HEADER HYDROLASE 10-FEB-06 2CER TITLE BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH TITLE 2 PHENETHYL-SUBSTITUTED GLUCOIMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GENTIOBIASE, CELLOBIASE, BETA-D-GLUCOSIDE GLUCOHYDROLASE; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS GLYCOSIDE HYDROLASE, INHIBITOR, TRANSITION STATE MIMIC, FAMILY 1, KEYWDS 2 GLUCOIMIDAZOLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.GLOSTER,S.ROBERTS,M.MORACCI,A.VASELLA,G.J.DAVIES REVDAT 4 13-DEC-23 2CER 1 REMARK REVDAT 3 24-FEB-09 2CER 1 VERSN REVDAT 2 04-OCT-06 2CER 1 JRNL REVDAT 1 27-SEP-06 2CER 0 JRNL AUTH T.M.GLOSTER,S.ROBERTS,G.PERUGINO,M.ROSSI,M.MORACCI,N.PANDAY, JRNL AUTH 2 M.TERINEK,A.VASELLA,G.J.DAVIES JRNL TITL STRUCTURAL, KINETIC, AND THERMODYNAMIC ANALYSIS OF JRNL TITL 2 GLUCOIMIDAZOLE-DERIVED GLYCOSIDASE INHIBITORS. JRNL REF BIOCHEMISTRY V. 45 11879 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 17002288 JRNL DOI 10.1021/BI060973X REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 145.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 62600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3321 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 741 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.12000 REMARK 3 B22 (A**2) : -2.12000 REMARK 3 B33 (A**2) : 3.18000 REMARK 3 B12 (A**2) : -1.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8555 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11674 ; 1.390 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1045 ; 6.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 453 ;36.426 ;22.980 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1339 ;16.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;19.485 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1153 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6869 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4116 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5663 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 627 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5091 ; 0.663 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8026 ; 1.148 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4092 ; 1.599 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3612 ; 2.393 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 489 5 REMARK 3 1 B 1 B 489 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1944 ; 0.17 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1970 ; 0.28 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1944 ; 1.15 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1970 ; 2.05 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1290024739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UWQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-14% PEG4K, 0.1 M SODIUM ACETATE, REMARK 280 0.2 M AMMONIUM ACETATE, 10-13 MG/ML PROTEIN, 25% ETHYLENE GLYCOL, REMARK 280 PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.95833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.91667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.91667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.95833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 120 CB CG CD OE1 OE2 REMARK 470 GLU A 331 CB CG CD OE1 OE2 REMARK 470 LYS A 332 CB CG CD CE NZ REMARK 470 LYS A 485 CD CE NZ REMARK 470 GLN B 96 CB CG CD OE1 NE2 REMARK 470 GLU B 100 CB CG CD OE1 OE2 REMARK 470 LYS B 255 CE NZ REMARK 470 ASN B 302 CB CG OD1 ND2 REMARK 470 LYS B 304 CD CE NZ REMARK 470 GLU B 331 CB CG CD OE1 OE2 REMARK 470 LYS B 332 CB CG CD CE NZ REMARK 470 LYS B 485 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 35.85 -94.31 REMARK 500 ASN A 97 53.36 35.80 REMARK 500 ASN A 97 61.48 26.00 REMARK 500 TRP A 151 -59.61 103.29 REMARK 500 VAL A 216 -59.08 -125.85 REMARK 500 SER A 228 114.68 -162.95 REMARK 500 ARG A 286 -63.44 -137.04 REMARK 500 LEU A 314 129.38 -174.36 REMARK 500 SER A 348 -144.00 -157.84 REMARK 500 PHE A 364 66.97 -152.94 REMARK 500 ASP A 392 80.87 -172.20 REMARK 500 TRP A 433 -129.48 51.64 REMARK 500 PHE B 88 78.79 -119.22 REMARK 500 ARG B 140 31.92 -93.50 REMARK 500 TRP B 151 -58.81 101.85 REMARK 500 VAL B 216 -58.11 -128.04 REMARK 500 SER B 228 112.02 -164.40 REMARK 500 ARG B 286 -63.51 -137.60 REMARK 500 ARG B 313 50.66 -91.42 REMARK 500 LYS B 332 46.67 -99.35 REMARK 500 SER B 348 -143.50 -154.02 REMARK 500 PHE B 364 65.93 -151.02 REMARK 500 ASP B 392 87.49 -166.40 REMARK 500 TRP B 433 -129.82 56.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2049 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A2116 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2132 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A2157 DISTANCE = 6.57 ANGSTROMS REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB" REMARK 700 AND "BB" IN EACH CHAIN ON SHEET RECORDS BELOW ARE ACTUALLY 9- REMARK 700 STRANDED BARRELS THAT ARE REPRESENTED BY A 10-STRANDED SHEET IN REMARK 700 WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGI A1490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGI B1490 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOW RELATED DB: PDB REMARK 900 BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS REMARK 900 RELATED ID: 1UWI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUTATED BETA-GLYCOSIDASE FROM SULFOLOBUS REMARK 900 SOLFATARICUS, WORKING AT MODERATE TEMPERATURE REMARK 900 RELATED ID: 1UWQ RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS REMARK 900 RELATED ID: 1UWR RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 900 COMPLEX WITH 2-DEOXY-2- FLUORO-GALACTOSE REMARK 900 RELATED ID: 1UWS RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 900 COMPLEX WITH 2-DEOXY-2- FLUORO-GLUCOSE REMARK 900 RELATED ID: 1UWT RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 900 COMPLEX WITH D- GALACTOHYDROXIMO-1,5-LACTAM REMARK 900 RELATED ID: 1UWU RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 900 COMPLEX WITH D- GLUCOHYDROXYIMO-1,5-LACTAM REMARK 900 RELATED ID: 2CEQ RELATED DB: PDB REMARK 900 BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH REMARK 900 GLUCOIMIDAZOLE DBREF 2CER A 1 489 UNP P22498 BGAL_SULSO 1 489 DBREF 2CER B 1 489 UNP P22498 BGAL_SULSO 1 489 SEQRES 1 A 489 MET TYR SER PHE PRO ASN SER PHE ARG PHE GLY TRP SER SEQRES 2 A 489 GLN ALA GLY PHE GLN SER GLU MET GLY THR PRO GLY SER SEQRES 3 A 489 GLU ASP PRO ASN THR ASP TRP TYR LYS TRP VAL HIS ASP SEQRES 4 A 489 PRO GLU ASN MET ALA ALA GLY LEU VAL SER GLY ASP LEU SEQRES 5 A 489 PRO GLU ASN GLY PRO GLY TYR TRP GLY ASN TYR LYS THR SEQRES 6 A 489 PHE HIS ASP ASN ALA GLN LYS MET GLY LEU LYS ILE ALA SEQRES 7 A 489 ARG LEU ASN VAL GLU TRP SER ARG ILE PHE PRO ASN PRO SEQRES 8 A 489 LEU PRO ARG PRO GLN ASN PHE ASP GLU SER LYS GLN ASP SEQRES 9 A 489 VAL THR GLU VAL GLU ILE ASN GLU ASN GLU LEU LYS ARG SEQRES 10 A 489 LEU ASP GLU TYR ALA ASN LYS ASP ALA LEU ASN HIS TYR SEQRES 11 A 489 ARG GLU ILE PHE LYS ASP LEU LYS SER ARG GLY LEU TYR SEQRES 12 A 489 PHE ILE LEU ASN MET TYR HIS TRP PRO LEU PRO LEU TRP SEQRES 13 A 489 LEU HIS ASP PRO ILE ARG VAL ARG ARG GLY ASP PHE THR SEQRES 14 A 489 GLY PRO SER GLY TRP LEU SER THR ARG THR VAL TYR GLU SEQRES 15 A 489 PHE ALA ARG PHE SER ALA TYR ILE ALA TRP LYS PHE ASP SEQRES 16 A 489 ASP LEU VAL ASP GLU TYR SER THR MET ASN GLU PRO ASN SEQRES 17 A 489 VAL VAL GLY GLY LEU GLY TYR VAL GLY VAL LYS SER GLY SEQRES 18 A 489 PHE PRO PRO GLY TYR LEU SER PHE GLU LEU SER ARG ARG SEQRES 19 A 489 ALA MET TYR ASN ILE ILE GLN ALA HIS ALA ARG ALA TYR SEQRES 20 A 489 ASP GLY ILE LYS SER VAL SER LYS LYS PRO VAL GLY ILE SEQRES 21 A 489 ILE TYR ALA ASN SER SER PHE GLN PRO LEU THR ASP LYS SEQRES 22 A 489 ASP MET GLU ALA VAL GLU MET ALA GLU ASN ASP ASN ARG SEQRES 23 A 489 TRP TRP PHE PHE ASP ALA ILE ILE ARG GLY GLU ILE THR SEQRES 24 A 489 ARG GLY ASN GLU LYS ILE VAL ARG ASP ASP LEU LYS GLY SEQRES 25 A 489 ARG LEU ASP TRP ILE GLY VAL ASN TYR TYR THR ARG THR SEQRES 26 A 489 VAL VAL LYS ARG THR GLU LYS GLY TYR VAL SER LEU GLY SEQRES 27 A 489 GLY TYR GLY HIS GLY CYS GLU ARG ASN SER VAL SER LEU SEQRES 28 A 489 ALA GLY LEU PRO THR SER ASP PHE GLY TRP GLU PHE PHE SEQRES 29 A 489 PRO GLU GLY LEU TYR ASP VAL LEU THR LYS TYR TRP ASN SEQRES 30 A 489 ARG TYR HIS LEU TYR MET TYR VAL THR GLU ASN GLY ILE SEQRES 31 A 489 ALA ASP ASP ALA ASP TYR GLN ARG PRO TYR TYR LEU VAL SEQRES 32 A 489 SER HIS VAL TYR GLN VAL HIS ARG ALA ILE ASN SER GLY SEQRES 33 A 489 ALA ASP VAL ARG GLY TYR LEU HIS TRP SER LEU ALA ASP SEQRES 34 A 489 ASN TYR GLU TRP ALA SER GLY PHE SER MET ARG PHE GLY SEQRES 35 A 489 LEU LEU LYS VAL ASP TYR ASN THR LYS ARG LEU TYR TRP SEQRES 36 A 489 ARG PRO SER ALA LEU VAL TYR ARG GLU ILE ALA THR ASN SEQRES 37 A 489 GLY ALA ILE THR ASP GLU ILE GLU HIS LEU ASN SER VAL SEQRES 38 A 489 PRO PRO VAL LYS PRO LEU ARG HIS SEQRES 1 B 489 MET TYR SER PHE PRO ASN SER PHE ARG PHE GLY TRP SER SEQRES 2 B 489 GLN ALA GLY PHE GLN SER GLU MET GLY THR PRO GLY SER SEQRES 3 B 489 GLU ASP PRO ASN THR ASP TRP TYR LYS TRP VAL HIS ASP SEQRES 4 B 489 PRO GLU ASN MET ALA ALA GLY LEU VAL SER GLY ASP LEU SEQRES 5 B 489 PRO GLU ASN GLY PRO GLY TYR TRP GLY ASN TYR LYS THR SEQRES 6 B 489 PHE HIS ASP ASN ALA GLN LYS MET GLY LEU LYS ILE ALA SEQRES 7 B 489 ARG LEU ASN VAL GLU TRP SER ARG ILE PHE PRO ASN PRO SEQRES 8 B 489 LEU PRO ARG PRO GLN ASN PHE ASP GLU SER LYS GLN ASP SEQRES 9 B 489 VAL THR GLU VAL GLU ILE ASN GLU ASN GLU LEU LYS ARG SEQRES 10 B 489 LEU ASP GLU TYR ALA ASN LYS ASP ALA LEU ASN HIS TYR SEQRES 11 B 489 ARG GLU ILE PHE LYS ASP LEU LYS SER ARG GLY LEU TYR SEQRES 12 B 489 PHE ILE LEU ASN MET TYR HIS TRP PRO LEU PRO LEU TRP SEQRES 13 B 489 LEU HIS ASP PRO ILE ARG VAL ARG ARG GLY ASP PHE THR SEQRES 14 B 489 GLY PRO SER GLY TRP LEU SER THR ARG THR VAL TYR GLU SEQRES 15 B 489 PHE ALA ARG PHE SER ALA TYR ILE ALA TRP LYS PHE ASP SEQRES 16 B 489 ASP LEU VAL ASP GLU TYR SER THR MET ASN GLU PRO ASN SEQRES 17 B 489 VAL VAL GLY GLY LEU GLY TYR VAL GLY VAL LYS SER GLY SEQRES 18 B 489 PHE PRO PRO GLY TYR LEU SER PHE GLU LEU SER ARG ARG SEQRES 19 B 489 ALA MET TYR ASN ILE ILE GLN ALA HIS ALA ARG ALA TYR SEQRES 20 B 489 ASP GLY ILE LYS SER VAL SER LYS LYS PRO VAL GLY ILE SEQRES 21 B 489 ILE TYR ALA ASN SER SER PHE GLN PRO LEU THR ASP LYS SEQRES 22 B 489 ASP MET GLU ALA VAL GLU MET ALA GLU ASN ASP ASN ARG SEQRES 23 B 489 TRP TRP PHE PHE ASP ALA ILE ILE ARG GLY GLU ILE THR SEQRES 24 B 489 ARG GLY ASN GLU LYS ILE VAL ARG ASP ASP LEU LYS GLY SEQRES 25 B 489 ARG LEU ASP TRP ILE GLY VAL ASN TYR TYR THR ARG THR SEQRES 26 B 489 VAL VAL LYS ARG THR GLU LYS GLY TYR VAL SER LEU GLY SEQRES 27 B 489 GLY TYR GLY HIS GLY CYS GLU ARG ASN SER VAL SER LEU SEQRES 28 B 489 ALA GLY LEU PRO THR SER ASP PHE GLY TRP GLU PHE PHE SEQRES 29 B 489 PRO GLU GLY LEU TYR ASP VAL LEU THR LYS TYR TRP ASN SEQRES 30 B 489 ARG TYR HIS LEU TYR MET TYR VAL THR GLU ASN GLY ILE SEQRES 31 B 489 ALA ASP ASP ALA ASP TYR GLN ARG PRO TYR TYR LEU VAL SEQRES 32 B 489 SER HIS VAL TYR GLN VAL HIS ARG ALA ILE ASN SER GLY SEQRES 33 B 489 ALA ASP VAL ARG GLY TYR LEU HIS TRP SER LEU ALA ASP SEQRES 34 B 489 ASN TYR GLU TRP ALA SER GLY PHE SER MET ARG PHE GLY SEQRES 35 B 489 LEU LEU LYS VAL ASP TYR ASN THR LYS ARG LEU TYR TRP SEQRES 36 B 489 ARG PRO SER ALA LEU VAL TYR ARG GLU ILE ALA THR ASN SEQRES 37 B 489 GLY ALA ILE THR ASP GLU ILE GLU HIS LEU ASN SER VAL SEQRES 38 B 489 PRO PRO VAL LYS PRO LEU ARG HIS HET PGI A1490 29 HET ACT A1491 4 HET ACT A1492 4 HET PGI B1490 29 HET ACT B1491 4 HETNAM PGI (5R,6R,7S,8S)-5-(HYDROXYMETHYL)-2-(2-PHENYLETHYL)-1,5, HETNAM 2 PGI 6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL HETNAM ACT ACETATE ION FORMUL 3 PGI 2(C16 H21 N2 O4 1+) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 8 HOH *741(H2 O) HELIX 1 1 ALA A 15 GLU A 20 1 6 HELIX 2 2 THR A 31 ASP A 39 1 9 HELIX 3 3 ASP A 39 ALA A 45 1 7 HELIX 4 4 LEU A 52 GLY A 56 5 5 HELIX 5 5 GLY A 58 MET A 73 1 16 HELIX 6 6 GLU A 83 PHE A 88 1 6 HELIX 7 7 ASN A 111 GLU A 120 1 10 HELIX 8 8 ASN A 123 ARG A 140 1 18 HELIX 9 9 ASP A 159 ARG A 165 1 7 HELIX 10 10 GLY A 173 LEU A 175 5 3 HELIX 11 11 SER A 176 ASP A 195 1 20 HELIX 12 12 GLU A 206 VAL A 216 1 11 HELIX 13 13 GLY A 217 GLY A 221 5 5 HELIX 14 14 SER A 228 SER A 252 1 25 HELIX 15 15 ASP A 274 ARG A 286 1 13 HELIX 16 16 ARG A 286 GLY A 296 1 11 HELIX 17 17 PRO A 365 HIS A 380 1 16 HELIX 18 18 GLN A 397 SER A 415 1 19 HELIX 19 19 TRP A 433 SER A 435 5 3 HELIX 20 20 PHE A 437 MET A 439 5 3 HELIX 21 21 ARG A 456 GLY A 469 1 14 HELIX 22 22 THR A 472 ASN A 479 5 8 HELIX 23 23 ALA B 15 GLU B 20 1 6 HELIX 24 24 THR B 31 HIS B 38 1 8 HELIX 25 25 ASP B 39 ALA B 45 1 7 HELIX 26 26 LEU B 52 GLY B 56 5 5 HELIX 27 27 GLY B 58 MET B 73 1 16 HELIX 28 28 GLU B 83 PHE B 88 1 6 HELIX 29 29 ASN B 111 ASP B 119 1 9 HELIX 30 30 ASN B 123 ARG B 140 1 18 HELIX 31 31 ASP B 159 ARG B 165 1 7 HELIX 32 32 GLY B 173 LEU B 175 5 3 HELIX 33 33 SER B 176 ASP B 195 1 20 HELIX 34 34 GLU B 206 VAL B 216 1 11 HELIX 35 35 GLY B 217 GLY B 221 5 5 HELIX 36 36 SER B 228 SER B 254 1 27 HELIX 37 37 ASP B 274 ARG B 286 1 13 HELIX 38 38 ARG B 286 GLY B 296 1 11 HELIX 39 39 PRO B 365 HIS B 380 1 16 HELIX 40 40 GLN B 397 SER B 415 1 19 HELIX 41 41 TRP B 433 SER B 435 5 3 HELIX 42 42 PHE B 437 MET B 439 5 3 HELIX 43 43 ARG B 456 GLY B 469 1 14 HELIX 44 44 THR B 472 ASN B 479 5 8 SHEET 1 AA 2 TYR A 2 SER A 3 0 SHEET 2 AA 2 ALA A 470 ILE A 471 -1 O ILE A 471 N TYR A 2 SHEET 1 AB10 ARG A 9 SER A 13 0 SHEET 2 AB10 VAL A 419 HIS A 424 1 O ARG A 420 N ARG A 9 SHEET 3 AB10 MET A 383 GLU A 387 1 O MET A 383 N ARG A 420 SHEET 4 AB10 TRP A 316 ARG A 329 1 O ILE A 317 N TYR A 384 SHEET 5 AB10 VAL A 258 PRO A 269 1 O ILE A 260 N GLY A 318 SHEET 6 AB10 GLU A 200 ASN A 205 1 O TYR A 201 N GLY A 259 SHEET 7 AB10 TYR A 143 TYR A 149 1 O LEU A 146 N SER A 202 SHEET 8 AB10 ILE A 77 ASN A 81 1 O ALA A 78 N ILE A 145 SHEET 9 AB10 ARG A 9 SER A 13 1 O TRP A 12 N ARG A 79 SHEET 10 AB10 ARG A 9 SER A 13 0 SHEET 1 AC 2 GLU A 297 ARG A 300 0 SHEET 2 AC 2 GLU A 303 VAL A 306 -1 O GLU A 303 N ARG A 300 SHEET 1 AD 2 LEU A 444 VAL A 446 0 SHEET 2 AD 2 LEU A 453 TRP A 455 -1 O TYR A 454 N LYS A 445 SHEET 1 BA 2 TYR B 2 SER B 3 0 SHEET 2 BA 2 ALA B 470 ILE B 471 -1 O ILE B 471 N TYR B 2 SHEET 1 BB10 ARG B 9 SER B 13 0 SHEET 2 BB10 VAL B 419 HIS B 424 1 O ARG B 420 N ARG B 9 SHEET 3 BB10 MET B 383 GLU B 387 1 O MET B 383 N ARG B 420 SHEET 4 BB10 ILE B 317 THR B 330 1 O ILE B 317 N TYR B 384 SHEET 5 BB10 VAL B 258 PRO B 269 1 O ILE B 260 N GLY B 318 SHEET 6 BB10 GLU B 200 ASN B 205 1 O TYR B 201 N GLY B 259 SHEET 7 BB10 TYR B 143 TYR B 149 1 O LEU B 146 N SER B 202 SHEET 8 BB10 ILE B 77 ASN B 81 1 O ALA B 78 N ILE B 145 SHEET 9 BB10 ARG B 9 SER B 13 1 O TRP B 12 N ARG B 79 SHEET 10 BB10 ARG B 9 SER B 13 0 SHEET 1 BC 2 GLU B 297 THR B 299 0 SHEET 2 BC 2 LYS B 304 VAL B 306 -1 O ILE B 305 N ILE B 298 SHEET 1 BD 2 LEU B 444 VAL B 446 0 SHEET 2 BD 2 LEU B 453 TRP B 455 -1 O TYR B 454 N LYS B 445 CISPEP 1 PRO A 223 PRO A 224 0 -3.64 CISPEP 2 TRP A 425 SER A 426 0 -4.05 CISPEP 3 PRO B 223 PRO B 224 0 1.48 CISPEP 4 TRP B 425 SER B 426 0 1.12 SITE 1 AC1 4 TRP A 455 ARG A 463 GLU A 464 GLU A 474 SITE 1 AC2 4 TYR A 2 HIS A 410 ARG A 411 ASN A 414 SITE 1 AC3 3 THR B 373 ASN B 377 SER B 415 SITE 1 AC4 14 GLN A 18 HIS A 150 TRP A 151 ASN A 205 SITE 2 AC4 14 GLU A 206 SER A 265 TYR A 322 TRP A 361 SITE 3 AC4 14 GLU A 387 TRP A 425 GLU A 432 TRP A 433 SITE 4 AC4 14 PHE A 441 HOH A2332 SITE 1 AC5 15 GLN B 18 HIS B 150 TRP B 151 ASN B 205 SITE 2 AC5 15 GLU B 206 ALA B 263 ASN B 264 TYR B 322 SITE 3 AC5 15 TRP B 361 GLU B 387 TRP B 425 GLU B 432 SITE 4 AC5 15 TRP B 433 PHE B 441 HOH B2315 CRYST1 167.943 167.943 95.875 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005954 0.003438 0.000000 0.00000 SCALE2 0.000000 0.006876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010430 0.00000 MTRIX1 1 0.440930 0.834200 -0.331190 81.05933 1 MTRIX2 1 0.832950 -0.517770 -0.195220 -127.77495 1 MTRIX3 1 -0.334330 -0.189790 -0.923150 30.86054 1