HEADER ELECTRON TRANSPORT (HEME PROTEIN) 27-AUG-85 2CCY TITLE STRUCTURE OF FERRICYTOCHROME C(PRIME) FROM RHODOSPIRILLUM MOLISCHIANUM TITLE 2 AT 1.67 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEOSPIRILLUM MOLISCHIANUM; SOURCE 3 ORGANISM_TAXID: 1083 KEYWDS ELECTRON TRANSPORT (HEME PROTEIN) EXPDTA X-RAY DIFFRACTION AUTHOR B.C.FINZEL,P.C.WEBER,K.D.HARDMAN,F.R.SALEMME REVDAT 8 16-OCT-24 2CCY 1 REMARK REVDAT 7 03-MAR-21 2CCY 1 COMPND REMARK HET HETNAM REVDAT 7 2 1 HETSYN FORMUL LINK ATOM REVDAT 6 29-NOV-17 2CCY 1 HELIX REVDAT 5 24-FEB-09 2CCY 1 VERSN REVDAT 4 01-APR-03 2CCY 1 JRNL REVDAT 3 16-JUL-88 2CCY 3 ATOM REVDAT 2 25-APR-86 2CCY 1 JRNL REVDAT 1 21-JAN-86 2CCY 0 SPRSDE 21-JAN-86 2CCY 1CCY JRNL AUTH B.C.FINZEL,P.C.WEBER,K.D.HARDMAN,F.R.SALEMME JRNL TITL STRUCTURE OF FERRICYTOCHROME C' FROM RHODOSPIRILLUM JRNL TITL 2 MOLISCHIANUM AT 1.67 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 186 627 1985 JRNL REFN ISSN 0022-2836 JRNL PMID 3005592 JRNL DOI 10.1016/0022-2836(85)90135-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.C.FINZEL,F.R.SALEMME REMARK 1 TITL LATTICE MOBILITY AND ANOMALOUS TEMPERATURE FACTOR BEHAVIOUR REMARK 1 TITL 2 IN CYTOCHROME C(PRIME) REMARK 1 REF NATURE V. 315 686 1985 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.C.WEBER,A.HOWARD,N.H.XUONG,F.R.SALEMME REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURE OF RHODOSPIRILLUM MOLISCHIANUM REMARK 1 TITL 2 FERRICYTOCHROME C(PRIME) AT 2.5 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 153 399 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.C.WEBER REMARK 1 TITL CORRELATIONS BETWEEN STRUCTURAL AND SPECTROSCOPIC PROPERTIES REMARK 1 TITL 2 OF THE HIGH-SPIN HEME PROTEIN CYTOCHROME C(PRIME) REMARK 1 REF BIOCHEMISTRY V. 21 5116 1982 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.C.WEBER,F.R.SALEMME,F.S.MATHEWS,P.H.BETHGE REMARK 1 TITL ON THE EVOLUTIONARY RELATIONSHIP OF THE 4-ALPHA-HELICAL HEME REMARK 1 TITL 2 PROTEINS. THE COMPARISON OF CYTOCHROME B562 AND CYTOCHROME REMARK 1 TITL 3 C(PRIME) REMARK 1 REF J.BIOL.CHEM. V. 256 7702 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.C.WEBER,F.R.SALEMME REMARK 1 TITL STRUCTURAL AND FUNCTIONAL DIVERSITY IN 4-ALPHA-HELICAL REMARK 1 TITL 2 PROTEINS REMARK 1 REF NATURE V. 287 82 1980 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 6 REMARK 1 AUTH P.C.WEBER,R.G.BARTSCH,M.A.CUSANOVICH,R.C.HAMLIN,A.HOWARD, REMARK 1 AUTH 2 S.R.JORDAN,M.D.KAMEN,T.E.MEYER,D.W.WEATHERFORD,N.H.XUONG, REMARK 1 AUTH 3 F.R.SALEMME REMARK 1 TITL STRUCTURE OF CYTOCHROME C(PRIME). A DIMERIC, HIGH-SPIN HAEM REMARK 1 TITL 2 PROTEIN REMARK 1 REF NATURE V. 286 302 1980 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 7 REMARK 1 AUTH P.WEBER,F.R.SALEMME REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA FOR CYTOCHROMES C(PRIME) REMARK 1 TITL 2 OF RHODOPSEUDOMONAS CAPSULATA AND RHODOSPIRILLUM REMARK 1 TITL 3 MOLISCHIANUM REMARK 1 REF J.MOL.BIOL. V. 117 815 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLN B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 123 CD GLU A 123 OE2 0.085 REMARK 500 ARG B 12 CZ ARG B 12 NH2 0.086 REMARK 500 GLY B 57 N GLY B 57 CA 0.136 REMARK 500 SER B 79 CA SER B 79 CB 0.098 REMARK 500 TRP B 86 CE2 TRP B 86 CD2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES REMARK 500 GLN A 17 CA - C - O ANGL. DEV. = -12.6 DEGREES REMARK 500 GLN A 17 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU A 19 CB - CG - CD1 ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 39 CB - CG - OD1 ANGL. DEV. = 12.7 DEGREES REMARK 500 GLN A 42 O - C - N ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 GLU A 45 O - C - N ANGL. DEV. = 11.1 DEGREES REMARK 500 ALA A 54 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 TRP A 58 CD2 - CE3 - CZ3 ANGL. DEV. = -8.2 DEGREES REMARK 500 TRP A 58 CE3 - CZ3 - CH2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ALA A 59 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 ALA A 64 N - CA - CB ANGL. DEV. = -8.6 DEGREES REMARK 500 GLU A 81 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 PHE A 82 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 LEU A 96 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ALA A 97 O - C - N ANGL. DEV. = 17.1 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ALA A 106 O - C - N ANGL. DEV. = 10.4 DEGREES REMARK 500 LYS A 116 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 GLU A 124 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 GLY B 14 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP B 35 OD1 - CG - OD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP B 35 CB - CG - OD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 GLN B 42 CB - CG - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 ALA B 51 CB - CA - C ANGL. DEV. = 10.8 DEGREES REMARK 500 GLY B 57 C - N - CA ANGL. DEV. = -12.7 DEGREES REMARK 500 GLU B 63 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 GLU B 73 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 GLU B 73 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 SER B 79 N - CA - CB ANGL. DEV. = -10.7 DEGREES REMARK 500 PHE B 82 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU B 83 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 TRP B 86 CE2 - CD2 - CE3 ANGL. DEV. = 8.4 DEGREES REMARK 500 TRP B 86 CG - CD2 - CE3 ANGL. DEV. = -8.2 DEGREES REMARK 500 TRP B 86 CE3 - CZ3 - CH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP B 86 CZ3 - CH2 - CZ2 ANGL. DEV. = 12.5 DEGREES REMARK 500 TRP B 86 CH2 - CZ2 - CE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 THR B 94 CA - CB - CG2 ANGL. DEV. = -13.1 DEGREES REMARK 500 ALA B 106 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 VAL B 117 CA - CB - CG1 ANGL. DEV. = -9.7 DEGREES REMARK 500 GLU B 123 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 GLU B 124 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 136.26 117.62 REMARK 500 SER B 3 108.24 77.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 12 0.09 SIDE CHAIN REMARK 500 ARG A 43 0.10 SIDE CHAIN REMARK 500 ARG B 43 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 13 10.36 REMARK 500 PRO B 55 -11.56 REMARK 500 LYS B 116 10.34 REMARK 500 ALA B 120 13.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 202 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 252 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 330 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH A 350 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 122 NE2 REMARK 620 2 HEC A 129 NA 98.3 REMARK 620 3 HEC A 129 NB 90.7 89.2 REMARK 620 4 HEC A 129 NC 93.7 167.7 88.0 REMARK 620 5 HEC A 129 ND 102.0 92.2 166.9 87.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 122 NE2 REMARK 620 2 HEC B 129 NA 101.8 REMARK 620 3 HEC B 129 NB 103.3 90.6 REMARK 620 4 HEC B 129 NC 96.9 161.1 87.5 REMARK 620 5 HEC B 129 ND 94.2 86.4 162.5 89.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 129 DBREF 2CCY A 1 128 UNP P00152 CYCP_RHOMO 1 128 DBREF 2CCY B 1 128 UNP P00152 CYCP_RHOMO 1 128 SEQRES 1 A 128 GLN GLN SER LYS PRO GLU ASP LEU LEU LYS LEU ARG GLN SEQRES 2 A 128 GLY LEU MET GLN THR LEU LYS SER GLN TRP VAL PRO ILE SEQRES 3 A 128 ALA GLY PHE ALA ALA GLY LYS ALA ASP LEU PRO ALA ASP SEQRES 4 A 128 ALA ALA GLN ARG ALA GLU ASN MET ALA MET VAL ALA LYS SEQRES 5 A 128 LEU ALA PRO ILE GLY TRP ALA LYS GLY THR GLU ALA LEU SEQRES 6 A 128 PRO ASN GLY GLU THR LYS PRO GLU ALA PHE GLY SER LYS SEQRES 7 A 128 SER ALA GLU PHE LEU GLU GLY TRP LYS ALA LEU ALA THR SEQRES 8 A 128 GLU SER THR LYS LEU ALA ALA ALA ALA LYS ALA GLY PRO SEQRES 9 A 128 ASP ALA LEU LYS ALA GLN ALA ALA ALA THR GLY LYS VAL SEQRES 10 A 128 CYS LYS ALA CYS HIS GLU GLU PHE LYS GLN ASP SEQRES 1 B 128 GLN GLN SER LYS PRO GLU ASP LEU LEU LYS LEU ARG GLN SEQRES 2 B 128 GLY LEU MET GLN THR LEU LYS SER GLN TRP VAL PRO ILE SEQRES 3 B 128 ALA GLY PHE ALA ALA GLY LYS ALA ASP LEU PRO ALA ASP SEQRES 4 B 128 ALA ALA GLN ARG ALA GLU ASN MET ALA MET VAL ALA LYS SEQRES 5 B 128 LEU ALA PRO ILE GLY TRP ALA LYS GLY THR GLU ALA LEU SEQRES 6 B 128 PRO ASN GLY GLU THR LYS PRO GLU ALA PHE GLY SER LYS SEQRES 7 B 128 SER ALA GLU PHE LEU GLU GLY TRP LYS ALA LEU ALA THR SEQRES 8 B 128 GLU SER THR LYS LEU ALA ALA ALA ALA LYS ALA GLY PRO SEQRES 9 B 128 ASP ALA LEU LYS ALA GLN ALA ALA ALA THR GLY LYS VAL SEQRES 10 B 128 CYS LYS ALA CYS HIS GLU GLU PHE LYS GLN ASP HET HEC A 129 43 HET HEC B 129 43 HETNAM HEC HEME C FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 5 HOH *194(H2 O) HELIX 1 AA PRO A 5 ALA A 30 1BENT AT PRO A 25 26 HELIX 2 BA ALA A 40 LEU A 53 1 14 HELIX 3 BPA ALA A 54 TRP A 58 5 5 HELIX 4 CMA PRO A 72 ALA A 74 5 3 HELIX 5 CA SER A 79 ALA A 102 1 24 HELIX 6 DA PRO A 104 PHE A 125 1RESIDS 114-117 IN 3/10 CONFIG 22 HELIX 7 AB PRO B 5 ALA B 30 1BENT AT PRO B 25 26 HELIX 8 BB ALA B 40 LEU B 53 1 14 HELIX 9 BPB ALA B 54 TRP B 58 5 5 HELIX 10 CMB PRO B 72 ALA B 74 5 3 HELIX 11 CB SER B 79 ALA B 102 1 24 HELIX 12 DB PRO B 104 PHE B 125 1RESIDS 114-117 IN 3/10 CONFIG 22 LINK SG CYS A 118 CAB HEC A 129 1555 1555 1.78 LINK SG CYS A 121 CAC HEC A 129 1555 1555 1.89 LINK SG CYS B 118 CAB HEC B 129 1555 1555 1.76 LINK SG CYS B 121 CAC HEC B 129 1555 1555 1.88 LINK NE2 HIS A 122 FE HEC A 129 1555 1555 2.02 LINK NE2 HIS B 122 FE HEC B 129 1555 1555 1.97 SITE 1 AC1 16 ARG A 12 GLN A 13 GLN A 17 LEU A 19 SITE 2 AC1 16 TRP A 23 GLU A 69 THR A 70 PHE A 82 SITE 3 AC1 16 TRP A 86 CYS A 118 CYS A 121 HIS A 122 SITE 4 AC1 16 LYS A 126 HOH A 401 HOH A 427 LYS B 10 SITE 1 AC2 16 LYS A 10 ARG B 12 GLN B 13 MET B 16 SITE 2 AC2 16 GLN B 17 LEU B 19 TRP B 23 GLU B 69 SITE 3 AC2 16 THR B 70 TRP B 86 CYS B 118 CYS B 121 SITE 4 AC2 16 HIS B 122 LYS B 126 HOH B 501 HOH B 527 CRYST1 56.580 72.330 75.440 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013256 0.00000 MTRIX1 1 0.467300 0.293800 -0.833900 14.60000 1 MTRIX2 1 0.302200 -0.939400 -0.161600 27.06000 1 MTRIX3 1 -0.830900 -0.176500 -0.527700 35.31000 1