HEADER UBIQUITIN-LIKE PROTEIN 24-NOV-05 2C7H TITLE SOLUTION NMR STRUCTURE OF THE DWNN DOMAIN FROM HUMAN RBBP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6, ISOFORM 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DWNN, RESIDUES 1-81; COMPND 5 SYNONYM: RBBP6; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL 5 RESIDUES ARE ARTIFACTS OF THE PGEX-6P-2 COMPND 8 CLONING VECTOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS RBBP6, P53-ASSOCIATED, MRNA PROCESSING, SPLICING-ASSOCIATED, KEYWDS 2 OESOPHAGEAL CANCER, UBIQUITIN-LIKE PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR D.J.R.PUGH,E.AB,A.FARO,P.T.LUTYA,E.HOFFMANN,D.J.G.REES REVDAT 3 15-MAY-24 2C7H 1 REMARK REVDAT 2 24-FEB-09 2C7H 1 VERSN REVDAT 1 19-JAN-06 2C7H 0 JRNL AUTH D.J.R.PUGH,E.AB,A.FARO,P.T.LUTYA,E.HOFFMANN,D.J.G.REES JRNL TITL DWNN, A NOVEL UBIQUITIN-LIKE DOMAIN, IMPLICATES RBBP6 IN JRNL TITL 2 MRNA PROCESSING AND UBIQUITIN-LIKE PATHWAYS JRNL REF BMC STRUCT.BIOL. V. 6 1 2006 JRNL REFN ESSN 1472-6807 JRNL PMID 16396680 JRNL DOI 10.1186/1472-6807-6-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FINAL SET OF NOE-BASED RESTRAINTS, REMARK 3 TOGETHER WITH DIHEDRAL RESTRAINTS FOR 90 RESIDUES, WERE USED FOR REMARK 3 REFINEMENT IN EXPLICIT SOLVENT USING CNS, ACCORDING TO THE REMARK 3 STANDARD RECOORD PROTOCOL. REMARK 4 REMARK 4 2C7H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290026434. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO; CBCACONH; CBCANH; HCCH REMARK 210 -TOCSY; HCCH-COSY; HNH- HSQC- REMARK 210 TOCSY; HNH-HSQC-NOESY; HCH-HSQC- REMARK 210 NOESY; HH-NOESY; HMQC-J; HN- REMARK 210 EXCHANGE; HH- NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CANDID, CYANA, CNS, REMARK 210 RECOORD REMARK 210 METHOD USED : AUTOMATED NOE ASSIGNMENT USING REMARK 210 CANDID REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON A 15N,13C-LABELLED SAMPLE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 27 -41.08 -152.58 REMARK 500 1 LYS A 43 72.30 77.75 REMARK 500 2 PRO A 2 -157.01 -93.95 REMARK 500 3 LEU A 27 -41.32 -148.50 REMARK 500 5 MET A 6 -170.87 64.25 REMARK 500 5 LEU A 17 -52.78 74.04 REMARK 500 5 LYS A 43 70.93 60.75 REMARK 500 7 SER A 5 80.45 57.47 REMARK 500 7 LEU A 17 -51.78 73.65 REMARK 500 7 LYS A 43 70.14 80.40 REMARK 500 8 MET A 6 98.67 55.94 REMARK 500 8 LYS A 16 -39.23 -177.81 REMARK 500 8 LEU A 17 -52.53 76.71 REMARK 500 8 LYS A 43 45.02 71.75 REMARK 500 10 PRO A 2 41.86 -82.57 REMARK 500 10 LEU A 27 -45.75 -140.90 REMARK 500 10 ASP A 48 -40.84 -130.23 REMARK 500 11 LEU A 27 -42.45 -145.02 REMARK 500 11 ASP A 48 -47.20 -133.36 REMARK 500 12 PRO A 2 47.84 -76.54 REMARK 500 12 SER A 5 -62.03 -165.87 REMARK 500 12 ASP A 48 -45.19 -130.57 REMARK 500 13 LYS A 43 65.63 75.37 REMARK 500 14 MET A 6 -164.13 60.20 REMARK 500 15 MET A 6 173.73 63.96 REMARK 500 16 SER A 5 24.03 -149.62 REMARK 500 16 MET A 6 113.13 58.85 REMARK 500 16 LYS A 43 66.96 66.93 REMARK 500 16 THR A 63 -36.80 74.41 REMARK 500 17 LYS A 43 68.50 66.22 REMARK 500 19 LYS A 43 62.29 71.71 REMARK 500 20 LEU A 27 -45.23 -131.48 REMARK 500 20 LYS A 43 68.23 67.35 REMARK 500 21 PRO A 2 -70.76 -67.53 REMARK 500 21 SER A 5 35.47 -144.83 REMARK 500 21 LYS A 43 65.92 71.21 REMARK 500 22 LEU A 3 -82.73 69.76 REMARK 500 22 LEU A 27 -41.11 -149.14 REMARK 500 24 SER A 5 85.31 62.53 REMARK 500 24 LEU A 17 -47.31 71.89 REMARK 500 24 LYS A 43 67.06 76.66 REMARK 500 25 LYS A 43 66.13 61.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 79 0.09 SIDE CHAIN REMARK 500 14 ARG A 41 0.08 SIDE CHAIN REMARK 500 20 ARG A 41 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2C7H A 1 5 PDB 2C7H 2C7H 1 5 DBREF 2C7H A 6 86 UNP Q8N0V2 Q8N0V2_HUMAN 1 81 SEQRES 1 A 86 GLY PRO LEU GLY SER MET SER CYS VAL HIS TYR LYS PHE SEQRES 2 A 86 SER SER LYS LEU ASN TYR ASP THR VAL THR PHE ASP GLY SEQRES 3 A 86 LEU HIS ILE SER LEU CYS ASP LEU LYS LYS GLN ILE MET SEQRES 4 A 86 GLY ARG GLU LYS LEU LYS ALA ALA ASP CYS ASP LEU GLN SEQRES 5 A 86 ILE THR ASN ALA GLN THR LYS GLU GLU TYR THR ASP ASP SEQRES 6 A 86 ASN ALA LEU ILE PRO LYS ASN SER SER VAL ILE VAL ARG SEQRES 7 A 86 ARG ILE PRO ILE GLY GLY VAL LYS HELIX 1 1 LEU A 31 LYS A 43 1 13 SHEET 1 AA 5 TYR A 19 PHE A 24 0 SHEET 2 AA 5 SER A 7 PHE A 13 -1 O SER A 7 N PHE A 24 SHEET 3 AA 5 VAL A 75 PRO A 81 1 O VAL A 75 N LYS A 12 SHEET 4 AA 5 CYS A 49 ASN A 55 -1 O ASP A 50 N ILE A 80 SHEET 5 AA 5 GLU A 61 TYR A 62 -1 O TYR A 62 N ILE A 53 SHEET 1 AB 2 HIS A 28 SER A 30 0 SHEET 2 AB 2 LEU A 68 PRO A 70 -1 O ILE A 69 N ILE A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1