HEADER OXIDOREDUCTASE 23-JAN-06 2CD9 TITLE SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 - APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUCOSE 1-DEHYDROGENASE, DHG-1; COMPND 5 EC: 1.1.1.47; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PREC7 KEYWDS OXIDOREDUCTASE, GLUCOSE DEHYDROGENASE, MEDIUM CHAIN DEHYDROGENASE KEYWDS 2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR C.C.MILBURN,H.J.LAMBLE,A.THEODOSSIS,D.W.HOUGH,M.J.DANSON,G.L.TAYLOR REVDAT 5 01-MAY-24 2CD9 1 LINK REVDAT 4 13-JUL-11 2CD9 1 VERSN REVDAT 3 24-FEB-09 2CD9 1 VERSN REVDAT 2 24-MAY-06 2CD9 1 JRNL REVDAT 1 22-MAR-06 2CD9 0 JRNL AUTH C.C.MILBURN,H.J.LAMBLE,A.THEODOSSIS,S.D.BULL,D.W.HOUGH, JRNL AUTH 2 M.J.DANSON,G.L.TAYLOR JRNL TITL THE STRUCTURAL BASIS OF SUBSTRATE PROMISCUITY IN GLUCOSE JRNL TITL 2 DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS JRNL TITL 3 SOLFATARICUS. JRNL REF J.BIOL.CHEM. V. 281 14796 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16556607 JRNL DOI 10.1074/JBC.M601334200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 141.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 77521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3905 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 8.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 141.4 REMARK 3 REFLECTION IN BIN (WORKING SET) : 862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.1770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 669 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03900 REMARK 3 B22 (A**2) : 1.09200 REMARK 3 B33 (A**2) : -1.05300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.634 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5816 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7863 ; 1.509 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.063 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;39.984 ;24.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1078 ;13.610 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 897 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4266 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2893 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3976 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 601 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 104 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3696 ; 1.092 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5810 ; 1.486 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2426 ; 2.515 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2053 ; 3.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0950 13.9950 81.8870 REMARK 3 T TENSOR REMARK 3 T11: -.0063 T22: .0114 REMARK 3 T33: -.0582 T12: -.0038 REMARK 3 T13: .0213 T23: .0172 REMARK 3 L TENSOR REMARK 3 L11: .6575 L22: .9760 REMARK 3 L33: .5357 L12: .1147 REMARK 3 L13: -.1629 L23: -.1053 REMARK 3 S TENSOR REMARK 3 S11: .0088 S12: .0787 S13: .0235 REMARK 3 S21: -.1528 S22: .0088 S23: -.0887 REMARK 3 S31: -.0322 S32: .0089 S33: -.0176 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 187 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8390 13.2130 126.4350 REMARK 3 T TENSOR REMARK 3 T11: -.0094 T22: .0072 REMARK 3 T33: -.0602 T12: -.0045 REMARK 3 T13: .0313 T23: -.0186 REMARK 3 L TENSOR REMARK 3 L11: .7660 L22: 1.1792 REMARK 3 L33: .8373 L12: -.4253 REMARK 3 L13: -.1452 L23: -.0339 REMARK 3 S TENSOR REMARK 3 S11: -.0355 S12: -.0772 S13: .0362 REMARK 3 S21: .1856 S22: .0603 S23: .0952 REMARK 3 S31: -.0330 S32: -.0120 S33: -.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 186 REMARK 3 RESIDUE RANGE : A 301 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1360 20.1960 91.7870 REMARK 3 T TENSOR REMARK 3 T11: -.0164 T22: .0015 REMARK 3 T33: -.0352 T12: .0116 REMARK 3 T13: -.0028 T23: .0110 REMARK 3 L TENSOR REMARK 3 L11: .6301 L22: .3750 REMARK 3 L33: .2558 L12: -.0856 REMARK 3 L13: .2271 L23: -.0582 REMARK 3 S TENSOR REMARK 3 S11: -.0036 S12: -.0195 S13: .0187 REMARK 3 S21: -.0398 S22: .0133 S23: .0849 REMARK 3 S31: -.0423 S32: -.0289 S33: -.0097 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 186 REMARK 3 RESIDUE RANGE : B 301 B 366 REMARK 3 ORIGIN FOR THE GROUP (A): 48.1270 21.8190 116.5200 REMARK 3 T TENSOR REMARK 3 T11: -.0120 T22: .0054 REMARK 3 T33: -.0437 T12: -.0238 REMARK 3 T13: .0005 T23: -.0094 REMARK 3 L TENSOR REMARK 3 L11: .5717 L22: .5093 REMARK 3 L33: .2377 L12: .2407 REMARK 3 L13: .1714 L23: .0553 REMARK 3 S TENSOR REMARK 3 S11: .0120 S12: .0045 S13: .0182 REMARK 3 S21: .0565 S22: .0023 S23: -.0658 REMARK 3 S31: -.0466 S32: .0221 S33: -.0143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED LOOP DELETED FROM COORDINATES. FUNCTIONAL REMARK 3 TETRAMER CREATED BY APPLYING SYMMETRY OPERATOR TO ASYMMETRIC REMARK 3 UNIT. REMARK 4 REMARK 4 2CD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290027401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: THERMOPLASMA ACIDOPHILUM GDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % PEG, 0.1 M MES (PH 5.75), 3% REMARK 280 (V/V) PROPAN-2-OL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.25050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.25050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.50100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2150 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2185 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 54 REMARK 465 LEU A 55 REMARK 465 PRO A 56 REMARK 465 SER B 53 REMARK 465 THR B 54 REMARK 465 LEU B 55 REMARK 465 PRO B 56 REMARK 465 LYS B 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 325 O HOH A 2281 2.04 REMARK 500 OG1 THR B 325 O HOH A 2281 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 51 14.24 -65.43 REMARK 500 TYR A 76 -136.36 -124.36 REMARK 500 ILE A 117 -47.65 -134.19 REMARK 500 LYS A 119 -9.45 70.91 REMARK 500 THR A 189 -113.55 -107.97 REMARK 500 ASN A 259 53.11 -113.70 REMARK 500 ASN A 307 113.21 59.38 REMARK 500 ILE A 359 -65.58 -106.11 REMARK 500 HIS B 77 -116.11 45.76 REMARK 500 ILE B 117 -59.82 -133.99 REMARK 500 THR B 189 -114.40 -105.81 REMARK 500 ARG B 213 169.12 178.63 REMARK 500 ASN B 307 113.54 62.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 HIS A 66 NE2 107.7 REMARK 620 3 GLU A 67 OE2 109.0 122.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1368 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 113.4 REMARK 620 3 CYS A 99 SG 113.8 101.7 REMARK 620 4 CYS A 107 SG 108.1 116.3 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 39 SG REMARK 620 2 HIS B 66 NE2 109.2 REMARK 620 3 GLU B 67 OE2 108.5 123.3 REMARK 620 4 HOH B2352 O 124.2 98.3 93.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1368 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 93 SG REMARK 620 2 CYS B 96 SG 112.2 REMARK 620 3 CYS B 99 SG 113.3 102.8 REMARK 620 4 CYS B 107 SG 108.3 116.1 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1367 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 150 NE2 REMARK 620 2 HOH B2351 O 101.6 REMARK 620 3 HOH B2353 O 127.7 116.1 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1368 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CDA RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 IN COMPLEX WITH NADP REMARK 900 RELATED ID: 2CDB RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 IN COMPLEX WITH REMARK 900 NADP AND GLUCOSE REMARK 900 RELATED ID: 2CDC RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 IN COMPLEX WITH REMARK 900 NADP AND XYLOSE DBREF 2CD9 A 1 366 UNP O93715 O93715_SULSO 1 366 DBREF 2CD9 B 1 366 UNP O93715 O93715_SULSO 1 366 SEQRES 1 A 366 MET LYS ALA ILE ILE VAL LYS PRO PRO ASN ALA GLY VAL SEQRES 2 A 366 GLN VAL LYS ASP VAL ASP GLU LYS LYS LEU ASP SER TYR SEQRES 3 A 366 GLY LYS ILE LYS ILE ARG THR ILE TYR ASN GLY ILE CYS SEQRES 4 A 366 GLY THR ASP ARG GLU ILE VAL ASN GLY LYS LEU THR LEU SEQRES 5 A 366 SER THR LEU PRO LYS GLY LYS ASP PHE LEU VAL LEU GLY SEQRES 6 A 366 HIS GLU ALA ILE GLY VAL VAL GLU GLU SER TYR HIS GLY SEQRES 7 A 366 PHE SER GLN GLY ASP LEU VAL MET PRO VAL ASN ARG ARG SEQRES 8 A 366 GLY CYS GLY ILE CYS ARG ASN CYS LEU VAL GLY ARG PRO SEQRES 9 A 366 ASP PHE CYS GLU THR GLY GLU PHE GLY GLU ALA GLY ILE SEQRES 10 A 366 HIS LYS MET ASP GLY PHE MET ARG GLU TRP TRP TYR ASP SEQRES 11 A 366 ASP PRO LYS TYR LEU VAL LYS ILE PRO LYS SER ILE GLU SEQRES 12 A 366 ASP ILE GLY ILE LEU ALA GLN PRO LEU ALA ASP ILE GLU SEQRES 13 A 366 LYS SER ILE GLU GLU ILE LEU GLU VAL GLN LYS ARG VAL SEQRES 14 A 366 PRO VAL TRP THR CYS ASP ASP GLY THR LEU ASN CYS ARG SEQRES 15 A 366 LYS VAL LEU VAL VAL GLY THR GLY PRO ILE GLY VAL LEU SEQRES 16 A 366 PHE THR LEU LEU PHE ARG THR TYR GLY LEU GLU VAL TRP SEQRES 17 A 366 MET ALA ASN ARG ARG GLU PRO THR GLU VAL GLU GLN THR SEQRES 18 A 366 VAL ILE GLU GLU THR LYS THR ASN TYR TYR ASN SER SER SEQRES 19 A 366 ASN GLY TYR ASP LYS LEU LYS ASP SER VAL GLY LYS PHE SEQRES 20 A 366 ASP VAL ILE ILE ASP ALA THR GLY ALA ASP VAL ASN ILE SEQRES 21 A 366 LEU GLY ASN VAL ILE PRO LEU LEU GLY ARG ASN GLY VAL SEQRES 22 A 366 LEU GLY LEU PHE GLY PHE SER THR SER GLY SER VAL PRO SEQRES 23 A 366 LEU ASP TYR LYS THR LEU GLN GLU ILE VAL HIS THR ASN SEQRES 24 A 366 LYS THR ILE ILE GLY LEU VAL ASN GLY GLN LYS PRO HIS SEQRES 25 A 366 PHE GLN GLN ALA VAL VAL HIS LEU ALA SER TRP LYS THR SEQRES 26 A 366 LEU TYR PRO LYS ALA ALA LYS MET LEU ILE THR LYS THR SEQRES 27 A 366 VAL SER ILE ASN ASP GLU LYS GLU LEU LEU LYS VAL LEU SEQRES 28 A 366 ARG GLU LYS GLU HIS GLY GLU ILE LYS ILE ARG ILE LEU SEQRES 29 A 366 TRP GLU SEQRES 1 B 366 MET LYS ALA ILE ILE VAL LYS PRO PRO ASN ALA GLY VAL SEQRES 2 B 366 GLN VAL LYS ASP VAL ASP GLU LYS LYS LEU ASP SER TYR SEQRES 3 B 366 GLY LYS ILE LYS ILE ARG THR ILE TYR ASN GLY ILE CYS SEQRES 4 B 366 GLY THR ASP ARG GLU ILE VAL ASN GLY LYS LEU THR LEU SEQRES 5 B 366 SER THR LEU PRO LYS GLY LYS ASP PHE LEU VAL LEU GLY SEQRES 6 B 366 HIS GLU ALA ILE GLY VAL VAL GLU GLU SER TYR HIS GLY SEQRES 7 B 366 PHE SER GLN GLY ASP LEU VAL MET PRO VAL ASN ARG ARG SEQRES 8 B 366 GLY CYS GLY ILE CYS ARG ASN CYS LEU VAL GLY ARG PRO SEQRES 9 B 366 ASP PHE CYS GLU THR GLY GLU PHE GLY GLU ALA GLY ILE SEQRES 10 B 366 HIS LYS MET ASP GLY PHE MET ARG GLU TRP TRP TYR ASP SEQRES 11 B 366 ASP PRO LYS TYR LEU VAL LYS ILE PRO LYS SER ILE GLU SEQRES 12 B 366 ASP ILE GLY ILE LEU ALA GLN PRO LEU ALA ASP ILE GLU SEQRES 13 B 366 LYS SER ILE GLU GLU ILE LEU GLU VAL GLN LYS ARG VAL SEQRES 14 B 366 PRO VAL TRP THR CYS ASP ASP GLY THR LEU ASN CYS ARG SEQRES 15 B 366 LYS VAL LEU VAL VAL GLY THR GLY PRO ILE GLY VAL LEU SEQRES 16 B 366 PHE THR LEU LEU PHE ARG THR TYR GLY LEU GLU VAL TRP SEQRES 17 B 366 MET ALA ASN ARG ARG GLU PRO THR GLU VAL GLU GLN THR SEQRES 18 B 366 VAL ILE GLU GLU THR LYS THR ASN TYR TYR ASN SER SER SEQRES 19 B 366 ASN GLY TYR ASP LYS LEU LYS ASP SER VAL GLY LYS PHE SEQRES 20 B 366 ASP VAL ILE ILE ASP ALA THR GLY ALA ASP VAL ASN ILE SEQRES 21 B 366 LEU GLY ASN VAL ILE PRO LEU LEU GLY ARG ASN GLY VAL SEQRES 22 B 366 LEU GLY LEU PHE GLY PHE SER THR SER GLY SER VAL PRO SEQRES 23 B 366 LEU ASP TYR LYS THR LEU GLN GLU ILE VAL HIS THR ASN SEQRES 24 B 366 LYS THR ILE ILE GLY LEU VAL ASN GLY GLN LYS PRO HIS SEQRES 25 B 366 PHE GLN GLN ALA VAL VAL HIS LEU ALA SER TRP LYS THR SEQRES 26 B 366 LEU TYR PRO LYS ALA ALA LYS MET LEU ILE THR LYS THR SEQRES 27 B 366 VAL SER ILE ASN ASP GLU LYS GLU LEU LEU LYS VAL LEU SEQRES 28 B 366 ARG GLU LYS GLU HIS GLY GLU ILE LYS ILE ARG ILE LEU SEQRES 29 B 366 TRP GLU HET ZN A1367 2 HET ZN A1368 1 HET ZN B1367 2 HET ZN B1368 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *669(H2 O) HELIX 1 1 ASP A 19 LEU A 23 5 5 HELIX 2 2 CYS A 39 ASN A 47 1 9 HELIX 3 3 CYS A 96 VAL A 101 1 6 HELIX 4 4 ARG A 103 CYS A 107 5 5 HELIX 5 5 ASP A 131 LYS A 133 5 3 HELIX 6 6 PRO A 139 GLU A 143 5 5 HELIX 7 7 ILE A 145 ILE A 147 5 3 HELIX 8 8 LEU A 148 GLN A 166 1 19 HELIX 9 9 LYS A 167 VAL A 169 5 3 HELIX 10 10 THR A 189 TYR A 203 1 15 HELIX 11 11 THR A 216 LYS A 227 1 12 HELIX 12 12 TYR A 237 GLY A 245 1 9 HELIX 13 13 ASN A 259 ILE A 265 1 7 HELIX 14 14 ASP A 288 THR A 298 1 11 HELIX 15 15 GLN A 309 TYR A 327 1 19 HELIX 16 16 TYR A 327 LYS A 332 1 6 HELIX 17 17 ASP A 343 GLU A 353 1 11 HELIX 18 18 ASP B 19 LEU B 23 5 5 HELIX 19 19 CYS B 39 ASN B 47 1 9 HELIX 20 20 CYS B 96 VAL B 101 1 6 HELIX 21 21 ARG B 103 CYS B 107 5 5 HELIX 22 22 ASP B 131 LYS B 133 5 3 HELIX 23 23 PRO B 139 GLU B 143 5 5 HELIX 24 24 ILE B 145 ILE B 147 5 3 HELIX 25 25 LEU B 148 GLN B 166 1 19 HELIX 26 26 LYS B 167 VAL B 169 5 3 HELIX 27 27 THR B 189 TYR B 203 1 15 HELIX 28 28 THR B 216 LYS B 227 1 12 HELIX 29 29 TYR B 237 GLY B 245 1 9 HELIX 30 30 ASN B 259 ILE B 265 1 7 HELIX 31 31 TYR B 289 THR B 298 1 10 HELIX 32 32 GLN B 309 TYR B 327 1 19 HELIX 33 33 TYR B 327 LYS B 332 1 6 HELIX 34 34 ASP B 343 GLU B 353 1 11 SHEET 1 AA 3 ASN A 10 ASP A 17 0 SHEET 2 AA 3 LYS A 2 LYS A 7 -1 O ALA A 3 N LYS A 16 SHEET 3 AA 3 LEU A 62 VAL A 63 -1 O LEU A 62 N VAL A 6 SHEET 1 AB 5 TRP A 127 ASP A 130 0 SHEET 2 AB 5 ILE A 29 ILE A 38 -1 O ILE A 29 N ASP A 130 SHEET 3 AB 5 GLU A 67 VAL A 72 -1 O GLU A 67 N GLY A 37 SHEET 4 AB 5 LEU A 84 PRO A 87 -1 O VAL A 85 N GLY A 70 SHEET 5 AB 5 LEU A 135 ILE A 138 -1 O VAL A 136 N MET A 86 SHEET 1 AC 4 TRP A 127 ASP A 130 0 SHEET 2 AC 4 ILE A 29 ILE A 38 -1 O ILE A 29 N ASP A 130 SHEET 3 AC 4 LYS A 360 LEU A 364 -1 O ILE A 361 N ILE A 38 SHEET 4 AC 4 ILE A 335 SER A 340 1 N THR A 336 O LYS A 360 SHEET 1 AD 2 ARG A 90 ARG A 91 0 SHEET 2 AD 2 GLY A 113 GLU A 114 -1 O GLY A 113 N ARG A 91 SHEET 1 AE 6 ASN A 229 ASN A 232 0 SHEET 2 AE 6 GLU A 206 ASN A 211 1 O VAL A 207 N ASN A 229 SHEET 3 AE 6 LYS A 183 VAL A 187 1 O VAL A 184 N TRP A 208 SHEET 4 AE 6 PHE A 247 ASP A 252 1 N ASP A 248 O LYS A 183 SHEET 5 AE 6 LEU A 268 LEU A 276 1 N GLY A 269 O PHE A 247 SHEET 6 AE 6 THR A 301 GLY A 304 1 O THR A 301 N LEU A 274 SHEET 1 BA 3 GLN B 14 ASP B 17 0 SHEET 2 BA 3 LYS B 2 VAL B 6 -1 O ALA B 3 N LYS B 16 SHEET 3 BA 3 LEU B 62 VAL B 63 -1 O LEU B 62 N VAL B 6 SHEET 1 BB 5 TRP B 127 ASP B 130 0 SHEET 2 BB 5 ILE B 29 ILE B 38 -1 O ILE B 29 N ASP B 130 SHEET 3 BB 5 GLU B 67 VAL B 72 -1 O GLU B 67 N GLY B 37 SHEET 4 BB 5 LEU B 84 PRO B 87 -1 O VAL B 85 N GLY B 70 SHEET 5 BB 5 LEU B 135 ILE B 138 -1 O VAL B 136 N MET B 86 SHEET 1 BC 4 TRP B 127 ASP B 130 0 SHEET 2 BC 4 ILE B 29 ILE B 38 -1 O ILE B 29 N ASP B 130 SHEET 3 BC 4 LYS B 360 LEU B 364 -1 O ILE B 361 N ILE B 38 SHEET 4 BC 4 ILE B 335 SER B 340 1 N THR B 336 O LYS B 360 SHEET 1 BD 2 ARG B 90 ARG B 91 0 SHEET 2 BD 2 GLY B 113 GLU B 114 -1 O GLY B 113 N ARG B 91 SHEET 1 BE 6 ASN B 229 ASN B 232 0 SHEET 2 BE 6 GLU B 206 ASN B 211 1 O VAL B 207 N ASN B 229 SHEET 3 BE 6 LYS B 183 VAL B 187 1 O VAL B 184 N TRP B 208 SHEET 4 BE 6 PHE B 247 ASP B 252 1 N ASP B 248 O LYS B 183 SHEET 5 BE 6 LEU B 268 LEU B 276 1 N GLY B 269 O PHE B 247 SHEET 6 BE 6 THR B 301 GLY B 304 1 O THR B 301 N LEU B 274 SSBOND 1 CYS A 174 CYS A 181 1555 1555 2.02 SSBOND 2 CYS B 174 CYS B 181 1555 1555 2.02 LINK SG CYS A 39 ZN A ZN A1367 1555 1555 2.27 LINK NE2 HIS A 66 ZN A ZN A1367 1555 1555 2.06 LINK OE2 GLU A 67 ZN A ZN A1367 1555 1555 1.88 LINK SG CYS A 93 ZN ZN A1368 1555 1555 2.38 LINK SG CYS A 96 ZN ZN A1368 1555 1555 2.38 LINK SG CYS A 99 ZN ZN A1368 1555 1555 2.34 LINK SG CYS A 107 ZN ZN A1368 1555 1555 2.31 LINK NE2 GLN A 150 ZN B ZN A1367 1555 1555 2.36 LINK SG CYS B 39 ZN A ZN B1367 1555 1555 2.35 LINK NE2 HIS B 66 ZN A ZN B1367 1555 1555 2.02 LINK OE2 GLU B 67 ZN A ZN B1367 1555 1555 1.98 LINK SG CYS B 93 ZN ZN B1368 1555 1555 2.38 LINK SG CYS B 96 ZN ZN B1368 1555 1555 2.37 LINK SG CYS B 99 ZN ZN B1368 1555 1555 2.30 LINK SG CYS B 107 ZN ZN B1368 1555 1555 2.33 LINK NE2 GLN B 150 ZN B ZN B1367 1555 1555 2.74 LINK ZN B ZN B1367 O BHOH B2351 1555 1555 1.80 LINK ZN A ZN B1367 O AHOH B2352 1555 1555 1.95 LINK ZN B ZN B1367 O HOH B2353 1555 1555 2.32 CISPEP 1 PRO A 8 PRO A 9 0 5.96 CISPEP 2 PRO B 8 PRO B 9 0 -1.27 SITE 1 AC1 8 CYS A 39 HIS A 66 GLU A 67 GLN A 150 SITE 2 AC1 8 HOH A2142 HOH A2314 HOH A2315 HOH A2316 SITE 1 AC2 4 CYS A 93 CYS A 96 CYS A 99 CYS A 107 SITE 1 AC3 7 CYS B 39 HIS B 66 GLU B 67 GLN B 150 SITE 2 AC3 7 HOH B2351 HOH B2352 HOH B2353 SITE 1 AC4 4 CYS B 93 CYS B 96 CYS B 99 CYS B 107 CRYST1 68.501 90.310 138.941 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007197 0.00000