371 SITE 7 AC2 36 ODP A 502 HOH A2069 HOH A2177 HOH A2182 SITE 8 AC2 36 HOH A2476 HOH A2514 HOH A2609 HOH A2610 SITE 9 AC2 36 HOH A2611 HOH A2612 HOH A2613 HOH A2614 SITE 1 AC3 38 ARG A 110 ILE A 153 ASN A 155 GLY A 156 SITE 2 AC3 38 ASN A 157 VAL A 158 ARG A 199 ARG A 200 SITE 3 AC3 38 ALA A 206 GLU A 211 SER A 321 VAL A 322 SITE 4 AC3 38 TRP A 359 PRO A 364 THR A 365 GLY A 366 SITE 5 AC3 38 VAL A 367 FAD A 501 NA A 503 HOH A2193 SITE 6 AC3 38 HOH A2196 HOH A2467 HOH A2468 HOH A2615 SITE 7 AC3 38 HOH A2616 HOH A2617 HOH A2618 HOH A2619 SITE 8 AC3 38 HOH A2620 HOH A2621 HOH A2622 HOH A2623 SITE 9 AC3 38 HOH A2625 HOH A2626 HOH A2627 HOH A2628 SITE 10 AC3 38 HOH A2629 HOH A2630 CRYST1 146.824 81.040 41.084 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024340 0.00000