HEADER TRANSFERASE 01-DEC-05 2C84 TITLE CRYSTAL STRUCTURE OF THE SIALYLTRANSFERASE PM0188 WITH CMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-2,3/2,6-SIALYLTRANSFERASE/SIALIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 25-412; COMPND 5 SYNONYM: ALPHA-2,6-SIALYLTRANSFERASE PM0188; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PASTEURELLA MULTOCIDA; SOURCE 3 ORGANISM_TAXID: 747; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS HYPOTHETICAL PROTEIN, PM0188, SIALYLTRANSFERASE, CMP, TRANSFERASE, KEYWDS 2 GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.U.KIM,H.S.CHO REVDAT 6 06-NOV-24 2C84 1 REMARK REVDAT 5 09-OCT-19 2C84 1 JRNL LINK REVDAT 4 04-APR-18 2C84 1 SOURCE REMARK REVDAT 3 24-FEB-09 2C84 1 VERSN REVDAT 2 11-MAR-08 2C84 1 VERSN JRNL REMARK REVDAT 1 27-MAR-07 2C84 0 JRNL AUTH D.U.KIM,J.H.YOO,Y.J.LEE,K.S.KIM,H.S.CHO JRNL TITL STRUCTURAL ANALYSIS OF SIALYLTRANSFERASE PM0188 FROM JRNL TITL 2 PASTEURELLA MULTOCIDA COMPLEXED WITH DONOR ANALOGUE AND JRNL TITL 3 ACCEPTOR SUGAR. JRNL REF BMB REP V. 41 48 2008 JRNL REFN ISSN 1976-6696 JRNL PMID 18304450 JRNL DOI 10.5483/BMBREP.2008.41.1.048 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.P.CHIU,A.G.WATTS,L.L.LAIRSON,M.GILBERT,D.LIM, REMARK 1 AUTH 2 W.W.WAKARCHUK,S.G.WITHERS,N.C.STRYNADKA REMARK 1 TITL STRUCTURAL ANALYSIS OF THE SIALYLTRANSFERASE CSTII FROM REMARK 1 TITL 2 CAMPYLOBACTER JEJUNI IN COMPLEX WITH A SUBSTRATE ANALOG REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 11 163 2004 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 14730352 REMARK 1 DOI 10.1038/NSMB720 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.U.KIM,J.H.YOO,K.RYU,H.S.CHO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF THE ALPHA-2,6-SIALYLTRANSFERASE PM0188 FROM REMARK 1 TITL 3 PASTEURELLA MULTOSIDA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 142 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511286 REMARK 1 DOI 10.1107/S1744309106000844 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 18691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3204 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4347 ; 1.681 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 4.585 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;42.884 ;25.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;15.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.890 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2444 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1497 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2215 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.296 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 2.402 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3057 ; 2.821 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1454 ; 4.158 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1290 ; 5.354 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3398 ; 3.601 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 178 ; 6.868 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3127 ; 2.718 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2C84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU R-AXIS IV REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.85600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.08150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.85600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.08150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 373 REMARK 465 ASN A 374 REMARK 465 LYS A 375 REMARK 465 GLN A 376 REMARK 465 VAL A 377 REMARK 465 LYS A 378 REMARK 465 SER A 379 REMARK 465 LYS A 380 REMARK 465 GLU A 381 REMARK 465 ASP A 382 REMARK 465 ALA A 383 REMARK 465 LEU A 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 364 O HOH A 2157 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 35 -134.70 -107.89 REMARK 500 SER A 36 -38.87 -137.32 REMARK 500 HIS A 127 52.41 -150.07 REMARK 500 ALA A 219 -112.37 42.19 REMARK 500 TRP A 270 -75.45 -62.26 REMARK 500 GLU A 271 77.11 -4.68 REMARK 500 ASN A 273 -132.50 -112.92 REMARK 500 THR A 274 -44.99 -162.73 REMARK 500 LYS A 326 -92.07 -103.25 REMARK 500 ASN A 327 77.22 -104.89 REMARK 500 PRO A 332 119.44 -38.52 REMARK 500 SER A 401 -122.48 -28.52 REMARK 500 GLN A 402 117.46 -161.69 REMARK 500 TRP A 406 -70.43 -30.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C A1414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C83 RELATED DB: PDB REMARK 900 CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 900 THE ALPHA-2,6- SIALYLTRANSFERASE PM0188 FROM P. MULTOSIDA DBREF 2C84 A 25 412 UNP Q15KI8 Q15KI8_PASMU 25 412 DBREF 2C84 A 413 413 PDB 2C84 2C84 413 413 SEQADV 2C84 GLU A 275 UNP Q15KI8 ASP 275 CONFLICT SEQADV 2C84 GLU A 411 UNP Q15KI8 GLN 411 CONFLICT SEQRES 1 A 389 SER LYS THR ILE THR LEU TYR LEU ASP PRO ALA SER LEU SEQRES 2 A 389 PRO ALA LEU ASN GLN LEU MSE ASP PHE THR GLN ASN ASN SEQRES 3 A 389 GLU ASP LYS THR HIS PRO ARG ILE PHE GLY LEU SER ARG SEQRES 4 A 389 PHE LYS ILE PRO ASP ASN ILE ILE THR GLN TYR GLN ASN SEQRES 5 A 389 ILE HIS PHE VAL GLU LEU LYS ASP ASN ARG PRO THR GLU SEQRES 6 A 389 ALA LEU PHE THR ILE LEU ASP GLN TYR PRO GLY ASN ILE SEQRES 7 A 389 GLU LEU ASN ILE HIS LEU ASN ILE ALA HIS SER VAL GLN SEQRES 8 A 389 LEU ILE ARG PRO ILE LEU ALA TYR ARG PHE LYS HIS LEU SEQRES 9 A 389 ASP ARG VAL SER ILE GLN GLN LEU ASN LEU TYR ASP ASP SEQRES 10 A 389 GLY SER MSE GLU TYR VAL ASP LEU GLU LYS GLU GLU ASN SEQRES 11 A 389 LYS ASP ILE SER ALA GLU ILE LYS GLN ALA GLU LYS GLN SEQRES 12 A 389 LEU SER HIS TYR LEU LEU THR GLY LYS ILE LYS PHE ASP SEQRES 13 A 389 ASN PRO THR ILE ALA ARG TYR VAL TRP GLN SER ALA PHE SEQRES 14 A 389 PRO VAL LYS TYR HIS PHE LEU SER THR ASP TYR PHE GLU SEQRES 15 A 389 LYS ALA GLU PHE LEU GLN PRO LEU LYS GLU TYR LEU ALA SEQRES 16 A 389 GLU ASN TYR GLN LYS MSE ASP TRP THR ALA TYR GLN GLN SEQRES 17 A 389 LEU THR PRO GLU GLN GLN ALA PHE TYR LEU THR LEU VAL SEQRES 18 A 389 GLY PHE ASN ASP GLU VAL LYS GLN SER LEU GLU VAL GLN SEQRES 19 A 389 GLN ALA LYS PHE ILE PHE THR GLY THR THR THR TRP GLU SEQRES 20 A 389 GLY ASN THR GLU VAL ARG GLU TYR TYR ALA GLN GLN GLN SEQRES 21 A 389 LEU ASN LEU LEU ASN HIS PHE THR GLN ALA GLU GLY ASP SEQRES 22 A 389 LEU PHE ILE GLY ASP HIS TYR LYS ILE TYR PHE LYS GLY SEQRES 23 A 389 HIS PRO ARG GLY GLY GLU ILE ASN ASP TYR ILE LEU ASN SEQRES 24 A 389 ASN ALA LYS ASN ILE THR ASN ILE PRO ALA ASN ILE SER SEQRES 25 A 389 PHE GLU VAL LEU MSE MSE THR GLY LEU LEU PRO ASP LYS SEQRES 26 A 389 VAL GLY GLY VAL ALA SER SER LEU TYR PHE SER LEU PRO SEQRES 27 A 389 LYS GLU LYS ILE SER HIS ILE ILE PHE THR SER ASN LYS SEQRES 28 A 389 GLN VAL LYS SER LYS GLU ASP ALA LEU ASN ASN PRO TYR SEQRES 29 A 389 VAL LYS VAL MSE ARG ARG LEU GLY ILE ILE ASP GLU SER SEQRES 30 A 389 GLN VAL ILE PHE TRP ASP SER LEU LYS GLU LEU GLY MODRES 2C84 MSE A 44 MET SELENOMETHIONINE MODRES 2C84 MSE A 144 MET SELENOMETHIONINE MODRES 2C84 MSE A 225 MET SELENOMETHIONINE MODRES 2C84 MSE A 341 MET SELENOMETHIONINE MODRES 2C84 MSE A 342 MET SELENOMETHIONINE MODRES 2C84 MSE A 392 MET SELENOMETHIONINE HET MSE A 44 8 HET MSE A 144 8 HET MSE A 225 8 HET MSE A 341 8 HET MSE A 342 8 HET MSE A 392 8 HET C A1414 21 HETNAM MSE SELENOMETHIONINE HETNAM C CYTIDINE-5'-MONOPHOSPHATE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 C C9 H14 N3 O8 P FORMUL 3 HOH *178(H2 O) HELIX 1 1 SER A 36 ASN A 49 1 14 HELIX 2 2 PRO A 67 THR A 72 1 6 HELIX 3 3 GLU A 89 GLN A 97 1 9 HELIX 4 4 HIS A 112 ILE A 117 1 6 HELIX 5 5 ILE A 117 LYS A 126 1 10 HELIX 6 6 GLY A 142 LYS A 151 1 10 HELIX 7 7 ASP A 156 GLY A 175 1 20 HELIX 8 8 THR A 183 VAL A 188 5 6 HELIX 9 9 VAL A 188 ALA A 192 5 5 HELIX 10 10 SER A 201 ALA A 208 1 8 HELIX 11 11 LEU A 211 ALA A 219 1 9 HELIX 12 12 THR A 228 LEU A 233 5 6 HELIX 13 13 THR A 234 GLY A 246 1 13 HELIX 14 14 ASN A 248 LEU A 255 1 8 HELIX 15 15 THR A 274 GLN A 293 1 20 HELIX 16 16 GLY A 315 ALA A 325 1 11 HELIX 17 17 PHE A 337 THR A 343 1 7 HELIX 18 18 SER A 355 SER A 360 5 6 HELIX 19 19 PRO A 362 GLU A 364 5 3 HELIX 20 20 ASN A 386 LEU A 395 1 10 HELIX 21 21 ASP A 407 LEU A 409 5 3 SHEET 1 AA 7 ILE A 77 PHE A 79 0 SHEET 2 AA 7 ARG A 57 LEU A 61 1 O ARG A 57 N HIS A 78 SHEET 3 AA 7 LYS A 26 ASP A 33 1 O THR A 29 N ILE A 58 SHEET 4 AA 7 ILE A 102 ASN A 109 1 O GLU A 103 N ILE A 28 SHEET 5 AA 7 VAL A 131 TYR A 139 1 O SER A 132 N LEU A 104 SHEET 6 AA 7 VAL A 195 PHE A 199 1 O LYS A 196 N LEU A 138 SHEET 7 AA 7 TYR A 222 LYS A 224 1 O GLN A 223 N PHE A 199 SHEET 1 AB 6 ILE A 328 ILE A 331 0 SHEET 2 AB 6 LYS A 305 LYS A 309 1 O ILE A 306 N THR A 329 SHEET 3 AB 6 LYS A 261 THR A 265 1 O PHE A 262 N TYR A 307 SHEET 4 AB 6 LYS A 349 VAL A 353 1 O LYS A 349 N ILE A 263 SHEET 5 AB 6 ILE A 366 PHE A 371 1 N SER A 367 O VAL A 350 SHEET 6 AB 6 ILE A 404 PHE A 405 1 O ILE A 404 N PHE A 371 LINK C LEU A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N ASP A 45 1555 1555 1.34 LINK C SER A 143 N MSE A 144 1555 1555 1.34 LINK C MSE A 144 N GLU A 145 1555 1555 1.34 LINK C LYS A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N ASP A 226 1555 1555 1.34 LINK C LEU A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N MSE A 342 1555 1555 1.34 LINK C MSE A 342 N THR A 343 1555 1555 1.31 LINK C VAL A 391 N MSE A 392 1555 1555 1.33 LINK C MSE A 392 N ARG A 393 1555 1555 1.32 SITE 1 AC1 15 LEU A 37 GLY A 266 LYS A 309 GLY A 310 SITE 2 AC1 15 HIS A 311 PRO A 312 ILE A 335 SER A 336 SITE 3 AC1 15 PHE A 337 GLU A 338 SER A 355 SER A 356 SITE 4 AC1 15 HOH A2112 HOH A2163 HOH A2178 CRYST1 65.712 66.163 101.940 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009810 0.00000