data_2CA9 # _entry.id 2CA9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CA9 pdb_00002ca9 10.2210/pdb2ca9/pdb PDBE EBI-26892 ? ? WWPDB D_1290026892 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-17 2 'Structure model' 1 1 2013-03-06 3 'Structure model' 1 2 2024-05-01 4 'Structure model' 1 3 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' Other 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 3 'Structure model' 'Derived calculations' 10 3 'Structure model' Other 11 3 'Structure model' 'Refinement description' 12 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 4 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CA9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2005-12-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2CAD unspecified 'NIKR FROM HELICOBACTER PYLORI IN CLOSED TRANS-CONFORMATION AND NICKEL BOUND TO 2F, 2X AND 2I SITES' PDB 2CAJ unspecified 'NI2-HPNIKR HPNIKR IN CLOSED TRANS- CONFORMATION AND NICKEL BOUND TO 4 INTERMEDIARY SITES' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dian, C.' 1 'Schauer, K.' 2 'Kapp, U.' 3 'McSweeney, S.M.' 4 'Labigne, A.' 5 'Terradot, L.' 6 # _citation.id primary _citation.title 'Structural Basis of the Nickel Response in Helicobacter Pylori: Crystal Structures of Hpnikr in Apo and Nickel-Bound States.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 361 _citation.page_first 715 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16872629 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2006.06.058 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dian, C.' 1 ? primary 'Schauer, K.' 2 ? primary 'Kapp, U.' 3 ? primary 'Mcsweeney, S.M.' 4 ? primary 'Labigne, A.' 5 ? primary 'Terradot, L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PUTATIVE NICKEL-RESPONSIVE REGULATOR' 17170.271 2 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 7 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELN QRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYNE ; _entity_poly.pdbx_seq_one_letter_code_can ;MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELN QRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFEYNE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 THR n 1 4 PRO n 1 5 ASN n 1 6 LYS n 1 7 ASP n 1 8 ASP n 1 9 SER n 1 10 ILE n 1 11 ILE n 1 12 ARG n 1 13 PHE n 1 14 SER n 1 15 VAL n 1 16 SER n 1 17 LEU n 1 18 GLN n 1 19 GLN n 1 20 ASN n 1 21 LEU n 1 22 LEU n 1 23 ASP n 1 24 GLU n 1 25 LEU n 1 26 ASP n 1 27 ASN n 1 28 ARG n 1 29 ILE n 1 30 ILE n 1 31 LYS n 1 32 ASN n 1 33 GLY n 1 34 TYR n 1 35 SER n 1 36 SER n 1 37 ARG n 1 38 SER n 1 39 GLU n 1 40 LEU n 1 41 VAL n 1 42 ARG n 1 43 ASP n 1 44 MET n 1 45 ILE n 1 46 ARG n 1 47 GLU n 1 48 LYS n 1 49 LEU n 1 50 VAL n 1 51 GLU n 1 52 ASP n 1 53 ASN n 1 54 TRP n 1 55 ALA n 1 56 GLU n 1 57 ASP n 1 58 ASN n 1 59 PRO n 1 60 ASN n 1 61 ASP n 1 62 GLU n 1 63 SER n 1 64 LYS n 1 65 ILE n 1 66 ALA n 1 67 VAL n 1 68 LEU n 1 69 VAL n 1 70 VAL n 1 71 ILE n 1 72 TYR n 1 73 ASP n 1 74 HIS n 1 75 HIS n 1 76 GLN n 1 77 ARG n 1 78 GLU n 1 79 LEU n 1 80 ASN n 1 81 GLN n 1 82 ARG n 1 83 MET n 1 84 ILE n 1 85 ASP n 1 86 ILE n 1 87 GLN n 1 88 HIS n 1 89 ALA n 1 90 SER n 1 91 GLY n 1 92 THR n 1 93 HIS n 1 94 VAL n 1 95 LEU n 1 96 CYS n 1 97 THR n 1 98 THR n 1 99 HIS n 1 100 ILE n 1 101 HIS n 1 102 MET n 1 103 ASP n 1 104 GLU n 1 105 HIS n 1 106 ASN n 1 107 CYS n 1 108 LEU n 1 109 GLU n 1 110 THR n 1 111 ILE n 1 112 ILE n 1 113 LEU n 1 114 GLN n 1 115 GLY n 1 116 ASN n 1 117 SER n 1 118 PHE n 1 119 GLU n 1 120 ILE n 1 121 GLN n 1 122 ARG n 1 123 LEU n 1 124 GLN n 1 125 LEU n 1 126 GLU n 1 127 ILE n 1 128 GLY n 1 129 GLY n 1 130 LEU n 1 131 ARG n 1 132 GLY n 1 133 VAL n 1 134 LYS n 1 135 PHE n 1 136 ALA n 1 137 LYS n 1 138 LEU n 1 139 THR n 1 140 LYS n 1 141 ALA n 1 142 SER n 1 143 SER n 1 144 PHE n 1 145 GLU n 1 146 TYR n 1 147 ASN n 1 148 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 26695 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HELICOBACTER PYLORI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 85962 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 PRO 4 4 ? ? ? A . n A 1 5 ASN 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 ASP 7 7 ? ? ? A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLU 51 51 ? ? ? A . n A 1 52 ASP 52 52 ? ? ? A . n A 1 53 ASN 53 53 ? ? ? A . n A 1 54 TRP 54 54 ? ? ? A . n A 1 55 ALA 55 55 ? ? ? A . n A 1 56 GLU 56 56 ? ? ? A . n A 1 57 ASP 57 57 ? ? ? A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 MET 102 102 102 MET MET A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 TYR 146 146 146 TYR TYR A . n A 1 147 ASN 147 147 ? ? ? A . n A 1 148 GLU 148 148 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ASP 2 2 ? ? ? B . n B 1 3 THR 3 3 ? ? ? B . n B 1 4 PRO 4 4 ? ? ? B . n B 1 5 ASN 5 5 ? ? ? B . n B 1 6 LYS 6 6 ? ? ? B . n B 1 7 ASP 7 7 ? ? ? B . n B 1 8 ASP 8 8 ? ? ? B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ARG 12 12 12 ARG ARG B . n B 1 13 PHE 13 13 13 PHE PHE B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 ASP 26 26 26 ASP ASP B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 ILE 30 30 30 ILE ILE B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 ASN 32 32 32 ASN ASN B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 SER 35 35 35 SER SER B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 ARG 37 37 37 ARG ARG B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 ASP 43 43 43 ASP ASP B . n B 1 44 MET 44 44 44 MET MET B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 VAL 50 50 50 VAL VAL B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 ASP 52 52 52 ASP ASP B . n B 1 53 ASN 53 53 53 ASN ASN B . n B 1 54 TRP 54 54 54 TRP TRP B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 ASP 57 57 57 ASP ASP B . n B 1 58 ASN 58 58 58 ASN ASN B . n B 1 59 PRO 59 59 59 PRO PRO B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 ASP 61 61 61 ASP ASP B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 LYS 64 64 64 LYS LYS B . n B 1 65 ILE 65 65 65 ILE ILE B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 VAL 69 69 69 VAL VAL B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 ILE 71 71 71 ILE ILE B . n B 1 72 TYR 72 72 72 TYR TYR B . n B 1 73 ASP 73 73 73 ASP ASP B . n B 1 74 HIS 74 74 74 HIS HIS B . n B 1 75 HIS 75 75 75 HIS HIS B . n B 1 76 GLN 76 76 76 GLN GLN B . n B 1 77 ARG 77 77 77 ARG ARG B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 GLN 81 81 81 GLN GLN B . n B 1 82 ARG 82 82 82 ARG ARG B . n B 1 83 MET 83 83 83 MET MET B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 ILE 86 86 86 ILE ILE B . n B 1 87 GLN 87 87 87 GLN GLN B . n B 1 88 HIS 88 88 88 HIS HIS B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 GLY 91 91 91 GLY GLY B . n B 1 92 THR 92 92 92 THR THR B . n B 1 93 HIS 93 93 93 HIS HIS B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 LEU 95 95 95 LEU LEU B . n B 1 96 CYS 96 96 96 CYS CYS B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 THR 98 98 98 THR THR B . n B 1 99 HIS 99 99 99 HIS HIS B . n B 1 100 ILE 100 100 100 ILE ILE B . n B 1 101 HIS 101 101 101 HIS HIS B . n B 1 102 MET 102 102 102 MET MET B . n B 1 103 ASP 103 103 103 ASP ASP B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 HIS 105 105 105 HIS HIS B . n B 1 106 ASN 106 106 106 ASN ASN B . n B 1 107 CYS 107 107 107 CYS CYS B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 GLU 109 109 109 GLU GLU B . n B 1 110 THR 110 110 110 THR THR B . n B 1 111 ILE 111 111 111 ILE ILE B . n B 1 112 ILE 112 112 112 ILE ILE B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 GLN 114 114 114 GLN GLN B . n B 1 115 GLY 115 115 115 GLY GLY B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 PHE 118 118 118 PHE PHE B . n B 1 119 GLU 119 119 119 GLU GLU B . n B 1 120 ILE 120 120 120 ILE ILE B . n B 1 121 GLN 121 121 121 GLN GLN B . n B 1 122 ARG 122 122 122 ARG ARG B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 GLN 124 124 124 GLN GLN B . n B 1 125 LEU 125 125 125 LEU LEU B . n B 1 126 GLU 126 126 126 GLU GLU B . n B 1 127 ILE 127 127 127 ILE ILE B . n B 1 128 GLY 128 128 128 GLY GLY B . n B 1 129 GLY 129 129 129 GLY GLY B . n B 1 130 LEU 130 130 130 LEU LEU B . n B 1 131 ARG 131 131 131 ARG ARG B . n B 1 132 GLY 132 132 132 GLY GLY B . n B 1 133 VAL 133 133 133 VAL VAL B . n B 1 134 LYS 134 134 134 LYS LYS B . n B 1 135 PHE 135 135 135 PHE PHE B . n B 1 136 ALA 136 136 136 ALA ALA B . n B 1 137 LYS 137 137 137 LYS LYS B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 THR 139 139 139 THR THR B . n B 1 140 LYS 140 140 140 LYS LYS B . n B 1 141 ALA 141 141 141 ALA ALA B . n B 1 142 SER 142 142 142 SER SER B . n B 1 143 SER 143 143 143 SER SER B . n B 1 144 PHE 144 144 144 PHE PHE B . n B 1 145 GLU 145 145 145 GLU GLU B . n B 1 146 TYR 146 146 146 TYR TYR B . n B 1 147 ASN 147 147 147 ASN ASN B . n B 1 148 GLU 148 148 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT 1 1147 1147 FMT FMT A . D 2 FMT 1 1148 1148 FMT FMT A . E 2 FMT 1 1149 1149 FMT FMT A . F 2 FMT 1 1150 1150 FMT FMT A . G 3 GOL 1 1151 1151 GOL GOL A . H 3 GOL 1 1152 1152 GOL GOL A . I 2 FMT 1 1148 1148 FMT FMT B . J 2 FMT 1 1149 1149 FMT FMT B . K 2 FMT 1 1150 1150 FMT FMT B . L 3 GOL 1 1151 1151 GOL GOL B . M 4 HOH 1 2001 2001 HOH HOH A . M 4 HOH 2 2002 2002 HOH HOH A . M 4 HOH 3 2003 2003 HOH HOH A . M 4 HOH 4 2004 2004 HOH HOH A . M 4 HOH 5 2005 2005 HOH HOH A . M 4 HOH 6 2006 2006 HOH HOH A . M 4 HOH 7 2007 2007 HOH HOH A . M 4 HOH 8 2008 2008 HOH HOH A . M 4 HOH 9 2009 2009 HOH HOH A . M 4 HOH 10 2010 2010 HOH HOH A . M 4 HOH 11 2011 2011 HOH HOH A . M 4 HOH 12 2012 2012 HOH HOH A . M 4 HOH 13 2013 2013 HOH HOH A . M 4 HOH 14 2014 2014 HOH HOH A . M 4 HOH 15 2015 2015 HOH HOH A . M 4 HOH 16 2016 2016 HOH HOH A . M 4 HOH 17 2017 2017 HOH HOH A . M 4 HOH 18 2018 2018 HOH HOH A . M 4 HOH 19 2019 2019 HOH HOH A . M 4 HOH 20 2020 2020 HOH HOH A . M 4 HOH 21 2021 2021 HOH HOH A . M 4 HOH 22 2022 2022 HOH HOH A . M 4 HOH 23 2023 2023 HOH HOH A . M 4 HOH 24 2024 2024 HOH HOH A . M 4 HOH 25 2025 2025 HOH HOH A . M 4 HOH 26 2026 2026 HOH HOH A . M 4 HOH 27 2027 2027 HOH HOH A . M 4 HOH 28 2028 2028 HOH HOH A . M 4 HOH 29 2029 2029 HOH HOH A . M 4 HOH 30 2030 2030 HOH HOH A . M 4 HOH 31 2031 2031 HOH HOH A . M 4 HOH 32 2032 2032 HOH HOH A . M 4 HOH 33 2033 2033 HOH HOH A . M 4 HOH 34 2034 2034 HOH HOH A . M 4 HOH 35 2035 2035 HOH HOH A . M 4 HOH 36 2036 2036 HOH HOH A . M 4 HOH 37 2037 2037 HOH HOH A . M 4 HOH 38 2038 2038 HOH HOH A . M 4 HOH 39 2039 2039 HOH HOH A . M 4 HOH 40 2040 2040 HOH HOH A . M 4 HOH 41 2041 2041 HOH HOH A . M 4 HOH 42 2042 2042 HOH HOH A . M 4 HOH 43 2043 2043 HOH HOH A . M 4 HOH 44 2044 2044 HOH HOH A . M 4 HOH 45 2045 2045 HOH HOH A . M 4 HOH 46 2046 2046 HOH HOH A . M 4 HOH 47 2047 2047 HOH HOH A . M 4 HOH 48 2048 2048 HOH HOH A . M 4 HOH 49 2049 2049 HOH HOH A . M 4 HOH 50 2050 2050 HOH HOH A . M 4 HOH 51 2051 2051 HOH HOH A . M 4 HOH 52 2052 2052 HOH HOH A . M 4 HOH 53 2053 2053 HOH HOH A . M 4 HOH 54 2054 2054 HOH HOH A . M 4 HOH 55 2055 2055 HOH HOH A . M 4 HOH 56 2056 2056 HOH HOH A . M 4 HOH 57 2057 2057 HOH HOH A . M 4 HOH 58 2058 2058 HOH HOH A . M 4 HOH 59 2059 2059 HOH HOH A . M 4 HOH 60 2060 2060 HOH HOH A . M 4 HOH 61 2061 2061 HOH HOH A . M 4 HOH 62 2062 2062 HOH HOH A . M 4 HOH 63 2063 2063 HOH HOH A . M 4 HOH 64 2064 2064 HOH HOH A . M 4 HOH 65 2065 2065 HOH HOH A . M 4 HOH 66 2066 2066 HOH HOH A . M 4 HOH 67 2067 2067 HOH HOH A . M 4 HOH 68 2068 2068 HOH HOH A . N 4 HOH 1 2001 2001 HOH HOH B . N 4 HOH 2 2002 2002 HOH HOH B . N 4 HOH 3 2003 2003 HOH HOH B . N 4 HOH 4 2004 2004 HOH HOH B . N 4 HOH 5 2005 2005 HOH HOH B . N 4 HOH 6 2006 2006 HOH HOH B . N 4 HOH 7 2007 2007 HOH HOH B . N 4 HOH 8 2008 2008 HOH HOH B . N 4 HOH 9 2009 2009 HOH HOH B . N 4 HOH 10 2010 2010 HOH HOH B . N 4 HOH 11 2011 2011 HOH HOH B . N 4 HOH 12 2012 2012 HOH HOH B . N 4 HOH 13 2013 2013 HOH HOH B . N 4 HOH 14 2014 2014 HOH HOH B . N 4 HOH 15 2015 2015 HOH HOH B . N 4 HOH 16 2016 2016 HOH HOH B . N 4 HOH 17 2017 2017 HOH HOH B . N 4 HOH 18 2018 2018 HOH HOH B . N 4 HOH 19 2019 2019 HOH HOH B . N 4 HOH 20 2020 2020 HOH HOH B . N 4 HOH 21 2021 2021 HOH HOH B . N 4 HOH 22 2022 2022 HOH HOH B . N 4 HOH 23 2023 2023 HOH HOH B . N 4 HOH 24 2024 2024 HOH HOH B . N 4 HOH 25 2025 2025 HOH HOH B . N 4 HOH 26 2026 2026 HOH HOH B . N 4 HOH 27 2027 2027 HOH HOH B . N 4 HOH 28 2028 2028 HOH HOH B . N 4 HOH 29 2029 2029 HOH HOH B . N 4 HOH 30 2030 2030 HOH HOH B . N 4 HOH 31 2031 2031 HOH HOH B . N 4 HOH 32 2032 2032 HOH HOH B . N 4 HOH 33 2033 2033 HOH HOH B . N 4 HOH 34 2034 2034 HOH HOH B . N 4 HOH 35 2035 2035 HOH HOH B . N 4 HOH 36 2036 2036 HOH HOH B . N 4 HOH 37 2037 2037 HOH HOH B . N 4 HOH 38 2038 2038 HOH HOH B . N 4 HOH 39 2039 2039 HOH HOH B . N 4 HOH 40 2040 2040 HOH HOH B . N 4 HOH 41 2041 2041 HOH HOH B . N 4 HOH 42 2042 2042 HOH HOH B . N 4 HOH 43 2043 2043 HOH HOH B . N 4 HOH 44 2044 2044 HOH HOH B . N 4 HOH 45 2045 2045 HOH HOH B . N 4 HOH 46 2046 2046 HOH HOH B . N 4 HOH 47 2047 2047 HOH HOH B . N 4 HOH 48 2048 2048 HOH HOH B . N 4 HOH 49 2049 2049 HOH HOH B . N 4 HOH 50 2050 2050 HOH HOH B . N 4 HOH 51 2051 2051 HOH HOH B . N 4 HOH 52 2052 2052 HOH HOH B . N 4 HOH 53 2053 2053 HOH HOH B . N 4 HOH 54 2054 2054 HOH HOH B . N 4 HOH 55 2055 2055 HOH HOH B . N 4 HOH 56 2056 2056 HOH HOH B . N 4 HOH 57 2057 2057 HOH HOH B . N 4 HOH 58 2058 2058 HOH HOH B . N 4 HOH 59 2059 2059 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 8 ? CG ? A ASP 8 CG 2 1 Y 1 A ASP 8 ? OD1 ? A ASP 8 OD1 3 1 Y 1 A ASP 8 ? OD2 ? A ASP 8 OD2 4 1 Y 1 A ILE 11 ? CD1 ? A ILE 11 CD1 5 1 Y 1 A LYS 48 ? CG ? A LYS 48 CG 6 1 Y 1 A LYS 48 ? CD ? A LYS 48 CD 7 1 Y 1 A LYS 48 ? CE ? A LYS 48 CE 8 1 Y 1 A LYS 48 ? NZ ? A LYS 48 NZ 9 1 Y 1 A SER 143 ? OG ? A SER 143 OG 10 1 Y 1 A PHE 144 ? CG ? A PHE 144 CG 11 1 Y 1 A PHE 144 ? CD1 ? A PHE 144 CD1 12 1 Y 1 A PHE 144 ? CD2 ? A PHE 144 CD2 13 1 Y 1 A PHE 144 ? CE1 ? A PHE 144 CE1 14 1 Y 1 A PHE 144 ? CE2 ? A PHE 144 CE2 15 1 Y 1 A PHE 144 ? CZ ? A PHE 144 CZ 16 1 Y 1 B SER 9 ? OG ? B SER 9 OG 17 1 Y 1 B ARG 12 ? CG ? B ARG 12 CG 18 1 Y 1 B ARG 12 ? CD ? B ARG 12 CD 19 1 Y 1 B ARG 12 ? NE ? B ARG 12 NE 20 1 Y 1 B ARG 12 ? CZ ? B ARG 12 CZ 21 1 Y 1 B ARG 12 ? NH1 ? B ARG 12 NH1 22 1 Y 1 B ARG 12 ? NH2 ? B ARG 12 NH2 23 1 Y 1 B ASP 57 ? CB ? B ASP 57 CB 24 1 Y 1 B ASP 57 ? CG ? B ASP 57 CG 25 1 Y 1 B ASP 57 ? OD1 ? B ASP 57 OD1 26 1 Y 1 B ASP 57 ? OD2 ? B ASP 57 OD2 27 1 Y 1 B LYS 137 ? CE ? B LYS 137 CE 28 1 Y 1 B LYS 137 ? NZ ? B LYS 137 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MOSFLM 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 2CA9 _cell.length_a 71.055 _cell.length_b 71.055 _cell.length_c 229.023 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CA9 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # _exptl.entry_id 2CA9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 49.1 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.80 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.9-1 M NA-FORMATE, O.1 M NA-CITRATE PH 4' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9340 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.9340 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CA9 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 61.550 _reflns.d_resolution_high 2.050 _reflns.number_obs 24159 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.0000 _reflns.B_iso_Wilson_estimate 24.80 _reflns.pdbx_redundancy 5.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.44000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.700 _reflns_shell.pdbx_redundancy 5.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CA9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21171 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 61.55 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.250 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1140 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 29.66 _refine.aniso_B[1][1] -0.02000 _refine.aniso_B[2][2] -0.02000 _refine.aniso_B[3][3] 0.03000 _refine.aniso_B[1][2] -0.01000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'NIKR FROM HELICOBACTER PYLORI SOLVED BY SAD METHOD USING MERCURY DERIVATIVE.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.192 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.overall_SU_ML 0.118 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.171 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2171 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 2337 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 61.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.021 ? 2344 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.673 1.938 ? 3161 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.913 5.000 ? 292 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.215 24.444 ? 126 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.517 15.000 ? 429 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.545 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.134 0.200 ? 354 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1774 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.232 0.200 ? 1023 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.304 0.200 ? 1587 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.176 0.200 ? 160 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.245 0.200 ? 69 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.343 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.518 1.500 ? 1469 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.338 2.000 ? 2277 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.340 3.000 ? 965 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.163 4.500 ? 880 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.10 _refine_ls_shell.number_reflns_R_work 1517 _refine_ls_shell.R_factor_R_work 0.2220 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2860 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 2CA9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2CA9 _struct.title 'apo-NIKR from helicobacter pylori in closed trans-conformation' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CA9 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;NICKEL UPTAKE, TRANSCRIPTION REGULATOR, RIBBON-HELIX-HELIX, ACIDIC-ADAPTIVE RESPONSE, TRANSCRIPTIONAL REGULATION, DNA-BINDING, METAL-BINDING, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NIKR_HELPY _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O25896 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2CA9 A 1 ? 148 ? O25896 1 ? 148 ? 1 148 2 1 2CA9 B 1 ? 148 ? O25896 1 ? 148 ? 1 148 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 18050 ? 1 MORE -92.7 ? 1 'SSA (A^2)' 23590 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 19 ? ASN A 32 ? GLN A 19 ASN A 32 1 ? 14 HELX_P HELX_P2 2 ARG A 37 ? LEU A 49 ? ARG A 37 LEU A 49 1 ? 13 HELX_P HELX_P3 3 LEU A 79 ? SER A 90 ? LEU A 79 SER A 90 1 ? 12 HELX_P HELX_P4 4 SER A 117 ? GLY A 128 ? SER A 117 GLY A 128 1 ? 12 HELX_P HELX_P5 5 GLN B 19 ? ASP B 26 ? GLN B 19 ASP B 26 1 ? 8 HELX_P HELX_P6 6 ILE B 30 ? ASN B 32 ? ILE B 30 ASN B 32 5 ? 3 HELX_P HELX_P7 7 ARG B 37 ? GLU B 56 ? ARG B 37 GLU B 56 1 ? 20 HELX_P HELX_P8 8 LEU B 79 ? SER B 90 ? LEU B 79 SER B 90 1 ? 12 HELX_P HELX_P9 9 SER B 117 ? GLY B 128 ? SER B 117 GLY B 128 1 ? 12 HELX_P HELX_P10 10 SER B 143 ? GLU B 145 ? SER B 143 GLU B 145 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 96 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 96 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 96 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 8_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.807 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 96 _pdbx_modification_feature.label_alt_id A _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 96 _pdbx_modification_feature.modified_residue_label_alt_id A _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 96 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 96 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 8_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 4 ? BA ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 10 ? GLN A 18 ? ILE A 10 GLN A 18 AA 2 ILE B 10 ? GLN B 18 ? ILE B 10 GLN B 18 AB 1 HIS A 93 ? HIS A 101 ? HIS A 93 HIS A 101 AB 2 ASN A 106 ? GLY A 115 ? ASN A 106 GLY A 115 AB 3 LYS A 64 ? ASP A 73 ? LYS A 64 ASP A 73 AB 4 VAL A 133 ? ALA A 141 ? VAL A 133 ALA A 141 BA 1 HIS B 93 ? HIS B 101 ? HIS B 93 HIS B 101 BA 2 CYS B 107 ? GLY B 115 ? CYS B 107 GLY B 115 BA 3 LYS B 64 ? TYR B 72 ? LYS B 64 TYR B 72 BA 4 VAL B 133 ? ALA B 141 ? VAL B 133 ALA B 141 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 17 ? N LEU A 17 O ILE B 11 ? O ILE B 11 AB 1 2 N ILE A 100 ? N ILE A 100 O LEU A 108 ? O LEU A 108 AB 2 3 N GLY A 115 ? N GLY A 115 O LYS A 64 ? O LYS A 64 AB 3 4 O ILE A 71 ? O ILE A 71 N LYS A 134 ? N LYS A 134 BA 1 2 N ILE B 100 ? N ILE B 100 O LEU B 108 ? O LEU B 108 BA 2 3 N GLY B 115 ? N GLY B 115 O LYS B 64 ? O LYS B 64 BA 3 4 O ILE B 71 ? O ILE B 71 N LYS B 134 ? N LYS B 134 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMT 1147 ? 5 'BINDING SITE FOR RESIDUE FMT A 1147' AC2 Software A FMT 1148 ? 6 'BINDING SITE FOR RESIDUE FMT A 1148' AC3 Software A FMT 1149 ? 4 'BINDING SITE FOR RESIDUE FMT A 1149' AC4 Software A FMT 1150 ? 5 'BINDING SITE FOR RESIDUE FMT A 1150' AC5 Software A GOL 1151 ? 8 'BINDING SITE FOR RESIDUE GOL A 1151' AC6 Software A GOL 1152 ? 8 'BINDING SITE FOR RESIDUE GOL A 1152' AC7 Software B FMT 1148 ? 4 'BINDING SITE FOR RESIDUE FMT B 1148' AC8 Software B FMT 1149 ? 4 'BINDING SITE FOR RESIDUE FMT B 1149' AC9 Software B FMT 1150 ? 7 'BINDING SITE FOR RESIDUE FMT B 1150' BC1 Software B GOL 1151 ? 4 'BINDING SITE FOR RESIDUE GOL B 1151' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TYR A 72 ? TYR A 72 . ? 1_555 ? 2 AC1 5 HIS A 74 ? HIS A 74 . ? 1_555 ? 3 AC1 5 ASN A 80 ? ASN A 80 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH A 2037 . ? 1_555 ? 5 AC1 5 HIS B 88 ? HIS B 88 . ? 8_555 ? 6 AC2 6 ARG A 82 ? ARG A 82 . ? 1_555 ? 7 AC2 6 ARG A 82 ? ARG A 82 . ? 12_555 ? 8 AC2 6 ARG A 131 ? ARG A 131 . ? 1_555 ? 9 AC2 6 ARG A 131 ? ARG A 131 . ? 12_555 ? 10 AC2 6 GOL H . ? GOL A 1152 . ? 12_555 ? 11 AC2 6 GOL H . ? GOL A 1152 . ? 1_555 ? 12 AC3 4 LYS A 137 ? LYS A 137 . ? 1_555 ? 13 AC3 4 LEU A 138 ? LEU A 138 . ? 1_555 ? 14 AC3 4 LEU B 138 ? LEU B 138 . ? 1_555 ? 15 AC3 4 THR B 139 ? THR B 139 . ? 1_555 ? 16 AC4 5 HIS A 74 ? HIS A 74 . ? 1_555 ? 17 AC4 5 HIS A 75 ? HIS A 75 . ? 1_555 ? 18 AC4 5 HOH M . ? HOH A 2064 . ? 1_555 ? 19 AC4 5 HOH M . ? HOH A 2065 . ? 1_555 ? 20 AC4 5 HIS B 88 ? HIS B 88 . ? 8_555 ? 21 AC5 8 GLU A 78 ? GLU A 78 . ? 12_555 ? 22 AC5 8 GLN A 81 ? GLN A 81 . ? 12_555 ? 23 AC5 8 ARG A 82 ? ARG A 82 . ? 1_555 ? 24 AC5 8 LEU A 130 ? LEU A 130 . ? 1_555 ? 25 AC5 8 HOH M . ? HOH A 2030 . ? 1_555 ? 26 AC5 8 HOH M . ? HOH A 2030 . ? 12_555 ? 27 AC5 8 HOH M . ? HOH A 2066 . ? 1_555 ? 28 AC5 8 ARG B 77 ? ARG B 77 . ? 6_555 ? 29 AC6 8 ARG A 82 ? ARG A 82 . ? 1_555 ? 30 AC6 8 GLY A 129 ? GLY A 129 . ? 1_555 ? 31 AC6 8 LEU A 130 ? LEU A 130 . ? 1_555 ? 32 AC6 8 ARG A 131 ? ARG A 131 . ? 1_555 ? 33 AC6 8 FMT D . ? FMT A 1148 . ? 12_555 ? 34 AC6 8 FMT D . ? FMT A 1148 . ? 1_555 ? 35 AC6 8 HOH M . ? HOH A 2067 . ? 1_555 ? 36 AC6 8 HOH M . ? HOH A 2068 . ? 1_555 ? 37 AC7 4 LYS A 31 ? LYS A 31 . ? 10_664 ? 38 AC7 4 ARG B 82 ? ARG B 82 . ? 1_555 ? 39 AC7 4 ILE B 86 ? ILE B 86 . ? 1_555 ? 40 AC7 4 HOH N . ? HOH B 2033 . ? 1_555 ? 41 AC8 4 TYR B 72 ? TYR B 72 . ? 1_555 ? 42 AC8 4 HIS B 99 ? HIS B 99 . ? 1_555 ? 43 AC8 4 HIS B 101 ? HIS B 101 . ? 1_555 ? 44 AC8 4 HOH N . ? HOH B 2019 . ? 1_555 ? 45 AC9 7 TYR A 34 ? TYR A 34 . ? 1_555 ? 46 AC9 7 LEU A 40 ? LEU A 40 . ? 1_555 ? 47 AC9 7 LYS B 48 ? LYS B 48 . ? 1_555 ? 48 AC9 7 ASP B 52 ? ASP B 52 . ? 1_555 ? 49 AC9 7 GLY B 129 ? GLY B 129 . ? 10_664 ? 50 AC9 7 HOH N . ? HOH B 2011 . ? 1_555 ? 51 AC9 7 HOH N . ? HOH B 2059 . ? 1_555 ? 52 BC1 4 ASN B 80 ? ASN B 80 . ? 1_555 ? 53 BC1 4 MET B 83 ? MET B 83 . ? 1_555 ? 54 BC1 4 GLN B 87 ? GLN B 87 . ? 1_555 ? 55 BC1 4 GLU B 109 ? GLU B 109 . ? 1_555 ? # _pdbx_entry_details.entry_id 2CA9 _pdbx_entry_details.compound_details 'TRANSCRIPTIONAL REGULATOR.' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 9 ? ? 172.04 163.20 2 1 GLU A 78 ? ? 66.25 -0.90 3 1 CYS A 96 ? B -177.28 145.45 4 1 ASP A 103 ? ? -153.07 -159.65 5 1 GLU A 145 ? ? -85.21 46.55 6 1 ASP B 57 ? ? -38.38 113.70 7 1 ASN B 58 ? ? -38.42 130.64 8 1 GLU B 78 ? ? 80.23 -19.96 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 8 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 9 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -144.66 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A FMT 1148 ? D FMT . 2 1 A HOH 2030 ? M HOH . # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A PRO 4 ? A PRO 4 5 1 Y 1 A ASN 5 ? A ASN 5 6 1 Y 1 A LYS 6 ? A LYS 6 7 1 Y 1 A ASP 7 ? A ASP 7 8 1 Y 1 A GLU 51 ? A GLU 51 9 1 Y 1 A ASP 52 ? A ASP 52 10 1 Y 1 A ASN 53 ? A ASN 53 11 1 Y 1 A TRP 54 ? A TRP 54 12 1 Y 1 A ALA 55 ? A ALA 55 13 1 Y 1 A GLU 56 ? A GLU 56 14 1 Y 1 A ASP 57 ? A ASP 57 15 1 Y 1 A ASN 147 ? A ASN 147 16 1 Y 1 A GLU 148 ? A GLU 148 17 1 Y 1 B MET 1 ? B MET 1 18 1 Y 1 B ASP 2 ? B ASP 2 19 1 Y 1 B THR 3 ? B THR 3 20 1 Y 1 B PRO 4 ? B PRO 4 21 1 Y 1 B ASN 5 ? B ASN 5 22 1 Y 1 B LYS 6 ? B LYS 6 23 1 Y 1 B ASP 7 ? B ASP 7 24 1 Y 1 B ASP 8 ? B ASP 8 25 1 Y 1 B GLU 148 ? B GLU 148 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FMT C C N N 88 FMT O1 O N N 89 FMT O2 O N N 90 FMT H H N N 91 FMT HO2 H N N 92 GLN N N N N 93 GLN CA C N S 94 GLN C C N N 95 GLN O O N N 96 GLN CB C N N 97 GLN CG C N N 98 GLN CD C N N 99 GLN OE1 O N N 100 GLN NE2 N N N 101 GLN OXT O N N 102 GLN H H N N 103 GLN H2 H N N 104 GLN HA H N N 105 GLN HB2 H N N 106 GLN HB3 H N N 107 GLN HG2 H N N 108 GLN HG3 H N N 109 GLN HE21 H N N 110 GLN HE22 H N N 111 GLN HXT H N N 112 GLU N N N N 113 GLU CA C N S 114 GLU C C N N 115 GLU O O N N 116 GLU CB C N N 117 GLU CG C N N 118 GLU CD C N N 119 GLU OE1 O N N 120 GLU OE2 O N N 121 GLU OXT O N N 122 GLU H H N N 123 GLU H2 H N N 124 GLU HA H N N 125 GLU HB2 H N N 126 GLU HB3 H N N 127 GLU HG2 H N N 128 GLU HG3 H N N 129 GLU HE2 H N N 130 GLU HXT H N N 131 GLY N N N N 132 GLY CA C N N 133 GLY C C N N 134 GLY O O N N 135 GLY OXT O N N 136 GLY H H N N 137 GLY H2 H N N 138 GLY HA2 H N N 139 GLY HA3 H N N 140 GLY HXT H N N 141 GOL C1 C N N 142 GOL O1 O N N 143 GOL C2 C N N 144 GOL O2 O N N 145 GOL C3 C N N 146 GOL O3 O N N 147 GOL H11 H N N 148 GOL H12 H N N 149 GOL HO1 H N N 150 GOL H2 H N N 151 GOL HO2 H N N 152 GOL H31 H N N 153 GOL H32 H N N 154 GOL HO3 H N N 155 HIS N N N N 156 HIS CA C N S 157 HIS C C N N 158 HIS O O N N 159 HIS CB C N N 160 HIS CG C Y N 161 HIS ND1 N Y N 162 HIS CD2 C Y N 163 HIS CE1 C Y N 164 HIS NE2 N Y N 165 HIS OXT O N N 166 HIS H H N N 167 HIS H2 H N N 168 HIS HA H N N 169 HIS HB2 H N N 170 HIS HB3 H N N 171 HIS HD1 H N N 172 HIS HD2 H N N 173 HIS HE1 H N N 174 HIS HE2 H N N 175 HIS HXT H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 ILE N N N N 180 ILE CA C N S 181 ILE C C N N 182 ILE O O N N 183 ILE CB C N S 184 ILE CG1 C N N 185 ILE CG2 C N N 186 ILE CD1 C N N 187 ILE OXT O N N 188 ILE H H N N 189 ILE H2 H N N 190 ILE HA H N N 191 ILE HB H N N 192 ILE HG12 H N N 193 ILE HG13 H N N 194 ILE HG21 H N N 195 ILE HG22 H N N 196 ILE HG23 H N N 197 ILE HD11 H N N 198 ILE HD12 H N N 199 ILE HD13 H N N 200 ILE HXT H N N 201 LEU N N N N 202 LEU CA C N S 203 LEU C C N N 204 LEU O O N N 205 LEU CB C N N 206 LEU CG C N N 207 LEU CD1 C N N 208 LEU CD2 C N N 209 LEU OXT O N N 210 LEU H H N N 211 LEU H2 H N N 212 LEU HA H N N 213 LEU HB2 H N N 214 LEU HB3 H N N 215 LEU HG H N N 216 LEU HD11 H N N 217 LEU HD12 H N N 218 LEU HD13 H N N 219 LEU HD21 H N N 220 LEU HD22 H N N 221 LEU HD23 H N N 222 LEU HXT H N N 223 LYS N N N N 224 LYS CA C N S 225 LYS C C N N 226 LYS O O N N 227 LYS CB C N N 228 LYS CG C N N 229 LYS CD C N N 230 LYS CE C N N 231 LYS NZ N N N 232 LYS OXT O N N 233 LYS H H N N 234 LYS H2 H N N 235 LYS HA H N N 236 LYS HB2 H N N 237 LYS HB3 H N N 238 LYS HG2 H N N 239 LYS HG3 H N N 240 LYS HD2 H N N 241 LYS HD3 H N N 242 LYS HE2 H N N 243 LYS HE3 H N N 244 LYS HZ1 H N N 245 LYS HZ2 H N N 246 LYS HZ3 H N N 247 LYS HXT H N N 248 MET N N N N 249 MET CA C N S 250 MET C C N N 251 MET O O N N 252 MET CB C N N 253 MET CG C N N 254 MET SD S N N 255 MET CE C N N 256 MET OXT O N N 257 MET H H N N 258 MET H2 H N N 259 MET HA H N N 260 MET HB2 H N N 261 MET HB3 H N N 262 MET HG2 H N N 263 MET HG3 H N N 264 MET HE1 H N N 265 MET HE2 H N N 266 MET HE3 H N N 267 MET HXT H N N 268 PHE N N N N 269 PHE CA C N S 270 PHE C C N N 271 PHE O O N N 272 PHE CB C N N 273 PHE CG C Y N 274 PHE CD1 C Y N 275 PHE CD2 C Y N 276 PHE CE1 C Y N 277 PHE CE2 C Y N 278 PHE CZ C Y N 279 PHE OXT O N N 280 PHE H H N N 281 PHE H2 H N N 282 PHE HA H N N 283 PHE HB2 H N N 284 PHE HB3 H N N 285 PHE HD1 H N N 286 PHE HD2 H N N 287 PHE HE1 H N N 288 PHE HE2 H N N 289 PHE HZ H N N 290 PHE HXT H N N 291 PRO N N N N 292 PRO CA C N S 293 PRO C C N N 294 PRO O O N N 295 PRO CB C N N 296 PRO CG C N N 297 PRO CD C N N 298 PRO OXT O N N 299 PRO H H N N 300 PRO HA H N N 301 PRO HB2 H N N 302 PRO HB3 H N N 303 PRO HG2 H N N 304 PRO HG3 H N N 305 PRO HD2 H N N 306 PRO HD3 H N N 307 PRO HXT H N N 308 SER N N N N 309 SER CA C N S 310 SER C C N N 311 SER O O N N 312 SER CB C N N 313 SER OG O N N 314 SER OXT O N N 315 SER H H N N 316 SER H2 H N N 317 SER HA H N N 318 SER HB2 H N N 319 SER HB3 H N N 320 SER HG H N N 321 SER HXT H N N 322 THR N N N N 323 THR CA C N S 324 THR C C N N 325 THR O O N N 326 THR CB C N R 327 THR OG1 O N N 328 THR CG2 C N N 329 THR OXT O N N 330 THR H H N N 331 THR H2 H N N 332 THR HA H N N 333 THR HB H N N 334 THR HG1 H N N 335 THR HG21 H N N 336 THR HG22 H N N 337 THR HG23 H N N 338 THR HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FMT C O1 doub N N 83 FMT C O2 sing N N 84 FMT C H sing N N 85 FMT O2 HO2 sing N N 86 GLN N CA sing N N 87 GLN N H sing N N 88 GLN N H2 sing N N 89 GLN CA C sing N N 90 GLN CA CB sing N N 91 GLN CA HA sing N N 92 GLN C O doub N N 93 GLN C OXT sing N N 94 GLN CB CG sing N N 95 GLN CB HB2 sing N N 96 GLN CB HB3 sing N N 97 GLN CG CD sing N N 98 GLN CG HG2 sing N N 99 GLN CG HG3 sing N N 100 GLN CD OE1 doub N N 101 GLN CD NE2 sing N N 102 GLN NE2 HE21 sing N N 103 GLN NE2 HE22 sing N N 104 GLN OXT HXT sing N N 105 GLU N CA sing N N 106 GLU N H sing N N 107 GLU N H2 sing N N 108 GLU CA C sing N N 109 GLU CA CB sing N N 110 GLU CA HA sing N N 111 GLU C O doub N N 112 GLU C OXT sing N N 113 GLU CB CG sing N N 114 GLU CB HB2 sing N N 115 GLU CB HB3 sing N N 116 GLU CG CD sing N N 117 GLU CG HG2 sing N N 118 GLU CG HG3 sing N N 119 GLU CD OE1 doub N N 120 GLU CD OE2 sing N N 121 GLU OE2 HE2 sing N N 122 GLU OXT HXT sing N N 123 GLY N CA sing N N 124 GLY N H sing N N 125 GLY N H2 sing N N 126 GLY CA C sing N N 127 GLY CA HA2 sing N N 128 GLY CA HA3 sing N N 129 GLY C O doub N N 130 GLY C OXT sing N N 131 GLY OXT HXT sing N N 132 GOL C1 O1 sing N N 133 GOL C1 C2 sing N N 134 GOL C1 H11 sing N N 135 GOL C1 H12 sing N N 136 GOL O1 HO1 sing N N 137 GOL C2 O2 sing N N 138 GOL C2 C3 sing N N 139 GOL C2 H2 sing N N 140 GOL O2 HO2 sing N N 141 GOL C3 O3 sing N N 142 GOL C3 H31 sing N N 143 GOL C3 H32 sing N N 144 GOL O3 HO3 sing N N 145 HIS N CA sing N N 146 HIS N H sing N N 147 HIS N H2 sing N N 148 HIS CA C sing N N 149 HIS CA CB sing N N 150 HIS CA HA sing N N 151 HIS C O doub N N 152 HIS C OXT sing N N 153 HIS CB CG sing N N 154 HIS CB HB2 sing N N 155 HIS CB HB3 sing N N 156 HIS CG ND1 sing Y N 157 HIS CG CD2 doub Y N 158 HIS ND1 CE1 doub Y N 159 HIS ND1 HD1 sing N N 160 HIS CD2 NE2 sing Y N 161 HIS CD2 HD2 sing N N 162 HIS CE1 NE2 sing Y N 163 HIS CE1 HE1 sing N N 164 HIS NE2 HE2 sing N N 165 HIS OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PRO N CA sing N N 277 PRO N CD sing N N 278 PRO N H sing N N 279 PRO CA C sing N N 280 PRO CA CB sing N N 281 PRO CA HA sing N N 282 PRO C O doub N N 283 PRO C OXT sing N N 284 PRO CB CG sing N N 285 PRO CB HB2 sing N N 286 PRO CB HB3 sing N N 287 PRO CG CD sing N N 288 PRO CG HG2 sing N N 289 PRO CG HG3 sing N N 290 PRO CD HD2 sing N N 291 PRO CD HD3 sing N N 292 PRO OXT HXT sing N N 293 SER N CA sing N N 294 SER N H sing N N 295 SER N H2 sing N N 296 SER CA C sing N N 297 SER CA CB sing N N 298 SER CA HA sing N N 299 SER C O doub N N 300 SER C OXT sing N N 301 SER CB OG sing N N 302 SER CB HB2 sing N N 303 SER CB HB3 sing N N 304 SER OG HG sing N N 305 SER OXT HXT sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'NIKR FROM HELICOBACTER PYLORI SOLVED BY SAD METHOD USING MERCURY DERIVATIVE.' # _atom_sites.entry_id 2CA9 _atom_sites.fract_transf_matrix[1][1] 0.014074 _atom_sites.fract_transf_matrix[1][2] 0.008125 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016251 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004366 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_