HEADER VIRAL PROTEIN 13-DEC-05 2C9L TITLE STRUCTURE OF THE EPSTEIN-BARR VIRUS ZEBRA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP COMPND 3 *TP*CP*AP*TP*GP*AP*AP*GP*T)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP COMPND 8 *GP*TP*CP*AP*GP*TP*GP*CP*T)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: BZLF1 TRANS-ACTIVATOR PROTEIN; COMPND 13 CHAIN: Y, Z; COMPND 14 FRAGMENT: DNA-BINDING AND DIMERIZATION DOMAIN, RESIDUES 175-236; COMPND 15 SYNONYM: EB1, ZEBRA; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 4 ORGANISM_TAXID: 10376; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 8 ORGANISM_TAXID: 10376; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 11 ORGANISM_TAXID: 10376; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEIN, EPSTEIN-BARR VIRUS, EBV, ZEBRA, BZLF1, ZTA, Z, LYTIC KEYWDS 2 CYCLE ACTIVATION, BZIP PROTEIN, VIRAL PROTEIN DNA-BINDING, NUCLEAR KEYWDS 3 PROTEIN, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.PETOSA,P.MORAND,F.BAUDIN,M.MOULIN,J.B.ARTERO,C.W.MULLER REVDAT 3 13-DEC-23 2C9L 1 REMARK REVDAT 2 24-FEB-09 2C9L 1 VERSN REVDAT 1 21-FEB-06 2C9L 0 JRNL AUTH C.PETOSA,P.MORAND,F.BAUDIN,M.MOULIN,J.B.ARTERO,C.W.MULLER JRNL TITL STRUCTURAL BASIS OF LYTIC CYCLE ACTIVATION BY THE JRNL TITL 2 EPSTEIN-BARR VIRUS ZEBRA PROTEIN JRNL REF MOL.CELL V. 21 565 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16483937 JRNL DOI 10.1016/J.MOLCEL.2006.01.006 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 592 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1019 REMARK 3 NUCLEIC ACID ATOMS : 756 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.57700 REMARK 3 B22 (A**2) : 5.47200 REMARK 3 B33 (A**2) : -0.89500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.36800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 56.81 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS NO SIDE CHAIN DENSITY VISIBLE REMARK 3 FOR RESIDUES LEU175 AND GLU176 IN CHAIN Z. ONLY THE MAIN CHAIN REMARK 3 ATOMS OF THESE RESIDUES ARE INCLUDED IN THE MODEL. REMARK 4 REMARK 4 2C9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9755 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11609 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.08500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.08500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN Y, SER 186 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN Z, CYS 189 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN Y, SER 186 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN Z, CYS 189 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU Z 175 CB CG CD1 CD2 REMARK 470 GLU Z 176 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP Z 236 O HOH Z 2014 1.72 REMARK 500 OXT ASP Y 236 O HOH Y 2034 1.97 REMARK 500 N THR Y 234 O HOH Y 2033 2.05 REMARK 500 NZ LYS Z 207 O HOH Z 2013 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT A 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC A 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA A 13 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT A 14 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA A 17 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG A 18 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA B 102 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT B 104 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT B 105 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 106 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT B 108 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT B 112 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC B 113 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 115 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC B 118 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 119 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO Y 235 -179.32 -67.13 REMARK 500 GLU Z 176 121.09 106.94 REMARK 500 LYS Z 178 36.31 -82.57 REMARK 500 SER Z 224 49.17 -90.67 REMARK 500 PRO Z 235 72.89 -62.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZSD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HLA-B*3501 PRESENTING AN 11-MER EBVANTIGEN REMARK 900 EPLPQGQLTAY REMARK 900 RELATED ID: 2AXF RELATED DB: PDB REMARK 900 THE IMMUNOGENICITY OF A VIRAL CYTOTOXIC T CELL EPITOPE ISCONTROLLED REMARK 900 BY ITS MHC-BOUND CONFORMATION REMARK 900 RELATED ID: 2AXG RELATED DB: PDB REMARK 900 THE IMMUNOGENICITY OF A VIRAL CYTOTOXIC T CELL EPITOPE ISCONTROLLED REMARK 900 BY ITS MHC-BOUND CONFORMATION REMARK 900 RELATED ID: 2C9N RELATED DB: PDB REMARK 900 STRUCTURE OF THE EPSTEIN-BARR VIRUS ZEBRA PROTEIN AT APPROXIMATELY REMARK 900 3.5 ANGSTROM RESOLUTION DBREF 2C9L A 1 19 PDB 2C9L 2C9L 1 19 DBREF 2C9L B 102 119 PDB 2C9L 2C9L 102 119 DBREF 2C9L Y 174 174 PDB 2C9L 2C9L 174 174 DBREF 2C9L Y 175 236 UNP P03206 BZLF1_EBV 175 236 DBREF 2C9L Z 174 174 PDB 2C9L 2C9L 174 174 DBREF 2C9L Z 175 236 UNP P03206 BZLF1_EBV 175 236 SEQADV 2C9L ALA Y 186 UNP P03206 SER 186 ENGINEERED MUTATION SEQADV 2C9L ALA Z 186 UNP P03206 SER 186 ENGINEERED MUTATION SEQADV 2C9L SER Y 189 UNP P03206 CYS 189 ENGINEERED MUTATION SEQADV 2C9L SER Z 189 UNP P03206 CYS 189 ENGINEERED MUTATION SEQRES 1 A 19 DA DA DG DC DA DC DT DG DA DC DT DC DA SEQRES 2 A 19 DT DG DA DA DG DT SEQRES 1 B 18 DA DC DT DT DC DA DT DG DA DG DT DC DA SEQRES 2 B 18 DG DT DG DC DT SEQRES 1 Y 63 MET LEU GLU ILE LYS ARG TYR LYS ASN ARG VAL ALA ALA SEQRES 2 Y 63 ARG LYS SER ARG ALA LYS PHE LYS GLN LEU LEU GLN HIS SEQRES 3 Y 63 TYR ARG GLU VAL ALA ALA ALA LYS SER SER GLU ASN ASP SEQRES 4 Y 63 ARG LEU ARG LEU LEU LEU LYS GLN MET CYS PRO SER LEU SEQRES 5 Y 63 ASP VAL ASP SER ILE ILE PRO ARG THR PRO ASP SEQRES 1 Z 63 MET LEU GLU ILE LYS ARG TYR LYS ASN ARG VAL ALA ALA SEQRES 2 Z 63 ARG LYS SER ARG ALA LYS PHE LYS GLN LEU LEU GLN HIS SEQRES 3 Z 63 TYR ARG GLU VAL ALA ALA ALA LYS SER SER GLU ASN ASP SEQRES 4 Z 63 ARG LEU ARG LEU LEU LEU LYS GLN MET CYS PRO SER LEU SEQRES 5 Z 63 ASP VAL ASP SER ILE ILE PRO ARG THR PRO ASP FORMUL 5 HOH *81(H2 O) HELIX 1 1 MET Y 174 CYS Y 222 1 49 HELIX 2 2 ASP Y 226 ILE Y 231 1 6 HELIX 3 3 LYS Z 178 CYS Z 222 1 45 HELIX 4 4 ASP Z 226 ILE Z 230 5 5 CRYST1 94.170 26.520 98.090 90.00 103.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010619 0.000000 0.002638 0.00000 SCALE2 0.000000 0.037707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010505 0.00000