HEADER OXIDOREDUCTASE 16-FEB-06 2CF6 TITLE CRYSTAL STRUCTURES OF THE ARABIDOPSIS CINNAMYL ALCOHOL DEHYDROGENASES TITLE 2 ATCAD5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CINNAMYL ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATCCAD5, CAD; COMPND 5 EC: 1.1.1.195; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET VECTOR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151D-TOPO TA VECTOR KEYWDS LIGNIN BIOSYNTHESIS, METAL-BINDING, NADP, OXIDOREDUCTASE, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR B.YOUN,R.CAMACHO,S.G.MOINUDDIN,C.LEE,L.B.DAVIN,N.G.LEWIS,C.KANG REVDAT 3 13-DEC-23 2CF6 1 REMARK LINK REVDAT 2 24-FEB-09 2CF6 1 VERSN REVDAT 1 20-FEB-07 2CF6 0 JRNL AUTH B.YOUN,R.CAMACHO,S.G.MOINUDDIN,C.LEE,L.B.DAVIN,N.G.LEWIS, JRNL AUTH 2 C.KANG JRNL TITL CRYSTAL STRUCTURES AND CATALYTIC MECHANISMS OF THE JRNL TITL 2 ARABIDOPSIS CINNAMYL ALCOHOL DEHYDROGENASES ATCAD5 AND JRNL TITL 3 ATCAD4 JRNL REF ORG.BIOMOL.CHEM. V. 4 1687 2006 JRNL REFN ISSN 1477-0520 JRNL PMID 16633561 JRNL DOI 10.1039/B601672C REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 9631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 3.463 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1290027786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14177 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.220 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 151.96500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.35500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.35500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.98250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.35500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.35500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 227.94750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.35500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.35500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.98250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.35500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.35500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 227.94750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 151.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ILE A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 6 CB REMARK 470 GLU A 7 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 212 O2X NAP A 450 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 48 NE2 HIS A 48 CD2 -0.068 REMARK 500 HIS A 52 NE2 HIS A 52 CD2 -0.073 REMARK 500 HIS A 69 NE2 HIS A 69 CD2 -0.073 REMARK 500 HIS A 142 NE2 HIS A 142 CD2 -0.073 REMARK 500 HIS A 174 NE2 HIS A 174 CD2 -0.070 REMARK 500 HIS A 194 NE2 HIS A 194 CD2 -0.068 REMARK 500 HIS A 205 NE2 HIS A 205 CD2 -0.069 REMARK 500 HIS A 206 NE2 HIS A 206 CD2 -0.070 REMARK 500 HIS A 256 NE2 HIS A 256 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 TRP A 13 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 13 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 GLU A 31 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 CYS A 43 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU A 58 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 CYS A 103 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 TYR A 113 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 TRP A 119 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 119 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -75.24 -156.15 REMARK 500 ARG A 8 133.18 174.79 REMARK 500 ARG A 16 -27.86 -141.68 REMARK 500 PRO A 18 -77.18 -5.98 REMARK 500 LEU A 29 -170.28 -66.27 REMARK 500 THR A 32 84.85 -56.38 REMARK 500 CYS A 44 -141.43 -101.74 REMARK 500 ASN A 56 -70.22 116.59 REMARK 500 ASP A 57 37.78 37.63 REMARK 500 LEU A 58 -34.31 -171.65 REMARK 500 GLU A 70 74.99 -111.61 REMARK 500 SER A 83 -51.29 -127.94 REMARK 500 CYS A 99 167.30 172.86 REMARK 500 CYS A 100 -150.84 -78.98 REMARK 500 PRO A 105 -32.76 -36.40 REMARK 500 ASP A 109 43.84 -30.54 REMARK 500 LEU A 110 52.95 -117.86 REMARK 500 GLU A 111 0.24 -58.52 REMARK 500 TYR A 113 74.40 -103.14 REMARK 500 ASP A 123 -161.53 -124.57 REMARK 500 PRO A 130 128.22 -36.96 REMARK 500 LYS A 137 2.88 -60.25 REMARK 500 PRO A 150 159.85 -47.01 REMARK 500 CYS A 163 -55.57 -146.55 REMARK 500 LEU A 172 38.27 -73.52 REMARK 500 SER A 173 -35.34 -153.88 REMARK 500 LEU A 177 -16.91 -26.38 REMARK 500 LEU A 182 135.30 -3.25 REMARK 500 LYS A 216 22.99 -77.33 REMARK 500 GLU A 219 44.30 -82.78 REMARK 500 ALA A 220 -67.36 -147.34 REMARK 500 GLN A 222 70.04 -105.19 REMARK 500 ASP A 223 -54.41 171.16 REMARK 500 ALA A 242 -90.28 -65.87 REMARK 500 ASP A 243 71.87 -108.47 REMARK 500 SER A 244 -61.97 -92.02 REMARK 500 HIS A 255 91.95 -36.81 REMARK 500 LEU A 264 19.86 -69.31 REMARK 500 ASP A 268 14.62 81.60 REMARK 500 ASN A 279 136.14 105.77 REMARK 500 ILE A 300 -130.85 20.60 REMARK 500 ASN A 340 45.31 31.54 REMARK 500 VAL A 342 -44.39 45.66 REMARK 500 ARG A 343 61.99 77.40 REMARK 500 TYR A 344 -29.97 62.53 REMARK 500 GLU A 351 33.94 -150.69 REMARK 500 SER A 353 -7.28 -42.72 REMARK 500 LEU A 355 -73.61 -142.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 23 PRO A 24 143.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2010 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A2016 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A2017 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2019 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 47 SG REMARK 620 2 HIS A 69 NE2 91.8 REMARK 620 3 GLU A 70 OE1 101.3 93.5 REMARK 620 4 CYS A 163 SG 146.7 121.5 76.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 100 SG REMARK 620 2 CYS A 103 SG 120.2 REMARK 620 3 CYS A 106 SG 121.2 104.4 REMARK 620 4 CYS A 114 SG 88.7 100.4 120.3 REMARK 620 5 HOH A2134 O 95.7 141.7 61.8 65.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 450 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CF5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE ARABIDOPSIS CINNAMYL ALCOHOL REMARK 900 DEHYDROGENASES, ATCAD5 DBREF 2CF6 A 1 357 UNP O49482 CADH2_ARATH 1 357 SEQRES 1 A 357 MET GLY ILE MET GLU ALA GLU ARG LYS THR THR GLY TRP SEQRES 2 A 357 ALA ALA ARG ASP PRO SER GLY ILE LEU SER PRO TYR THR SEQRES 3 A 357 TYR THR LEU ARG GLU THR GLY PRO GLU ASP VAL ASN ILE SEQRES 4 A 357 ARG ILE ILE CYS CYS GLY ILE CYS HIS THR ASP LEU HIS SEQRES 5 A 357 GLN THR LYS ASN ASP LEU GLY MET SER ASN TYR PRO MET SEQRES 6 A 357 VAL PRO GLY HIS GLU VAL VAL GLY GLU VAL VAL GLU VAL SEQRES 7 A 357 GLY SER ASP VAL SER LYS PHE THR VAL GLY ASP ILE VAL SEQRES 8 A 357 GLY VAL GLY CYS LEU VAL GLY CYS CYS GLY GLY CYS SER SEQRES 9 A 357 PRO CYS GLU ARG ASP LEU GLU GLN TYR CYS PRO LYS LYS SEQRES 10 A 357 ILE TRP SER TYR ASN ASP VAL TYR ILE ASN GLY GLN PRO SEQRES 11 A 357 THR GLN GLY GLY PHE ALA LYS ALA THR VAL VAL HIS GLN SEQRES 12 A 357 LYS PHE VAL VAL LYS ILE PRO GLU GLY MET ALA VAL GLU SEQRES 13 A 357 GLN ALA ALA PRO LEU LEU CYS ALA GLY VAL THR VAL TYR SEQRES 14 A 357 SER PRO LEU SER HIS PHE GLY LEU LYS GLN PRO GLY LEU SEQRES 15 A 357 ARG GLY GLY ILE LEU GLY LEU GLY GLY VAL GLY HIS MET SEQRES 16 A 357 GLY VAL LYS ILE ALA LYS ALA MET GLY HIS HIS VAL THR SEQRES 17 A 357 VAL ILE SER SER SER ASN LYS LYS ARG GLU GLU ALA LEU SEQRES 18 A 357 GLN ASP LEU GLY ALA ASP ASP TYR VAL ILE GLY SER ASP SEQRES 19 A 357 GLN ALA LYS MET SER GLU LEU ALA ASP SER LEU ASP TYR SEQRES 20 A 357 VAL ILE ASP THR VAL PRO VAL HIS HIS ALA LEU GLU PRO SEQRES 21 A 357 TYR LEU SER LEU LEU LYS LEU ASP GLY LYS LEU ILE LEU SEQRES 22 A 357 MET GLY VAL ILE ASN ASN PRO LEU GLN PHE LEU THR PRO SEQRES 23 A 357 LEU LEU MET LEU GLY ARG LYS VAL ILE THR GLY SER PHE SEQRES 24 A 357 ILE GLY SER MET LYS GLU THR GLU GLU MET LEU GLU PHE SEQRES 25 A 357 CYS LYS GLU LYS GLY LEU SER SER ILE ILE GLU VAL VAL SEQRES 26 A 357 LYS MET ASP TYR VAL ASN THR ALA PHE GLU ARG LEU GLU SEQRES 27 A 357 LYS ASN ASP VAL ARG TYR ARG PHE VAL VAL ASP VAL GLU SEQRES 28 A 357 GLY SER ASN LEU ASP ALA HET ZN A 401 1 HET ZN A 402 1 HET NAP A 450 48 HETNAM ZN ZINC ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 HOH *140(H2 O) HELIX 1 1 HIS A 48 ASN A 56 1 9 HELIX 2 2 CYS A 103 GLU A 107 5 5 HELIX 3 3 ALA A 159 LEU A 162 5 4 HELIX 4 4 CYS A 163 VAL A 168 1 6 HELIX 5 5 SER A 170 PHE A 175 1 6 HELIX 6 6 GLY A 191 MET A 203 1 13 HELIX 7 7 ASN A 214 GLU A 218 5 5 HELIX 8 8 ASP A 234 SER A 239 1 6 HELIX 9 9 ALA A 257 SER A 263 1 7 HELIX 10 10 LEU A 284 ARG A 292 1 9 HELIX 11 11 SER A 302 LYS A 316 1 15 HELIX 12 12 LYS A 326 ASP A 328 5 3 HELIX 13 13 TYR A 329 LYS A 339 1 11 SHEET 1 AA 2 LYS A 9 THR A 10 0 SHEET 2 AA 2 TYR A 27 THR A 28 -1 O TYR A 27 N THR A 10 SHEET 1 AB 3 VAL A 75 VAL A 78 0 SHEET 2 AB 3 ASP A 36 ARG A 40 -1 O ASN A 38 N VAL A 76 SHEET 3 AB 3 ALA A 138 HIS A 142 -1 O THR A 139 N ILE A 39 SHEET 1 AC 3 VAL A 71 VAL A 72 0 SHEET 2 AC 3 VAL A 91 VAL A 93 -1 O VAL A 93 N VAL A 71 SHEET 3 AC 3 VAL A 146 LYS A 148 -1 O VAL A 147 N GLY A 92 SHEET 1 AD 2 ASP A 123 VAL A 124 0 SHEET 2 AD 2 PRO A 130 THR A 131 -1 N THR A 131 O ASP A 123 SHEET 1 AE 6 ASP A 228 ILE A 231 0 SHEET 2 AE 6 HIS A 205 SER A 211 1 O VAL A 209 N VAL A 230 SHEET 3 AE 6 GLY A 181 LEU A 187 1 O GLY A 181 N HIS A 206 SHEET 4 AE 6 LEU A 245 ASP A 250 1 N ASP A 246 O ARG A 183 SHEET 5 AE 6 LEU A 265 LEU A 273 1 N LYS A 266 O LEU A 245 SHEET 6 AE 6 VAL A 294 GLY A 297 1 O VAL A 294 N LEU A 271 SHEET 1 AF 2 GLU A 323 VAL A 325 0 SHEET 2 AF 2 PHE A 346 VAL A 348 1 O VAL A 347 N VAL A 325 LINK SG CYS A 47 ZN ZN A 402 1555 1555 2.44 LINK NE2 HIS A 69 ZN ZN A 402 1555 1555 2.47 LINK OE1 GLU A 70 ZN ZN A 402 1555 1555 2.73 LINK SG CYS A 100 ZN ZN A 401 1555 1555 2.47 LINK SG CYS A 103 ZN ZN A 401 1555 1555 2.66 LINK SG CYS A 106 ZN ZN A 401 1555 1555 2.51 LINK SG CYS A 114 ZN ZN A 401 1555 1555 2.52 LINK SG CYS A 163 ZN ZN A 402 1555 1555 2.47 LINK ZN ZN A 401 O HOH A2134 1555 1555 2.63 CISPEP 1 GLY A 33 PRO A 34 0 -15.92 CISPEP 2 TYR A 63 PRO A 64 0 1.74 SITE 1 AC1 5 CYS A 100 CYS A 103 CYS A 106 CYS A 114 SITE 2 AC1 5 HOH A2134 SITE 1 AC2 5 CYS A 47 HIS A 69 GLU A 70 CYS A 163 SITE 2 AC2 5 HOH A2135 SITE 1 AC3 19 HIS A 48 THR A 49 THR A 167 LEU A 189 SITE 2 AC3 19 GLY A 190 GLY A 191 VAL A 192 SER A 211 SITE 3 AC3 19 SER A 212 LYS A 216 THR A 251 PRO A 253 SITE 4 AC3 19 MET A 274 GLY A 275 MET A 289 SER A 298 SITE 5 AC3 19 PHE A 299 ILE A 300 HOH A2140 CRYST1 54.710 54.710 303.930 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003290 0.00000