data_2C9A # _entry.id 2C9A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2C9A PDBE EBI-26766 WWPDB D_1290026766 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1RPM _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU, DOMAIN 1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2C9A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-12-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Aricescu, A.R.' 1 ? 'Hon, W.C.' 2 ? 'Siebold, C.' 3 ? 'Lu, W.' 4 ? 'Van Der Merwe, P.A.' 5 ? 'Jones, E.Y.' 6 ? # _citation.id primary _citation.title 'Molecular Analysis of Receptor Protein Tyrosine Phosphatase Mu-Mediated Cell Adhesion.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 25 _citation.page_first 701 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16456543 _citation.pdbx_database_id_DOI 10.1038/SJ.EMBOJ.7600974 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aricescu, A.R.' 1 ? primary 'Hon, W.C.' 2 ? primary 'Siebold, C.' 3 ? primary 'Lu, W.' 4 ? primary 'Van Der Merwe, P.A.' 5 ? primary 'Jones, E.Y.' 6 ? # _cell.entry_id 2C9A _cell.length_a 58.856 _cell.length_b 97.737 _cell.length_c 134.357 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C9A _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU' 29057.180 1 3.1.3.48 ? 'MAM-IG MODULE RESIDUES 21-279' ? 2 branched man ;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 748.682 1 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU, R-PTP-MU' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ETFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPW(MSE)PSGSF(MSE)LVNASGRPEGQRAHLLLPQLKEN DTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI DEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK RDAGKYRC(MSE)IRTEGGVGISNYAELVVK ; _entity_poly.pdbx_seq_one_letter_code_can ;ETFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFH YFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC MIRTEGGVGISNYAELVVK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 PHE n 1 4 SER n 1 5 GLY n 1 6 GLY n 1 7 CYS n 1 8 LEU n 1 9 PHE n 1 10 ASP n 1 11 GLU n 1 12 PRO n 1 13 TYR n 1 14 SER n 1 15 THR n 1 16 CYS n 1 17 GLY n 1 18 TYR n 1 19 SER n 1 20 GLN n 1 21 SER n 1 22 GLU n 1 23 GLY n 1 24 ASP n 1 25 ASP n 1 26 PHE n 1 27 ASN n 1 28 TRP n 1 29 GLU n 1 30 GLN n 1 31 VAL n 1 32 ASN n 1 33 THR n 1 34 LEU n 1 35 THR n 1 36 LYS n 1 37 PRO n 1 38 THR n 1 39 SER n 1 40 ASP n 1 41 PRO n 1 42 TRP n 1 43 MSE n 1 44 PRO n 1 45 SER n 1 46 GLY n 1 47 SER n 1 48 PHE n 1 49 MSE n 1 50 LEU n 1 51 VAL n 1 52 ASN n 1 53 ALA n 1 54 SER n 1 55 GLY n 1 56 ARG n 1 57 PRO n 1 58 GLU n 1 59 GLY n 1 60 GLN n 1 61 ARG n 1 62 ALA n 1 63 HIS n 1 64 LEU n 1 65 LEU n 1 66 LEU n 1 67 PRO n 1 68 GLN n 1 69 LEU n 1 70 LYS n 1 71 GLU n 1 72 ASN n 1 73 ASP n 1 74 THR n 1 75 HIS n 1 76 CYS n 1 77 ILE n 1 78 ASP n 1 79 PHE n 1 80 HIS n 1 81 TYR n 1 82 PHE n 1 83 VAL n 1 84 SER n 1 85 SER n 1 86 LYS n 1 87 SER n 1 88 ASN n 1 89 SER n 1 90 PRO n 1 91 PRO n 1 92 GLY n 1 93 LEU n 1 94 LEU n 1 95 ASN n 1 96 VAL n 1 97 TYR n 1 98 VAL n 1 99 LYS n 1 100 VAL n 1 101 ASN n 1 102 ASN n 1 103 GLY n 1 104 PRO n 1 105 LEU n 1 106 GLY n 1 107 ASN n 1 108 PRO n 1 109 ILE n 1 110 TRP n 1 111 ASN n 1 112 ILE n 1 113 SER n 1 114 GLY n 1 115 ASP n 1 116 PRO n 1 117 THR n 1 118 ARG n 1 119 THR n 1 120 TRP n 1 121 ASN n 1 122 ARG n 1 123 ALA n 1 124 GLU n 1 125 LEU n 1 126 ALA n 1 127 ILE n 1 128 SER n 1 129 THR n 1 130 PHE n 1 131 TRP n 1 132 PRO n 1 133 ASN n 1 134 PHE n 1 135 TYR n 1 136 GLN n 1 137 VAL n 1 138 ILE n 1 139 PHE n 1 140 GLU n 1 141 VAL n 1 142 ILE n 1 143 THR n 1 144 SER n 1 145 GLY n 1 146 HIS n 1 147 GLN n 1 148 GLY n 1 149 TYR n 1 150 LEU n 1 151 ALA n 1 152 ILE n 1 153 ASP n 1 154 GLU n 1 155 VAL n 1 156 LYS n 1 157 VAL n 1 158 LEU n 1 159 GLY n 1 160 HIS n 1 161 PRO n 1 162 CYS n 1 163 THR n 1 164 ARG n 1 165 THR n 1 166 PRO n 1 167 HIS n 1 168 PHE n 1 169 LEU n 1 170 ARG n 1 171 ILE n 1 172 GLN n 1 173 ASN n 1 174 VAL n 1 175 GLU n 1 176 VAL n 1 177 ASN n 1 178 ALA n 1 179 GLY n 1 180 GLN n 1 181 PHE n 1 182 ALA n 1 183 THR n 1 184 PHE n 1 185 GLN n 1 186 CYS n 1 187 SER n 1 188 ALA n 1 189 ILE n 1 190 GLY n 1 191 ARG n 1 192 THR n 1 193 VAL n 1 194 ALA n 1 195 GLY n 1 196 ASP n 1 197 ARG n 1 198 LEU n 1 199 TRP n 1 200 LEU n 1 201 GLN n 1 202 GLY n 1 203 ILE n 1 204 ASP n 1 205 VAL n 1 206 ARG n 1 207 ASP n 1 208 ALA n 1 209 PRO n 1 210 LEU n 1 211 LYS n 1 212 GLU n 1 213 ILE n 1 214 LYS n 1 215 VAL n 1 216 THR n 1 217 SER n 1 218 SER n 1 219 ARG n 1 220 ARG n 1 221 PHE n 1 222 ILE n 1 223 ALA n 1 224 SER n 1 225 PHE n 1 226 ASN n 1 227 VAL n 1 228 VAL n 1 229 ASN n 1 230 THR n 1 231 THR n 1 232 LYS n 1 233 ARG n 1 234 ASP n 1 235 ALA n 1 236 GLY n 1 237 LYS n 1 238 TYR n 1 239 ARG n 1 240 CYS n 1 241 MSE n 1 242 ILE n 1 243 ARG n 1 244 THR n 1 245 GLU n 1 246 GLY n 1 247 GLY n 1 248 VAL n 1 249 GLY n 1 250 ILE n 1 251 SER n 1 252 ASN n 1 253 TYR n 1 254 ALA n 1 255 GLU n 1 256 LEU n 1 257 VAL n 1 258 VAL n 1 259 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK-293T _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTPRM_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P28827 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2C9A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 259 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P28827 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 279 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 279 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2C9A _struct_ref_seq_dif.mon_id PHE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 48 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P28827 _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 68 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 68 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2C9A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_percent_sol 60.34 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M TRI-SODIUM CITRATE, PH 6.2 0.1 M AMMONIUM CHLORIDE 30% (W/V) PEG 4000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2002-11-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2C9A _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.70 _reflns.number_obs 10567 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.53 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.10 _reflns_shell.pdbx_redundancy 10.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2C9A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 10473 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.225 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.275 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 534 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 47.97 _refine.aniso_B[1][1] -5.22000 _refine.aniso_B[2][2] 9.21000 _refine.aniso_B[3][3] -4.00000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.675 _refine.pdbx_overall_ESU_R_Free 0.347 _refine.overall_SU_ML 0.260 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 25.656 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2037 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 104 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 2208 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 2204 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.594 1.990 ? 3011 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.240 5.000 ? 258 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.920 23.800 ? 100 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.598 15.000 ? 328 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.982 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 344 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1648 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.238 0.200 ? 966 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.321 0.200 ? 1477 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.166 0.200 ? 105 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.234 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.102 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.504 1.500 ? 1287 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.967 2.000 ? 2087 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.623 3.000 ? 952 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.858 4.500 ? 924 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2C9A _struct.title 'Crystal structure of the MAM-Ig module of receptor protein tyrosine phosphatase mu' _struct.pdbx_descriptor 'RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU (E.C.3.1.3.48)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2C9A _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'GLYCOPROTEIN, HYDROLASE, IMMUNOGLOBULIN DOMAIN, RECEPTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? GLY A 17 ? PRO A 32 GLY A 37 5 ? 6 HELX_P HELX_P2 2 THR A 231 ? ALA A 235 ? THR A 251 ALA A 255 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 27 A CYS 36 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf2 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 162 SG ? ? A CYS 96 A CYS 182 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? A CYS 186 SG ? ? ? 1_555 A CYS 240 SG ? ? A CYS 206 A CYS 260 1_555 ? ? ? ? ? ? ? 2.022 ? ? covale1 covale both ? A TRP 42 C ? ? ? 1_555 A MSE 43 N ? ? A TRP 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 43 C ? ? ? 1_555 A PRO 44 N ? ? A MSE 63 A PRO 64 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale3 covale both ? A PHE 48 C ? ? ? 1_555 A MSE 49 N ? ? A PHE 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 49 C ? ? ? 1_555 A LEU 50 N ? ? A MSE 69 A LEU 70 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale5 covale one ? A ASN 52 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 72 B NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale6 covale one ? A ASN 72 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 92 C NAG 1 1_555 ? ? ? ? ? ? ? 1.462 ? N-Glycosylation covale7 covale one ? A ASN 111 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 131 A NAG 1287 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale8 covale both ? A CYS 240 C ? ? ? 1_555 A MSE 241 N ? ? A CYS 260 A MSE 261 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? A MSE 241 C ? ? ? 1_555 A ILE 242 N ? ? A MSE 261 A ILE 262 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale11 covale both ? B NAG . O4 ? ? ? 1_555 B MAN . C1 ? ? B NAG 2 B MAN 3 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale12 covale one ? B MAN . O3 ? ? ? 1_555 B MAN . C1 ? ? B MAN 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.476 ? ? covale13 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.471 ? ? covale14 covale one ? C NAG . O6 ? ? ? 1_555 C FUC . C1 ? ? C NAG 1 C FUC 3 1_555 ? ? ? ? ? ? ? 1.446 ? ? metalc1 metalc ? ? A LEU 8 O ? ? ? 1_555 F NA . NA ? ? A LEU 28 A NA 1289 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc2 metalc ? ? A PHE 26 O ? ? ? 1_555 E NA . NA ? ? A PHE 46 A NA 1288 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc3 metalc ? ? A ASN 27 OD1 ? ? ? 1_555 E NA . NA ? ? A ASN 47 A NA 1288 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc4 metalc ? ? A SER 47 OG ? ? ? 1_555 F NA . NA ? ? A SER 67 A NA 1289 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc5 metalc ? ? A ASP 153 O ? ? ? 1_555 F NA . NA ? ? A ASP 173 A NA 1289 1_555 ? ? ? ? ? ? ? 2.342 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 131 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 151 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 132 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 152 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 7 ? AC ? 8 ? AD ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AB 5 6 ? parallel AB 6 7 ? parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? anti-parallel AC 5 6 ? parallel AC 6 7 ? anti-parallel AC 7 8 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 SER A 19 ? GLN A 20 ? SER A 39 GLN A 40 AA 2 ARG A 61 ? LEU A 65 ? ARG A 81 LEU A 85 AA 3 TYR A 135 ? THR A 143 ? TYR A 155 THR A 163 AA 4 GLY A 92 ? VAL A 100 ? GLY A 112 VAL A 120 AA 5 TRP A 110 ? ILE A 112 ? TRP A 130 ILE A 132 AB 1 GLU A 29 ? ASN A 32 ? GLU A 49 ASN A 52 AB 2 SER A 47 ? ASN A 52 ? SER A 67 ASN A 72 AB 3 TYR A 149 ? LEU A 158 ? TYR A 169 LEU A 178 AB 4 CYS A 76 ? SER A 84 ? CYS A 96 SER A 104 AB 5 TRP A 120 ? ILE A 127 ? TRP A 140 ILE A 147 AB 6 GLY A 247 ? VAL A 258 ? GLY A 267 VAL A 278 AB 7 VAL A 174 ? VAL A 176 ? VAL A 194 VAL A 196 AC 1 GLU A 29 ? ASN A 32 ? GLU A 49 ASN A 52 AC 2 SER A 47 ? ASN A 52 ? SER A 67 ASN A 72 AC 3 TYR A 149 ? LEU A 158 ? TYR A 169 LEU A 178 AC 4 CYS A 76 ? SER A 84 ? CYS A 96 SER A 104 AC 5 TRP A 120 ? ILE A 127 ? TRP A 140 ILE A 147 AC 6 GLY A 247 ? VAL A 258 ? GLY A 267 VAL A 278 AC 7 LYS A 237 ? THR A 244 ? LYS A 257 THR A 264 AC 8 ARG A 197 ? GLY A 202 ? ARG A 217 GLY A 222 AD 1 HIS A 167 ? PHE A 168 ? HIS A 187 PHE A 188 AD 2 ALA A 182 ? ILE A 189 ? ALA A 202 ILE A 209 AD 3 ARG A 220 ? VAL A 227 ? ARG A 240 VAL A 247 AD 4 LEU A 210 ? SER A 217 ? LEU A 230 SER A 237 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 19 ? N SER A 39 O LEU A 65 ? O LEU A 85 AA 2 3 N LEU A 64 ? N LEU A 84 O PHE A 139 ? O PHE A 159 AA 3 4 N ILE A 142 ? N ILE A 162 O LEU A 93 ? O LEU A 113 AA 4 5 N VAL A 96 ? N VAL A 116 O TRP A 110 ? O TRP A 130 AB 1 2 N VAL A 31 ? N VAL A 51 O PHE A 48 ? O PHE A 68 AB 2 3 N VAL A 51 ? N VAL A 71 O LEU A 150 ? O LEU A 170 AB 3 4 N LEU A 158 ? N LEU A 178 O CYS A 76 ? O CYS A 96 AB 4 5 N TYR A 81 ? N TYR A 101 O ASN A 121 ? O ASN A 141 AB 5 6 N ALA A 126 ? N ALA A 146 O VAL A 248 ? O VAL A 268 AB 6 7 N VAL A 257 ? N VAL A 277 O VAL A 174 ? O VAL A 194 AC 1 2 N VAL A 31 ? N VAL A 51 O PHE A 48 ? O PHE A 68 AC 2 3 N VAL A 51 ? N VAL A 71 O LEU A 150 ? O LEU A 170 AC 3 4 N LEU A 158 ? N LEU A 178 O CYS A 76 ? O CYS A 96 AC 4 5 N TYR A 81 ? N TYR A 101 O ASN A 121 ? O ASN A 141 AC 5 6 N ALA A 126 ? N ALA A 146 O VAL A 248 ? O VAL A 268 AC 6 7 N ALA A 254 ? N ALA A 274 O TYR A 238 ? O TYR A 258 AC 7 8 N ARG A 243 ? N ARG A 263 O ARG A 197 ? O ARG A 217 AD 1 2 N HIS A 167 ? N HIS A 187 O ILE A 189 ? O ILE A 209 AD 2 3 N ALA A 188 ? N ALA A 208 O PHE A 221 ? O PHE A 241 AD 3 4 O SER A 224 ? O SER A 244 N LYS A 211 ? N LYS A 231 # _database_PDB_matrix.entry_id 2C9A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2C9A _atom_sites.fract_transf_matrix[1][1] 0.016991 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010232 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007443 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S SE # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG C 2 HAS WRONG CHIRALITY AT ATOM C1' 2 'FUC C 3 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 21 21 GLU GLU A . n A 1 2 THR 2 22 22 THR THR A . n A 1 3 PHE 3 23 23 PHE PHE A . n A 1 4 SER 4 24 24 SER SER A . n A 1 5 GLY 5 25 25 GLY GLY A . n A 1 6 GLY 6 26 26 GLY GLY A . n A 1 7 CYS 7 27 27 CYS CYS A . n A 1 8 LEU 8 28 28 LEU LEU A . n A 1 9 PHE 9 29 29 PHE PHE A . n A 1 10 ASP 10 30 30 ASP ASP A . n A 1 11 GLU 11 31 31 GLU GLU A . n A 1 12 PRO 12 32 32 PRO PRO A . n A 1 13 TYR 13 33 33 TYR TYR A . n A 1 14 SER 14 34 34 SER SER A . n A 1 15 THR 15 35 35 THR THR A . n A 1 16 CYS 16 36 36 CYS CYS A . n A 1 17 GLY 17 37 37 GLY GLY A . n A 1 18 TYR 18 38 38 TYR TYR A . n A 1 19 SER 19 39 39 SER SER A . n A 1 20 GLN 20 40 40 GLN GLN A . n A 1 21 SER 21 41 41 SER SER A . n A 1 22 GLU 22 42 42 GLU GLU A . n A 1 23 GLY 23 43 43 GLY GLY A . n A 1 24 ASP 24 44 44 ASP ASP A . n A 1 25 ASP 25 45 45 ASP ASP A . n A 1 26 PHE 26 46 46 PHE PHE A . n A 1 27 ASN 27 47 47 ASN ASN A . n A 1 28 TRP 28 48 48 TRP TRP A . n A 1 29 GLU 29 49 49 GLU GLU A . n A 1 30 GLN 30 50 50 GLN GLN A . n A 1 31 VAL 31 51 51 VAL VAL A . n A 1 32 ASN 32 52 52 ASN ASN A . n A 1 33 THR 33 53 53 THR THR A . n A 1 34 LEU 34 54 54 LEU LEU A . n A 1 35 THR 35 55 55 THR THR A . n A 1 36 LYS 36 56 56 LYS LYS A . n A 1 37 PRO 37 57 57 PRO PRO A . n A 1 38 THR 38 58 58 THR THR A . n A 1 39 SER 39 59 59 SER SER A . n A 1 40 ASP 40 60 60 ASP ASP A . n A 1 41 PRO 41 61 61 PRO PRO A . n A 1 42 TRP 42 62 62 TRP TRP A . n A 1 43 MSE 43 63 63 MSE MSE A . n A 1 44 PRO 44 64 64 PRO PRO A . n A 1 45 SER 45 65 65 SER SER A . n A 1 46 GLY 46 66 66 GLY GLY A . n A 1 47 SER 47 67 67 SER SER A . n A 1 48 PHE 48 68 68 PHE PHE A . n A 1 49 MSE 49 69 69 MSE MSE A . n A 1 50 LEU 50 70 70 LEU LEU A . n A 1 51 VAL 51 71 71 VAL VAL A . n A 1 52 ASN 52 72 72 ASN ASN A . n A 1 53 ALA 53 73 73 ALA ALA A . n A 1 54 SER 54 74 74 SER SER A . n A 1 55 GLY 55 75 75 GLY GLY A . n A 1 56 ARG 56 76 76 ARG ARG A . n A 1 57 PRO 57 77 77 PRO PRO A . n A 1 58 GLU 58 78 78 GLU GLU A . n A 1 59 GLY 59 79 79 GLY GLY A . n A 1 60 GLN 60 80 80 GLN GLN A . n A 1 61 ARG 61 81 81 ARG ARG A . n A 1 62 ALA 62 82 82 ALA ALA A . n A 1 63 HIS 63 83 83 HIS HIS A . n A 1 64 LEU 64 84 84 LEU LEU A . n A 1 65 LEU 65 85 85 LEU LEU A . n A 1 66 LEU 66 86 86 LEU LEU A . n A 1 67 PRO 67 87 87 PRO PRO A . n A 1 68 GLN 68 88 88 GLN GLN A . n A 1 69 LEU 69 89 89 LEU LEU A . n A 1 70 LYS 70 90 90 LYS LYS A . n A 1 71 GLU 71 91 91 GLU GLU A . n A 1 72 ASN 72 92 92 ASN ASN A . n A 1 73 ASP 73 93 93 ASP ASP A . n A 1 74 THR 74 94 94 THR THR A . n A 1 75 HIS 75 95 95 HIS HIS A . n A 1 76 CYS 76 96 96 CYS CYS A . n A 1 77 ILE 77 97 97 ILE ILE A . n A 1 78 ASP 78 98 98 ASP ASP A . n A 1 79 PHE 79 99 99 PHE PHE A . n A 1 80 HIS 80 100 100 HIS HIS A . n A 1 81 TYR 81 101 101 TYR TYR A . n A 1 82 PHE 82 102 102 PHE PHE A . n A 1 83 VAL 83 103 103 VAL VAL A . n A 1 84 SER 84 104 104 SER SER A . n A 1 85 SER 85 105 105 SER SER A . n A 1 86 LYS 86 106 106 LYS LYS A . n A 1 87 SER 87 107 107 SER SER A . n A 1 88 ASN 88 108 108 ASN ASN A . n A 1 89 SER 89 109 109 SER SER A . n A 1 90 PRO 90 110 110 PRO PRO A . n A 1 91 PRO 91 111 111 PRO PRO A . n A 1 92 GLY 92 112 112 GLY GLY A . n A 1 93 LEU 93 113 113 LEU LEU A . n A 1 94 LEU 94 114 114 LEU LEU A . n A 1 95 ASN 95 115 115 ASN ASN A . n A 1 96 VAL 96 116 116 VAL VAL A . n A 1 97 TYR 97 117 117 TYR TYR A . n A 1 98 VAL 98 118 118 VAL VAL A . n A 1 99 LYS 99 119 119 LYS LYS A . n A 1 100 VAL 100 120 120 VAL VAL A . n A 1 101 ASN 101 121 121 ASN ASN A . n A 1 102 ASN 102 122 122 ASN ASN A . n A 1 103 GLY 103 123 123 GLY GLY A . n A 1 104 PRO 104 124 124 PRO PRO A . n A 1 105 LEU 105 125 125 LEU LEU A . n A 1 106 GLY 106 126 126 GLY GLY A . n A 1 107 ASN 107 127 127 ASN ASN A . n A 1 108 PRO 108 128 128 PRO PRO A . n A 1 109 ILE 109 129 129 ILE ILE A . n A 1 110 TRP 110 130 130 TRP TRP A . n A 1 111 ASN 111 131 131 ASN ASN A . n A 1 112 ILE 112 132 132 ILE ILE A . n A 1 113 SER 113 133 133 SER SER A . n A 1 114 GLY 114 134 134 GLY GLY A . n A 1 115 ASP 115 135 135 ASP ASP A . n A 1 116 PRO 116 136 136 PRO PRO A . n A 1 117 THR 117 137 137 THR THR A . n A 1 118 ARG 118 138 138 ARG ARG A . n A 1 119 THR 119 139 139 THR THR A . n A 1 120 TRP 120 140 140 TRP TRP A . n A 1 121 ASN 121 141 141 ASN ASN A . n A 1 122 ARG 122 142 142 ARG ARG A . n A 1 123 ALA 123 143 143 ALA ALA A . n A 1 124 GLU 124 144 144 GLU GLU A . n A 1 125 LEU 125 145 145 LEU LEU A . n A 1 126 ALA 126 146 146 ALA ALA A . n A 1 127 ILE 127 147 147 ILE ILE A . n A 1 128 SER 128 148 148 SER SER A . n A 1 129 THR 129 149 149 THR THR A . n A 1 130 PHE 130 150 150 PHE PHE A . n A 1 131 TRP 131 151 151 TRP TRP A . n A 1 132 PRO 132 152 152 PRO PRO A . n A 1 133 ASN 133 153 153 ASN ASN A . n A 1 134 PHE 134 154 154 PHE PHE A . n A 1 135 TYR 135 155 155 TYR TYR A . n A 1 136 GLN 136 156 156 GLN GLN A . n A 1 137 VAL 137 157 157 VAL VAL A . n A 1 138 ILE 138 158 158 ILE ILE A . n A 1 139 PHE 139 159 159 PHE PHE A . n A 1 140 GLU 140 160 160 GLU GLU A . n A 1 141 VAL 141 161 161 VAL VAL A . n A 1 142 ILE 142 162 162 ILE ILE A . n A 1 143 THR 143 163 163 THR THR A . n A 1 144 SER 144 164 164 SER SER A . n A 1 145 GLY 145 165 165 GLY GLY A . n A 1 146 HIS 146 166 166 HIS HIS A . n A 1 147 GLN 147 167 167 GLN GLN A . n A 1 148 GLY 148 168 168 GLY GLY A . n A 1 149 TYR 149 169 169 TYR TYR A . n A 1 150 LEU 150 170 170 LEU LEU A . n A 1 151 ALA 151 171 171 ALA ALA A . n A 1 152 ILE 152 172 172 ILE ILE A . n A 1 153 ASP 153 173 173 ASP ASP A . n A 1 154 GLU 154 174 174 GLU GLU A . n A 1 155 VAL 155 175 175 VAL VAL A . n A 1 156 LYS 156 176 176 LYS LYS A . n A 1 157 VAL 157 177 177 VAL VAL A . n A 1 158 LEU 158 178 178 LEU LEU A . n A 1 159 GLY 159 179 179 GLY GLY A . n A 1 160 HIS 160 180 180 HIS HIS A . n A 1 161 PRO 161 181 181 PRO PRO A . n A 1 162 CYS 162 182 182 CYS CYS A . n A 1 163 THR 163 183 183 THR THR A . n A 1 164 ARG 164 184 184 ARG ARG A . n A 1 165 THR 165 185 185 THR THR A . n A 1 166 PRO 166 186 186 PRO PRO A . n A 1 167 HIS 167 187 187 HIS HIS A . n A 1 168 PHE 168 188 188 PHE PHE A . n A 1 169 LEU 169 189 189 LEU LEU A . n A 1 170 ARG 170 190 190 ARG ARG A . n A 1 171 ILE 171 191 191 ILE ILE A . n A 1 172 GLN 172 192 192 GLN GLN A . n A 1 173 ASN 173 193 193 ASN ASN A . n A 1 174 VAL 174 194 194 VAL VAL A . n A 1 175 GLU 175 195 195 GLU GLU A . n A 1 176 VAL 176 196 196 VAL VAL A . n A 1 177 ASN 177 197 197 ASN ASN A . n A 1 178 ALA 178 198 198 ALA ALA A . n A 1 179 GLY 179 199 199 GLY GLY A . n A 1 180 GLN 180 200 200 GLN GLN A . n A 1 181 PHE 181 201 201 PHE PHE A . n A 1 182 ALA 182 202 202 ALA ALA A . n A 1 183 THR 183 203 203 THR THR A . n A 1 184 PHE 184 204 204 PHE PHE A . n A 1 185 GLN 185 205 205 GLN GLN A . n A 1 186 CYS 186 206 206 CYS CYS A . n A 1 187 SER 187 207 207 SER SER A . n A 1 188 ALA 188 208 208 ALA ALA A . n A 1 189 ILE 189 209 209 ILE ILE A . n A 1 190 GLY 190 210 210 GLY GLY A . n A 1 191 ARG 191 211 211 ARG ARG A . n A 1 192 THR 192 212 212 THR THR A . n A 1 193 VAL 193 213 213 VAL VAL A . n A 1 194 ALA 194 214 214 ALA ALA A . n A 1 195 GLY 195 215 215 GLY GLY A . n A 1 196 ASP 196 216 216 ASP ASP A . n A 1 197 ARG 197 217 217 ARG ARG A . n A 1 198 LEU 198 218 218 LEU LEU A . n A 1 199 TRP 199 219 219 TRP TRP A . n A 1 200 LEU 200 220 220 LEU LEU A . n A 1 201 GLN 201 221 221 GLN GLN A . n A 1 202 GLY 202 222 222 GLY GLY A . n A 1 203 ILE 203 223 223 ILE ILE A . n A 1 204 ASP 204 224 224 ASP ASP A . n A 1 205 VAL 205 225 225 VAL VAL A . n A 1 206 ARG 206 226 226 ARG ARG A . n A 1 207 ASP 207 227 227 ASP ASP A . n A 1 208 ALA 208 228 228 ALA ALA A . n A 1 209 PRO 209 229 229 PRO PRO A . n A 1 210 LEU 210 230 230 LEU LEU A . n A 1 211 LYS 211 231 231 LYS LYS A . n A 1 212 GLU 212 232 232 GLU GLU A . n A 1 213 ILE 213 233 233 ILE ILE A . n A 1 214 LYS 214 234 234 LYS LYS A . n A 1 215 VAL 215 235 235 VAL VAL A . n A 1 216 THR 216 236 236 THR THR A . n A 1 217 SER 217 237 237 SER SER A . n A 1 218 SER 218 238 238 SER SER A . n A 1 219 ARG 219 239 239 ARG ARG A . n A 1 220 ARG 220 240 240 ARG ARG A . n A 1 221 PHE 221 241 241 PHE PHE A . n A 1 222 ILE 222 242 242 ILE ILE A . n A 1 223 ALA 223 243 243 ALA ALA A . n A 1 224 SER 224 244 244 SER SER A . n A 1 225 PHE 225 245 245 PHE PHE A . n A 1 226 ASN 226 246 246 ASN ASN A . n A 1 227 VAL 227 247 247 VAL VAL A . n A 1 228 VAL 228 248 248 VAL VAL A . n A 1 229 ASN 229 249 249 ASN ASN A . n A 1 230 THR 230 250 250 THR THR A . n A 1 231 THR 231 251 251 THR THR A . n A 1 232 LYS 232 252 252 LYS LYS A . n A 1 233 ARG 233 253 253 ARG ARG A . n A 1 234 ASP 234 254 254 ASP ASP A . n A 1 235 ALA 235 255 255 ALA ALA A . n A 1 236 GLY 236 256 256 GLY GLY A . n A 1 237 LYS 237 257 257 LYS LYS A . n A 1 238 TYR 238 258 258 TYR TYR A . n A 1 239 ARG 239 259 259 ARG ARG A . n A 1 240 CYS 240 260 260 CYS CYS A . n A 1 241 MSE 241 261 261 MSE MSE A . n A 1 242 ILE 242 262 262 ILE ILE A . n A 1 243 ARG 243 263 263 ARG ARG A . n A 1 244 THR 244 264 264 THR THR A . n A 1 245 GLU 245 265 265 GLU GLU A . n A 1 246 GLY 246 266 266 GLY GLY A . n A 1 247 GLY 247 267 267 GLY GLY A . n A 1 248 VAL 248 268 268 VAL VAL A . n A 1 249 GLY 249 269 269 GLY GLY A . n A 1 250 ILE 250 270 270 ILE ILE A . n A 1 251 SER 251 271 271 SER SER A . n A 1 252 ASN 252 272 272 ASN ASN A . n A 1 253 TYR 253 273 273 TYR TYR A . n A 1 254 ALA 254 274 274 ALA ALA A . n A 1 255 GLU 255 275 275 GLU GLU A . n A 1 256 LEU 256 276 276 LEU LEU A . n A 1 257 VAL 257 277 277 VAL VAL A . n A 1 258 VAL 258 278 278 VAL VAL A . n A 1 259 LYS 259 279 279 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 1287 1287 NAG NAG A . E 5 NA 1 1288 1288 NA NA A . F 5 NA 1 1289 1289 NA NA A . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . G 6 HOH 31 2031 2031 HOH HOH A . G 6 HOH 32 2032 2032 HOH HOH A . G 6 HOH 33 2033 2033 HOH HOH A . G 6 HOH 34 2034 2034 HOH HOH A . G 6 HOH 35 2035 2035 HOH HOH A . G 6 HOH 36 2036 2036 HOH HOH A . G 6 HOH 37 2037 2037 HOH HOH A . G 6 HOH 38 2038 2038 HOH HOH A . G 6 HOH 39 2039 2039 HOH HOH A . G 6 HOH 40 2040 2040 HOH HOH A . G 6 HOH 41 2041 2041 HOH HOH A . G 6 HOH 42 2042 2042 HOH HOH A . G 6 HOH 43 2043 2043 HOH HOH A . G 6 HOH 44 2044 2044 HOH HOH A . G 6 HOH 45 2045 2045 HOH HOH A . G 6 HOH 46 2046 2046 HOH HOH A . G 6 HOH 47 2047 2047 HOH HOH A . G 6 HOH 48 2048 2048 HOH HOH A . G 6 HOH 49 2049 2049 HOH HOH A . G 6 HOH 50 2050 2050 HOH HOH A . G 6 HOH 51 2051 2051 HOH HOH A . G 6 HOH 52 2052 2052 HOH HOH A . G 6 HOH 53 2053 2053 HOH HOH A . G 6 HOH 54 2054 2054 HOH HOH A . G 6 HOH 55 2055 2055 HOH HOH A . G 6 HOH 56 2056 2056 HOH HOH A . G 6 HOH 57 2057 2057 HOH HOH A . G 6 HOH 58 2058 2058 HOH HOH A . G 6 HOH 59 2059 2059 HOH HOH A . G 6 HOH 60 2060 2060 HOH HOH A . G 6 HOH 61 2061 2061 HOH HOH A . G 6 HOH 62 2062 2062 HOH HOH A . G 6 HOH 63 2063 2063 HOH HOH A . G 6 HOH 64 2064 2064 HOH HOH A . G 6 HOH 65 2065 2065 HOH HOH A . G 6 HOH 66 2066 2066 HOH HOH A . G 6 HOH 67 2067 2067 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 52 A ASN 72 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 72 A ASN 92 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 111 A ASN 131 ? ASN 'GLYCOSYLATION SITE' 4 A MSE 43 A MSE 63 ? MET SELENOMETHIONINE 5 A MSE 49 A MSE 69 ? MET SELENOMETHIONINE 6 A MSE 241 A MSE 261 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LEU 8 ? A LEU 28 ? 1_555 NA ? F NA . ? A NA 1289 ? 1_555 OG ? A SER 47 ? A SER 67 ? 1_555 78.4 ? 2 O ? A LEU 8 ? A LEU 28 ? 1_555 NA ? F NA . ? A NA 1289 ? 1_555 O ? A ASP 153 ? A ASP 173 ? 1_555 100.2 ? 3 OG ? A SER 47 ? A SER 67 ? 1_555 NA ? F NA . ? A NA 1289 ? 1_555 O ? A ASP 153 ? A ASP 173 ? 1_555 151.7 ? 4 O ? A PHE 26 ? A PHE 46 ? 1_555 NA ? E NA . ? A NA 1288 ? 1_555 OD1 ? A ASN 27 ? A ASN 47 ? 1_555 61.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2019-09-11 4 'Structure model' 3 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Atomic model' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Experimental preparation' 8 3 'Structure model' 'Non-polymer description' 9 3 'Structure model' 'Structure summary' 10 4 'Structure model' Advisory 11 4 'Structure model' 'Atomic model' 12 4 'Structure model' 'Data collection' 13 4 'Structure model' 'Derived calculations' 14 4 'Structure model' Other 15 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' database_PDB_caveat 4 3 'Structure model' entity 5 3 'Structure model' exptl_crystal_grow 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' pdbx_nonpoly_scheme 8 3 'Structure model' pdbx_validate_chiral 9 3 'Structure model' struct_asym 10 3 'Structure model' struct_conn 11 3 'Structure model' struct_site_gen 12 4 'Structure model' atom_site 13 4 'Structure model' chem_comp 14 4 'Structure model' database_PDB_caveat 15 4 'Structure model' entity 16 4 'Structure model' pdbx_branch_scheme 17 4 'Structure model' pdbx_chem_comp_identifier 18 4 'Structure model' pdbx_database_status 19 4 'Structure model' pdbx_entity_branch 20 4 'Structure model' pdbx_entity_branch_descriptor 21 4 'Structure model' pdbx_entity_branch_link 22 4 'Structure model' pdbx_entity_branch_list 23 4 'Structure model' pdbx_entity_nonpoly 24 4 'Structure model' pdbx_nonpoly_scheme 25 4 'Structure model' pdbx_struct_assembly_gen 26 4 'Structure model' pdbx_struct_conn_angle 27 4 'Structure model' pdbx_validate_chiral 28 4 'Structure model' struct_asym 29 4 'Structure model' struct_conn 30 4 'Structure model' struct_site 31 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.auth_comp_id' 7 3 'Structure model' '_atom_site.label_atom_id' 8 3 'Structure model' '_atom_site.label_comp_id' 9 3 'Structure model' '_atom_site.label_entity_id' 10 3 'Structure model' '_atom_site.type_symbol' 11 3 'Structure model' '_chem_comp.formula' 12 3 'Structure model' '_chem_comp.formula_weight' 13 3 'Structure model' '_chem_comp.id' 14 3 'Structure model' '_chem_comp.mon_nstd_flag' 15 3 'Structure model' '_chem_comp.name' 16 3 'Structure model' '_chem_comp.pdbx_synonyms' 17 3 'Structure model' '_chem_comp.type' 18 3 'Structure model' '_exptl_crystal_grow.method' 19 3 'Structure model' '_exptl_crystal_grow.temp' 20 3 'Structure model' '_pdbx_nonpoly_scheme.entity_id' 21 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 22 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 23 3 'Structure model' '_struct_asym.entity_id' 24 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 3 'Structure model' '_struct_site_gen.auth_comp_id' 28 3 'Structure model' '_struct_site_gen.label_comp_id' 29 4 'Structure model' '_atom_site.auth_asym_id' 30 4 'Structure model' '_atom_site.auth_seq_id' 31 4 'Structure model' '_atom_site.label_asym_id' 32 4 'Structure model' '_atom_site.label_entity_id' 33 4 'Structure model' '_chem_comp.name' 34 4 'Structure model' '_chem_comp.type' 35 4 'Structure model' '_database_PDB_caveat.text' 36 4 'Structure model' '_entity.formula_weight' 37 4 'Structure model' '_entity.pdbx_description' 38 4 'Structure model' '_entity.pdbx_number_of_molecules' 39 4 'Structure model' '_entity.type' 40 4 'Structure model' '_pdbx_database_status.status_code_sf' 41 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 42 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 43 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 44 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 45 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 46 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 47 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 48 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 49 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 50 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 51 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 52 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 53 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 54 4 'Structure model' '_pdbx_struct_conn_angle.value' 55 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 56 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 57 4 'Structure model' '_struct_conn.pdbx_dist_value' 58 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 59 4 'Structure model' '_struct_conn.pdbx_role' 60 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 61 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 62 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 63 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 64 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 65 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 66 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 67 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 68 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 69 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 70 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 71 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 72 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 73 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 9.9680 30.8680 11.1340 -0.1066 -0.1896 -0.1473 0.0174 -0.0189 0.1225 3.0046 3.8229 3.2679 1.0449 -0.9155 -1.6491 -0.0821 -0.0354 0.1176 -0.0303 -0.2426 -0.2276 -0.2912 0.2967 0.2120 'X-RAY DIFFRACTION' 2 ? refined 7.0750 32.5650 37.5710 -0.0486 0.1640 0.0981 0.0358 -0.0418 0.2414 6.3613 3.0388 3.6254 0.4746 -0.3481 0.3612 0.0545 -0.0855 0.0310 -0.1536 0.7718 0.5606 0.0327 -0.4718 -0.4850 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 160 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 161 ? ? A 259 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0019 ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? SHELXD phasing . ? 4 ? ? ? ? SOLVE phasing . ? 5 ? ? ? ? RESOLVE phasing . ? 6 ? ? ? ? # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_entry_details.entry_id 2C9A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE DISCREPANCY, L68 IN ORIGINAL GENE BANK ENTRY IS F68 ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 44 ? ? -114.44 -154.37 2 1 PHE A 46 ? ? -158.18 -157.95 3 1 ASN A 108 ? ? -72.88 26.18 4 1 ARG A 138 ? ? 23.88 51.16 5 1 GLU A 174 ? ? -174.98 139.76 6 1 ARG A 190 ? ? -36.47 128.44 7 1 ASN A 193 ? ? -49.44 154.67 8 1 ASN A 197 ? ? -91.79 -89.10 9 1 ALA A 198 ? ? -133.44 -118.98 10 1 ALA A 214 ? ? -48.09 -81.69 11 1 ASP A 216 ? ? -31.24 132.21 12 1 ARG A 253 ? ? -68.86 30.34 13 1 GLU A 265 ? ? -56.09 3.01 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? C NAG 2 ? 'WRONG HAND' . 2 1 C1 ? C FUC 3 ? 'WRONG HAND' . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1280 n B 2 NAG 2 B NAG 2 A NAG 1281 n B 2 MAN 3 B MAN 3 A MAN 1282 n B 2 MAN 4 B MAN 4 A MAN 1283 n C 3 NAG 1 C NAG 1 A NAG 1284 n C 3 NAG 2 C NAG 2 A NDG 1285 n C 3 FUC 3 C FUC 3 A FUL 1286 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-3DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2-2/a4-b1_b4-c1_c3-d1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 3 'DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-GlcpNAc]{}[(6+1)][b-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 MAN C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 MAN O3 HO3 sing ? 4 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 5 3 3 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 MAN 3 n 2 MAN 4 n 3 NAG 1 n 3 NAG 2 n 3 FUC 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 'SODIUM ION' NA 6 water HOH #