HEADER TRANSFERASE 30-NOV-05 2C7Y TITLE PLANT ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETOACYL-COA THIOLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 38-441; COMPND 5 SYNONYM: BETA-KETOTHIOLASE 2, ACETYL-COA ACYLTRANSFERASE 2, COMPND 6 PEROXISOMAL 3-OXOACYL-COA THIOLASE 2, PEROXISOME DEFECTIVE PROTEIN 1; COMPND 7 EC: 2.3.1.16; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS FATTY ACID METABOLISM, TRANSFERASE, OXYLIPIN SYNTHESIS, LIPID KEYWDS 2 SYNTHESIS, ACYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SUNDARAMOORTHY,E.MICOSSI,M.S.ALPHEY,V.GERMAIN,J.H.BRYCE,S.M.SMITH, AUTHOR 2 G.A.LEONARD,W.N.HUNTER REVDAT 4 13-DEC-23 2C7Y 1 REMARK REVDAT 3 13-JUL-11 2C7Y 1 VERSN REVDAT 2 24-FEB-09 2C7Y 1 VERSN REVDAT 1 18-MAY-06 2C7Y 0 JRNL AUTH R.SUNDARAMOORTHY,E.MICOSSI,M.S.ALPHEY,V.GERMAIN,J.H.BRYCE, JRNL AUTH 2 S.M.SMITH,G.A.LEONARD,W.N.HUNTER JRNL TITL THE CRYSTAL STRUCTURE OF A PLANT 3-KETOACYL-COA THIOLASE JRNL TITL 2 REVEALS THE POTENTIAL FOR REDOX CONTROL OF PEROXISOMAL FATTY JRNL TITL 3 ACID BETA-OXIDATION. JRNL REF J.MOL.BIOL. V. 359 347 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16630629 JRNL DOI 10.1016/J.JMB.2006.03.032 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 41208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 511 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5838 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7909 ; 1.309 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 787 ; 5.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;35.281 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 956 ;16.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;21.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 923 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4376 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2877 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3991 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 412 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4005 ; 0.513 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6218 ; 0.862 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2019 ; 1.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1690 ; 2.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 38 A 441 4 REMARK 3 1 B 39 B 441 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2822 ; 0.32 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 2822 ; 0.32 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2822 ; 0.55 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2822 ; 0.55 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6610 33.0990 6.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: -0.1013 REMARK 3 T33: -0.1099 T12: 0.0321 REMARK 3 T13: -0.0037 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.5961 L22: 1.6238 REMARK 3 L33: 1.4149 L12: -0.5530 REMARK 3 L13: -0.5367 L23: 0.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.1173 S13: 0.0612 REMARK 3 S21: -0.2413 S22: 0.0235 S23: 0.0174 REMARK 3 S31: 0.2405 S32: 0.0015 S33: 0.0077 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4210 41.9920 -0.6520 REMARK 3 T TENSOR REMARK 3 T11: -0.0049 T22: 0.0283 REMARK 3 T33: 0.1104 T12: 0.0663 REMARK 3 T13: 0.1124 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 6.8487 L22: 4.9653 REMARK 3 L33: 3.4117 L12: 0.9080 REMARK 3 L13: -1.1056 L23: 1.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.4120 S13: 1.1157 REMARK 3 S21: -0.5977 S22: 0.1638 S23: -0.3039 REMARK 3 S31: -0.1998 S32: 0.3688 S33: -0.2317 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2780 35.7370 18.4620 REMARK 3 T TENSOR REMARK 3 T11: -0.0751 T22: -0.0731 REMARK 3 T33: -0.1200 T12: 0.0711 REMARK 3 T13: 0.0022 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.6869 L22: 1.5937 REMARK 3 L33: 1.5355 L12: -0.3384 REMARK 3 L13: -0.4534 L23: 0.2422 REMARK 3 S TENSOR REMARK 3 S11: -0.1320 S12: -0.2256 S13: 0.1250 REMARK 3 S21: 0.0348 S22: 0.1240 S23: -0.1453 REMARK 3 S31: 0.2191 S32: 0.2026 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 259 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4000 61.6910 5.6680 REMARK 3 T TENSOR REMARK 3 T11: -0.0825 T22: -0.1244 REMARK 3 T33: -0.1164 T12: -0.0053 REMARK 3 T13: -0.0141 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.5543 L22: 1.2307 REMARK 3 L33: 1.0345 L12: -0.5779 REMARK 3 L13: 0.1789 L23: -0.3267 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.1077 S13: -0.1115 REMARK 3 S21: -0.1752 S22: 0.0367 S23: 0.0767 REMARK 3 S31: -0.0147 S32: -0.0055 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 260 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5400 52.3360 1.4420 REMARK 3 T TENSOR REMARK 3 T11: -0.0138 T22: -0.0058 REMARK 3 T33: 0.1955 T12: 0.0049 REMARK 3 T13: -0.1024 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.6435 L22: 3.6550 REMARK 3 L33: 0.4726 L12: -1.2432 REMARK 3 L13: -0.4586 L23: -0.2634 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 0.3529 S13: -0.8493 REMARK 3 S21: -0.6941 S22: -0.0259 S23: 0.6116 REMARK 3 S31: 0.1941 S32: -0.0418 S33: -0.0402 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 293 B 441 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4350 59.6380 19.1970 REMARK 3 T TENSOR REMARK 3 T11: -0.1392 T22: -0.0677 REMARK 3 T33: -0.1189 T12: 0.0419 REMARK 3 T13: 0.0023 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 1.7147 L22: 1.6726 REMARK 3 L33: 1.5478 L12: -0.2067 REMARK 3 L13: 0.1233 L23: -0.1200 REMARK 3 S TENSOR REMARK 3 S11: -0.0992 S12: -0.2371 S13: -0.1995 REMARK 3 S21: 0.0704 S22: 0.1595 S23: 0.1946 REMARK 3 S31: -0.0372 S32: -0.1418 S33: -0.0603 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2228 REMARK 3 RESIDUE RANGE : B 2001 B 2283 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2790 49.2130 11.7550 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: -0.0070 REMARK 3 T33: -0.0927 T12: -0.0158 REMARK 3 T13: -0.0167 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.5098 L22: 0.6852 REMARK 3 L33: 0.6104 L12: -0.4754 REMARK 3 L13: -0.0753 L23: -0.0399 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: 0.0002 S13: -0.0102 REMARK 3 S21: -0.0234 S22: 0.0602 S23: 0.0100 REMARK 3 S31: 0.0614 S32: 0.0192 S33: 0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REGIONS WITH NO DIFFERENCE DENSITY HAVE BEEN LEFT REMARK 3 OUT. NON DEFINED SIDE CHAINS ARE MODELLED WITH ZERO OCCUPANCY. REMARK 4 REMARK 4 2C7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290025639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AFW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% POLYETHYLENE GLYCOL 4000, 0.1M REMARK 280 TRIS-HCL PH 8.5, 300MM MGCL2., PH 7.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.57700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.74950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.23050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.74950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.57700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.23050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 173 REMARK 465 ALA A 174 REMARK 465 TRP A 175 REMARK 465 GLU A 176 REMARK 465 GLY A 177 REMARK 465 SER A 178 REMARK 465 VAL A 179 REMARK 465 ASN A 180 REMARK 465 PRO A 181 REMARK 465 ALA A 182 REMARK 465 VAL A 183 REMARK 465 LYS A 184 REMARK 465 GLY A 441 REMARK 465 ASP B 38 REMARK 465 GLY B 177 REMARK 465 SER B 178 REMARK 465 VAL B 179 REMARK 465 ASN B 180 REMARK 465 PRO B 181 REMARK 465 ALA B 182 REMARK 465 VAL B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 184 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 205 CG CD OE1 NE2 REMARK 480 LYS A 249 CG CD CE NZ REMARK 480 LYS A 254 CG CD CE NZ REMARK 480 LYS A 275 CG CD CE NZ REMARK 480 LYS A 282 CG CD CE NZ REMARK 480 VAL B 203 CG1 CG2 REMARK 480 LYS B 249 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 249 O HOH B 2165 0.82 REMARK 500 O PHE A 156 O HOH A 2094 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 275 CB LYS A 275 CG -0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 99 137.23 -171.51 REMARK 500 GLU A 362 49.54 -108.67 REMARK 500 LEU A 395 -100.00 19.93 REMARK 500 ARG B 67 16.44 83.47 REMARK 500 THR B 243 -156.26 -148.18 REMARK 500 PHE B 280 -66.53 -103.92 REMARK 500 GLU B 362 42.41 -108.41 REMARK 500 ASN B 383 59.32 30.72 REMARK 500 LEU B 395 -102.52 14.33 REMARK 500 ILE B 426 76.48 -114.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2049 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH B2090 DISTANCE = 6.61 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C7Z RELATED DB: PDB REMARK 900 PLANT ENZYME CRYSTAL FORM II DBREF 2C7Y A 38 441 UNP Q9S7M3 THIK2_ARATH 38 441 DBREF 2C7Y B 38 441 UNP Q9S7M3 THIK2_ARATH 38 441 SEQRES 1 A 404 ASP SER ALA ALA TYR GLN ARG THR SER LEU TYR GLY ASP SEQRES 2 A 404 ASP VAL VAL ILE VAL ALA ALA HIS ARG THR PRO LEU CYS SEQRES 3 A 404 LYS SER LYS ARG GLY ASN PHE LYS ASP THR TYR PRO ASP SEQRES 4 A 404 ASP LEU LEU ALA PRO VAL LEU ARG ALA LEU ILE GLU LYS SEQRES 5 A 404 THR ASN LEU ASN PRO SER GLU VAL GLY ASP ILE VAL VAL SEQRES 6 A 404 GLY THR VAL LEU ALA PRO GLY SER GLN ARG ALA SER GLU SEQRES 7 A 404 CYS ARG MET ALA ALA PHE TYR ALA GLY PHE PRO GLU THR SEQRES 8 A 404 VAL ALA VAL ARG THR VAL ASN ARG GLN CYS SER SER GLY SEQRES 9 A 404 LEU GLN ALA VAL ALA ASP VAL ALA ALA ALA ILE LYS ALA SEQRES 10 A 404 GLY PHE TYR ASP ILE GLY ILE GLY ALA GLY LEU GLU SER SEQRES 11 A 404 MET THR THR ASN PRO MET ALA TRP GLU GLY SER VAL ASN SEQRES 12 A 404 PRO ALA VAL LYS LYS PHE ALA GLN ALA GLN ASN CYS LEU SEQRES 13 A 404 LEU PRO MET GLY VAL THR SER GLU ASN VAL ALA GLN ARG SEQRES 14 A 404 PHE GLY VAL SER ARG GLN GLU GLN ASP GLN ALA ALA VAL SEQRES 15 A 404 ASP SER HIS ARG LYS ALA ALA ALA ALA THR ALA ALA GLY SEQRES 16 A 404 LYS PHE LYS ASP GLU ILE ILE PRO VAL LYS THR LYS LEU SEQRES 17 A 404 VAL ASP PRO LYS THR GLY ASP GLU LYS PRO ILE THR VAL SEQRES 18 A 404 SER VAL ASP ASP GLY ILE ARG PRO THR THR THR LEU ALA SEQRES 19 A 404 SER LEU GLY LYS LEU LYS PRO VAL PHE LYS LYS ASP GLY SEQRES 20 A 404 THR THR THR ALA GLY ASN SER SER GLN VAL SER ASP GLY SEQRES 21 A 404 ALA GLY ALA VAL LEU LEU MET LYS ARG SER VAL ALA MET SEQRES 22 A 404 GLN LYS GLY LEU PRO VAL LEU GLY VAL PHE ARG THR PHE SEQRES 23 A 404 ALA ALA VAL GLY VAL ASP PRO ALA ILE MET GLY ILE GLY SEQRES 24 A 404 PRO ALA VAL ALA ILE PRO ALA ALA VAL LYS ALA ALA GLY SEQRES 25 A 404 LEU GLU LEU ASP ASP ILE ASP LEU PHE GLU ILE ASN GLU SEQRES 26 A 404 ALA PHE ALA SER GLN PHE VAL TYR CYS ARG ASN LYS LEU SEQRES 27 A 404 GLY LEU ASP PRO GLU LYS ILE ASN VAL ASN GLY GLY ALA SEQRES 28 A 404 MET ALA ILE GLY HIS PRO LEU GLY ALA THR GLY ALA ARG SEQRES 29 A 404 CYS VAL ALA THR LEU LEU HIS GLU MET LYS ARG ARG GLY SEQRES 30 A 404 LYS ASP CYS ARG PHE GLY VAL VAL SER MET CYS ILE GLY SEQRES 31 A 404 THR GLY MET GLY ALA ALA ALA VAL PHE GLU ARG GLY ASP SEQRES 32 A 404 GLY SEQRES 1 B 404 ASP SER ALA ALA TYR GLN ARG THR SER LEU TYR GLY ASP SEQRES 2 B 404 ASP VAL VAL ILE VAL ALA ALA HIS ARG THR PRO LEU CYS SEQRES 3 B 404 LYS SER LYS ARG GLY ASN PHE LYS ASP THR TYR PRO ASP SEQRES 4 B 404 ASP LEU LEU ALA PRO VAL LEU ARG ALA LEU ILE GLU LYS SEQRES 5 B 404 THR ASN LEU ASN PRO SER GLU VAL GLY ASP ILE VAL VAL SEQRES 6 B 404 GLY THR VAL LEU ALA PRO GLY SER GLN ARG ALA SER GLU SEQRES 7 B 404 CYS ARG MET ALA ALA PHE TYR ALA GLY PHE PRO GLU THR SEQRES 8 B 404 VAL ALA VAL ARG THR VAL ASN ARG GLN CYS SER SER GLY SEQRES 9 B 404 LEU GLN ALA VAL ALA ASP VAL ALA ALA ALA ILE LYS ALA SEQRES 10 B 404 GLY PHE TYR ASP ILE GLY ILE GLY ALA GLY LEU GLU SER SEQRES 11 B 404 MET THR THR ASN PRO MET ALA TRP GLU GLY SER VAL ASN SEQRES 12 B 404 PRO ALA VAL LYS LYS PHE ALA GLN ALA GLN ASN CYS LEU SEQRES 13 B 404 LEU PRO MET GLY VAL THR SER GLU ASN VAL ALA GLN ARG SEQRES 14 B 404 PHE GLY VAL SER ARG GLN GLU GLN ASP GLN ALA ALA VAL SEQRES 15 B 404 ASP SER HIS ARG LYS ALA ALA ALA ALA THR ALA ALA GLY SEQRES 16 B 404 LYS PHE LYS ASP GLU ILE ILE PRO VAL LYS THR LYS LEU SEQRES 17 B 404 VAL ASP PRO LYS THR GLY ASP GLU LYS PRO ILE THR VAL SEQRES 18 B 404 SER VAL ASP ASP GLY ILE ARG PRO THR THR THR LEU ALA SEQRES 19 B 404 SER LEU GLY LYS LEU LYS PRO VAL PHE LYS LYS ASP GLY SEQRES 20 B 404 THR THR THR ALA GLY ASN SER SER GLN VAL SER ASP GLY SEQRES 21 B 404 ALA GLY ALA VAL LEU LEU MET LYS ARG SER VAL ALA MET SEQRES 22 B 404 GLN LYS GLY LEU PRO VAL LEU GLY VAL PHE ARG THR PHE SEQRES 23 B 404 ALA ALA VAL GLY VAL ASP PRO ALA ILE MET GLY ILE GLY SEQRES 24 B 404 PRO ALA VAL ALA ILE PRO ALA ALA VAL LYS ALA ALA GLY SEQRES 25 B 404 LEU GLU LEU ASP ASP ILE ASP LEU PHE GLU ILE ASN GLU SEQRES 26 B 404 ALA PHE ALA SER GLN PHE VAL TYR CYS ARG ASN LYS LEU SEQRES 27 B 404 GLY LEU ASP PRO GLU LYS ILE ASN VAL ASN GLY GLY ALA SEQRES 28 B 404 MET ALA ILE GLY HIS PRO LEU GLY ALA THR GLY ALA ARG SEQRES 29 B 404 CYS VAL ALA THR LEU LEU HIS GLU MET LYS ARG ARG GLY SEQRES 30 B 404 LYS ASP CYS ARG PHE GLY VAL VAL SER MET CYS ILE GLY SEQRES 31 B 404 THR GLY MET GLY ALA ALA ALA VAL PHE GLU ARG GLY ASP SEQRES 32 B 404 GLY FORMUL 3 HOH *511(H2 O) HELIX 1 1 PRO A 75 LYS A 89 1 15 HELIX 2 2 ASN A 93 VAL A 97 5 5 HELIX 3 3 SER A 110 ALA A 123 1 14 HELIX 4 4 GLY A 141 ALA A 154 1 14 HELIX 5 5 LYS A 185 GLY A 208 1 24 HELIX 6 6 SER A 210 ALA A 231 1 22 HELIX 7 7 THR A 269 LYS A 275 1 7 HELIX 8 8 ARG A 306 GLY A 313 1 8 HELIX 9 9 ASP A 329 MET A 333 5 5 HELIX 10 10 ILE A 335 ALA A 348 1 14 HELIX 11 11 GLU A 351 ILE A 355 5 5 HELIX 12 12 PHE A 364 GLY A 376 1 13 HELIX 13 13 ASP A 378 LYS A 381 5 4 HELIX 14 14 GLY A 387 GLY A 392 1 6 HELIX 15 15 PRO A 394 GLY A 396 5 3 HELIX 16 16 ALA A 397 GLY A 414 1 18 HELIX 17 17 PRO B 75 ASN B 91 1 17 HELIX 18 18 ASN B 93 VAL B 97 5 5 HELIX 19 19 SER B 110 ALA B 123 1 14 HELIX 20 20 GLY B 141 ALA B 154 1 14 HELIX 21 21 LYS B 184 PHE B 207 1 24 HELIX 22 22 SER B 210 ALA B 231 1 22 HELIX 23 23 THR B 269 GLY B 274 1 6 HELIX 24 24 ARG B 306 GLY B 313 1 8 HELIX 25 25 ILE B 335 ALA B 348 1 14 HELIX 26 26 GLU B 351 ILE B 355 5 5 HELIX 27 27 PHE B 364 GLY B 376 1 13 HELIX 28 28 ASP B 378 LYS B 381 5 4 HELIX 29 29 GLY B 387 GLY B 392 1 6 HELIX 30 30 PRO B 394 GLY B 396 5 3 HELIX 31 31 ALA B 397 GLY B 414 1 18 SHEET 1 AA 4 TYR A 42 LEU A 47 0 SHEET 2 AA 4 GLY A 318 GLY A 327 -1 O PHE A 323 N SER A 46 SHEET 3 AA 4 VAL A 52 ARG A 59 -1 O VAL A 52 N PHE A 320 SHEET 4 AA 4 SER A 295 LYS A 305 -1 O ALA A 300 N HIS A 58 SHEET 1 AB 5 TYR A 42 LEU A 47 0 SHEET 2 AB 5 GLY A 318 GLY A 327 -1 O PHE A 323 N SER A 46 SHEET 3 AB 5 MET A 430 ARG A 438 -1 O GLY A 431 N VAL A 326 SHEET 4 AB 5 PHE A 419 CYS A 425 -1 O GLY A 420 N PHE A 436 SHEET 5 AB 5 LEU A 357 ILE A 360 1 O LEU A 357 N VAL A 421 SHEET 1 AC 2 VAL A 241 VAL A 246 0 SHEET 2 AC 2 GLU A 253 VAL A 258 -1 O LYS A 254 N LEU A 245 SHEET 1 BA 4 TYR B 42 LEU B 47 0 SHEET 2 BA 4 GLY B 318 GLY B 327 -1 O PHE B 323 N SER B 46 SHEET 3 BA 4 VAL B 52 ARG B 59 -1 O VAL B 52 N PHE B 320 SHEET 4 BA 4 SER B 295 LYS B 305 -1 O ALA B 300 N HIS B 58 SHEET 1 BB 5 TYR B 42 LEU B 47 0 SHEET 2 BB 5 GLY B 318 GLY B 327 -1 O PHE B 323 N SER B 46 SHEET 3 BB 5 MET B 430 ARG B 438 -1 O GLY B 431 N VAL B 326 SHEET 4 BB 5 PHE B 419 CYS B 425 -1 O GLY B 420 N PHE B 436 SHEET 5 BB 5 LEU B 357 ILE B 360 1 O LEU B 357 N VAL B 421 SHEET 1 BC 2 VAL B 241 VAL B 246 0 SHEET 2 BC 2 GLU B 253 VAL B 258 -1 O LYS B 254 N LEU B 245 SSBOND 1 CYS A 138 CYS A 192 1555 1555 2.04 SSBOND 2 CYS B 138 CYS B 192 1555 1555 2.03 CISPEP 1 ASP A 38 SER A 39 0 -6.49 CRYST1 73.154 94.461 111.499 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008969 0.00000 MTRIX1 1 -0.996700 0.009700 0.080140 34.56000 1 MTRIX2 1 -0.006039 -0.998900 0.045800 94.39000 1 MTRIX3 1 0.080500 0.045170 0.995700 -3.66100 1