data_2CGY
#
_entry.id 2CGY
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 2CGY pdb_00002cgy 10.2210/pdb2cgy/pdb
WWPDB D_1290028105 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2007-03-13
2 'Structure model' 1 1 2011-09-28
3 'Structure model' 1 2 2019-05-08
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2023-12-13
6 'Structure model' 2 2 2024-11-06
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 2 'Structure model' 'Derived calculations'
3 2 'Structure model' 'Non-polymer description'
4 2 'Structure model' Other
5 2 'Structure model' 'Structure summary'
6 2 'Structure model' 'Version format compliance'
7 3 'Structure model' 'Data collection'
8 3 'Structure model' 'Experimental preparation'
9 3 'Structure model' Other
10 4 'Structure model' 'Atomic model'
11 4 'Structure model' 'Data collection'
12 4 'Structure model' 'Derived calculations'
13 4 'Structure model' 'Non-polymer description'
14 4 'Structure model' 'Structure summary'
15 5 'Structure model' 'Data collection'
16 5 'Structure model' 'Database references'
17 5 'Structure model' 'Refinement description'
18 5 'Structure model' 'Structure summary'
19 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' database_PDB_rev
2 3 'Structure model' database_PDB_rev_record
3 3 'Structure model' exptl_crystal_grow
4 3 'Structure model' pdbx_database_proc
5 3 'Structure model' pdbx_database_status
6 4 'Structure model' atom_site
7 4 'Structure model' chem_comp
8 4 'Structure model' entity
9 4 'Structure model' entity_name_com
10 4 'Structure model' pdbx_branch_scheme
11 4 'Structure model' pdbx_chem_comp_identifier
12 4 'Structure model' pdbx_entity_branch
13 4 'Structure model' pdbx_entity_branch_descriptor
14 4 'Structure model' pdbx_entity_branch_link
15 4 'Structure model' pdbx_entity_branch_list
16 4 'Structure model' pdbx_entity_nonpoly
17 4 'Structure model' pdbx_molecule_features
18 4 'Structure model' pdbx_nonpoly_scheme
19 4 'Structure model' struct_conn
20 4 'Structure model' struct_site
21 4 'Structure model' struct_site_gen
22 5 'Structure model' chem_comp
23 5 'Structure model' chem_comp_atom
24 5 'Structure model' chem_comp_bond
25 5 'Structure model' database_2
26 5 'Structure model' pdbx_initial_refinement_model
27 6 'Structure model' pdbx_entry_details
28 6 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_exptl_crystal_grow.method'
2 3 'Structure model' '_pdbx_database_status.recvd_author_approval'
3 4 'Structure model' '_atom_site.B_iso_or_equiv'
4 4 'Structure model' '_atom_site.Cartn_x'
5 4 'Structure model' '_atom_site.Cartn_y'
6 4 'Structure model' '_atom_site.Cartn_z'
7 4 'Structure model' '_atom_site.auth_asym_id'
8 4 'Structure model' '_atom_site.auth_atom_id'
9 4 'Structure model' '_atom_site.auth_comp_id'
10 4 'Structure model' '_atom_site.auth_seq_id'
11 4 'Structure model' '_atom_site.label_asym_id'
12 4 'Structure model' '_atom_site.label_atom_id'
13 4 'Structure model' '_atom_site.label_comp_id'
14 4 'Structure model' '_atom_site.label_entity_id'
15 4 'Structure model' '_atom_site.type_symbol'
16 4 'Structure model' '_chem_comp.formula'
17 4 'Structure model' '_chem_comp.formula_weight'
18 4 'Structure model' '_chem_comp.id'
19 4 'Structure model' '_chem_comp.mon_nstd_flag'
20 4 'Structure model' '_chem_comp.name'
21 4 'Structure model' '_chem_comp.pdbx_synonyms'
22 4 'Structure model' '_chem_comp.type'
23 4 'Structure model' '_entity.formula_weight'
24 4 'Structure model' '_entity.pdbx_description'
25 4 'Structure model' '_entity.src_method'
26 4 'Structure model' '_entity.type'
27 4 'Structure model' '_struct_conn.conn_type_id'
28 4 'Structure model' '_struct_conn.id'
29 4 'Structure model' '_struct_conn.pdbx_dist_value'
30 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
31 4 'Structure model' '_struct_conn.pdbx_role'
32 4 'Structure model' '_struct_conn.pdbx_value_order'
33 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
34 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
35 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
36 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
37 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
38 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
39 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
40 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
41 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
42 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
43 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
44 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
45 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
46 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
47 4 'Structure model' '_struct_conn.ptnr2_symmetry'
48 5 'Structure model' '_chem_comp.pdbx_synonyms'
49 5 'Structure model' '_database_2.pdbx_DOI'
50 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 2CGY
_pdbx_database_status.recvd_initial_deposition_date 2006-03-10
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 2CCV unspecified 'STRUCTURE OF HELIX POMATIA AGGLUTININ WITH ZINC AND N-ACETYL-ALPHA-D-GALACTOSEAMINE (GALNAC)'
PDB 2CE6 unspecified 'STRUCTURE OF HELIX POMATIA AGGLUTININ WITH NO LIGANDS'
PDB 2CGZ unspecified 'STRUCTURE OF HELIX POMATIA AGGLUTININ WITH TN ANTIGEN'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sanchez, J.-F.' 1
'Lescar, J.' 2
'Audfray, A.' 3
'Gautier, C.' 4
'Chazalet, V.' 5
'Gagnon, J.' 6
'Breton, C.' 7
'Imberty, A.' 8
'Mitchell, E.P.' 9
#
_citation.id primary
_citation.title
'Structural Basis for Recognition of Breast and Colon Cancer Epitopes Tn Antigen and Forssman Disaccharide by Helix Pomatia Lectin.'
_citation.journal_abbrev Glycobiology
_citation.journal_volume 17
_citation.page_first 1077
_citation.page_last ?
_citation.year 2007
_citation.journal_id_ASTM ?
_citation.country UK
_citation.journal_id_ISSN 0959-6658
_citation.journal_id_CSD 9999
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 17652409
_citation.pdbx_database_id_DOI 10.1093/GLYCOB/CWM077
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Lescar, J.' 1 ?
primary 'Sanchez, J.-F.' 2 ?
primary 'Audfray, A.' 3 ?
primary 'Coll, J.' 4 ?
primary 'Breton, C.' 5 ?
primary 'Mitchell, E.P.' 6 ?
primary 'Imberty, A.' 7 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat AGGLUTININ 11339.764 1 ? ? ?
'GLYCOLYSIS SITE AT N34'
2 branched man '2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose' 424.401 1 ? ? ?
?
3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ?
?
4 water nat water 18.015 1 ? ? ?
?
#
_entity_name_com.entity_id 2
_entity_name_com.name 'Forssman antigen fragment'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;RVQSGKINCGDDAGWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPTGFKASC
YTWHNTKVYSMSISWISIENY
;
_entity_poly.pdbx_seq_one_letter_code_can
;RVQSGKINCGDDAGWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPTGFKASC
YTWHNTKVYSMSISWISIENY
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ARG n
1 2 VAL n
1 3 GLN n
1 4 SER n
1 5 GLY n
1 6 LYS n
1 7 ILE n
1 8 ASN n
1 9 CYS n
1 10 GLY n
1 11 ASP n
1 12 ASP n
1 13 ALA n
1 14 GLY n
1 15 TRP n
1 16 ALA n
1 17 LYS n
1 18 VAL n
1 19 PRO n
1 20 SER n
1 21 ASP n
1 22 ASP n
1 23 PRO n
1 24 GLY n
1 25 ARG n
1 26 ASP n
1 27 ASN n
1 28 THR n
1 29 ARG n
1 30 GLU n
1 31 LEU n
1 32 ALA n
1 33 LYS n
1 34 ASN n
1 35 ILE n
1 36 THR n
1 37 PHE n
1 38 ALA n
1 39 SER n
1 40 PRO n
1 41 TYR n
1 42 CYS n
1 43 ARG n
1 44 PRO n
1 45 PRO n
1 46 VAL n
1 47 VAL n
1 48 LEU n
1 49 LEU n
1 50 SER n
1 51 ILE n
1 52 THR n
1 53 GLN n
1 54 LEU n
1 55 ASP n
1 56 VAL n
1 57 GLU n
1 58 GLN n
1 59 SER n
1 60 GLN n
1 61 ASN n
1 62 LEU n
1 63 ARG n
1 64 VAL n
1 65 ILE n
1 66 ALA n
1 67 ARG n
1 68 LEU n
1 69 TYR n
1 70 SER n
1 71 VAL n
1 72 SER n
1 73 PRO n
1 74 THR n
1 75 GLY n
1 76 PHE n
1 77 LYS n
1 78 ALA n
1 79 SER n
1 80 CYS n
1 81 TYR n
1 82 THR n
1 83 TRP n
1 84 HIS n
1 85 ASN n
1 86 THR n
1 87 LYS n
1 88 VAL n
1 89 TYR n
1 90 SER n
1 91 MET n
1 92 SER n
1 93 ILE n
1 94 SER n
1 95 TRP n
1 96 ILE n
1 97 SER n
1 98 ILE n
1 99 GLU n
1 100 ASN n
1 101 TYR n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name 'ROMAN SNAIL'
_entity_src_nat.pdbx_organism_scientific 'HELIX POMATIA'
_entity_src_nat.pdbx_ncbi_taxonomy_id 6536
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ 'ALBUMIN GLAND'
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details SIGMA-ALDRICH
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DGalpNAca1-3DGalpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,2,1/[a2112h-1b_1-5_2*NCC/3=O][a2112h-1a_1-5_2*NCC/3=O]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0
3 2 '[][b-D-GalpNAc]{[(3+1)][a-D-GalpNAc]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 A2G
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 NGA
_pdbx_entity_branch_link.atom_id_2 O3
_pdbx_entity_branch_link.leaving_atom_id_2 HO3
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose
;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
;
'C8 H15 N O6' 221.208
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
NGA 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-galactopyranose
;N-acetyl-beta-D-galactosamine; 2-acetamido-2-deoxy-beta-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-D-GALACTOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca
A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine
A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc
A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
NGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAcb
NGA 'COMMON NAME' GMML 1.0 N-acetyl-b-D-galactopyranosamine
NGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc
NGA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ARG 1 1 1 ARG ARG A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 GLN 3 3 3 GLN GLN A . n
A 1 4 SER 4 4 4 SER SER A . n
A 1 5 GLY 5 5 5 GLY GLY A . n
A 1 6 LYS 6 6 6 LYS LYS A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 ASN 8 8 8 ASN ASN A . n
A 1 9 CYS 9 9 9 CYS CYS A . n
A 1 10 GLY 10 10 10 GLY GLY A . n
A 1 11 ASP 11 11 11 ASP ASP A . n
A 1 12 ASP 12 12 12 ASP ASP A . n
A 1 13 ALA 13 13 13 ALA ALA A . n
A 1 14 GLY 14 14 14 GLY GLY A . n
A 1 15 TRP 15 15 15 TRP TRP A . n
A 1 16 ALA 16 16 16 ALA ALA A . n
A 1 17 LYS 17 17 17 LYS LYS A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 PRO 19 19 19 PRO PRO A . n
A 1 20 SER 20 20 20 SER SER A . n
A 1 21 ASP 21 21 21 ASP ASP A . n
A 1 22 ASP 22 22 22 ASP ASP A . n
A 1 23 PRO 23 23 23 PRO PRO A . n
A 1 24 GLY 24 24 24 GLY GLY A . n
A 1 25 ARG 25 25 25 ARG ARG A . n
A 1 26 ASP 26 26 26 ASP ASP A . n
A 1 27 ASN 27 27 27 ASN ASN A . n
A 1 28 THR 28 28 28 THR THR A . n
A 1 29 ARG 29 29 29 ARG ARG A . n
A 1 30 GLU 30 30 30 GLU GLU A . n
A 1 31 LEU 31 31 31 LEU LEU A . n
A 1 32 ALA 32 32 32 ALA ALA A . n
A 1 33 LYS 33 33 33 LYS LYS A . n
A 1 34 ASN 34 34 34 ASN ASN A . n
A 1 35 ILE 35 35 35 ILE ILE A . n
A 1 36 THR 36 36 36 THR THR A . n
A 1 37 PHE 37 37 37 PHE PHE A . n
A 1 38 ALA 38 38 38 ALA ALA A . n
A 1 39 SER 39 39 39 SER SER A . n
A 1 40 PRO 40 40 40 PRO PRO A . n
A 1 41 TYR 41 41 41 TYR TYR A . n
A 1 42 CYS 42 42 42 CYS CYS A . n
A 1 43 ARG 43 43 43 ARG ARG A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 PRO 45 45 45 PRO PRO A . n
A 1 46 VAL 46 46 46 VAL VAL A . n
A 1 47 VAL 47 47 47 VAL VAL A . n
A 1 48 LEU 48 48 48 LEU LEU A . n
A 1 49 LEU 49 49 49 LEU LEU A . n
A 1 50 SER 50 50 50 SER SER A . n
A 1 51 ILE 51 51 51 ILE ILE A . n
A 1 52 THR 52 52 52 THR THR A . n
A 1 53 GLN 53 53 53 GLN GLN A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASP 55 55 55 ASP ASP A . n
A 1 56 VAL 56 56 56 VAL VAL A . n
A 1 57 GLU 57 57 57 GLU GLU A . n
A 1 58 GLN 58 58 58 GLN GLN A . n
A 1 59 SER 59 59 59 SER SER A . n
A 1 60 GLN 60 60 60 GLN GLN A . n
A 1 61 ASN 61 61 61 ASN ASN A . n
A 1 62 LEU 62 62 62 LEU LEU A . n
A 1 63 ARG 63 63 63 ARG ARG A . n
A 1 64 VAL 64 64 64 VAL VAL A . n
A 1 65 ILE 65 65 65 ILE ILE A . n
A 1 66 ALA 66 66 66 ALA ALA A . n
A 1 67 ARG 67 67 67 ARG ARG A . n
A 1 68 LEU 68 68 68 LEU LEU A . n
A 1 69 TYR 69 69 69 TYR TYR A . n
A 1 70 SER 70 70 70 SER SER A . n
A 1 71 VAL 71 71 71 VAL VAL A . n
A 1 72 SER 72 72 72 SER SER A . n
A 1 73 PRO 73 73 73 PRO PRO A . n
A 1 74 THR 74 74 74 THR THR A . n
A 1 75 GLY 75 75 75 GLY GLY A . n
A 1 76 PHE 76 76 76 PHE PHE A . n
A 1 77 LYS 77 77 77 LYS LYS A . n
A 1 78 ALA 78 78 78 ALA ALA A . n
A 1 79 SER 79 79 79 SER SER A . n
A 1 80 CYS 80 80 80 CYS CYS A . n
A 1 81 TYR 81 81 81 TYR TYR A . n
A 1 82 THR 82 82 82 THR THR A . n
A 1 83 TRP 83 83 83 TRP TRP A . n
A 1 84 HIS 84 84 84 HIS HIS A . n
A 1 85 ASN 85 85 85 ASN ASN A . n
A 1 86 THR 86 86 86 THR THR A . n
A 1 87 LYS 87 87 87 LYS LYS A . n
A 1 88 VAL 88 88 88 VAL VAL A . n
A 1 89 TYR 89 89 89 TYR TYR A . n
A 1 90 SER 90 90 90 SER SER A . n
A 1 91 MET 91 91 91 MET MET A . n
A 1 92 SER 92 92 92 SER SER A . n
A 1 93 ILE 93 93 93 ILE ILE A . n
A 1 94 SER 94 94 94 SER SER A . n
A 1 95 TRP 95 95 95 TRP TRP A . n
A 1 96 ILE 96 96 96 ILE ILE A . n
A 1 97 SER 97 97 97 SER SER A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 GLU 99 99 99 GLU GLU A . n
A 1 100 ASN 100 100 100 ASN ASN A . n
A 1 101 TYR 101 101 ? ? ? A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NGA 1 B NGA 1 A FSM 1102 n
B 2 A2G 2 B A2G 2 A FSM 1102 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG 1 1101 1101 NAG NAG A .
D 4 HOH 1 2001 2001 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A ARG 1 ? CG ? A ARG 1 CG
2 1 Y 1 A ARG 1 ? CD ? A ARG 1 CD
3 1 Y 1 A ARG 1 ? NE ? A ARG 1 NE
4 1 Y 1 A ARG 1 ? CZ ? A ARG 1 CZ
5 1 Y 1 A ARG 1 ? NH1 ? A ARG 1 NH1
6 1 Y 1 A ARG 1 ? NH2 ? A ARG 1 NH2
7 1 Y 1 A ARG 43 ? CG ? A ARG 43 CG
8 1 Y 1 A ARG 43 ? CD ? A ARG 43 CD
9 1 Y 1 A ARG 43 ? NE ? A ARG 43 NE
10 1 Y 1 A ARG 43 ? CZ ? A ARG 43 CZ
11 1 Y 1 A ARG 43 ? NH1 ? A ARG 43 NH1
12 1 Y 1 A ARG 43 ? NH2 ? A ARG 43 NH2
13 1 Y 1 A GLU 99 ? CB ? A GLU 99 CB
14 1 Y 1 A GLU 99 ? CG ? A GLU 99 CG
15 1 Y 1 A GLU 99 ? CD ? A GLU 99 CD
16 1 Y 1 A GLU 99 ? OE1 ? A GLU 99 OE1
17 1 Y 1 A GLU 99 ? OE2 ? A GLU 99 OE2
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.1.24 ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
MOLREP phasing . ? 4
#
_cell.entry_id 2CGY
_cell.length_a 62.019
_cell.length_b 62.019
_cell.length_c 106.642
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 2CGY
_symmetry.space_group_name_H-M 'P 63 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 182
#
_exptl.entry_id 2CGY
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.3
_exptl_crystal.density_percent_sol 47.2
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;HANGING DROP METHOD WITH PRECIPITATION SOLUTION CONTAINING LITHIUM SULPHATE (2 M) AND AMMONIUM SULPHATE (3.5 M) IN SODIUM CITRATE BUFFER (1.5M, PH 6.5) AND 10MM OF FORSMANN LIGAND.
;
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC CCD'
_diffrn_detector.pdbx_collection_date 2000-04-08
_diffrn_detector.details 'TOROIDAL MIRROR'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator DIAMOND
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.933
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID14-2'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID14-2
_diffrn_source.pdbx_wavelength 0.933
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 2CGY
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30.000
_reflns.d_resolution_high 2.800
_reflns.number_obs 2945
_reflns.number_all ?
_reflns.percent_possible_obs 87.9
_reflns.pdbx_Rmerge_I_obs 0.07000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 17.1000
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 7.000
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.80
_reflns_shell.d_res_low 2.90
_reflns_shell.percent_possible_all 93.5
_reflns_shell.Rmerge_I_obs 0.36000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 4.000
_reflns_shell.pdbx_redundancy ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 2CGY
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 2792
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 20.00
_refine.ls_d_res_high 2.80
_refine.ls_percent_reflns_obs 88.1
_refine.ls_R_factor_obs 0.265
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.262
_refine.ls_R_factor_R_free 0.320
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.500
_refine.ls_number_reflns_R_free 132
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.900
_refine.correlation_coeff_Fo_to_Fc_free 0.857
_refine.B_iso_mean 54.29
_refine.aniso_B[1][1] -3.92000
_refine.aniso_B[2][2] -3.92000
_refine.aniso_B[3][3] 5.88000
_refine.aniso_B[1][2] -1.96000
_refine.aniso_B[1][3] 0.00000
_refine.aniso_B[2][3] 0.00000
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.'
_refine.pdbx_starting_model 'PDB ENTRY 2CE6'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free 0.512
_refine.overall_SU_ML 0.335
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 16.219
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 767
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 43
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 811
_refine_hist.d_res_high 2.80
_refine_hist.d_res_low 20.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.008 0.022 ? 831 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.002 0.020 ? 710 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.242 2.009 ? 1137 'X-RAY DIFFRACTION' ?
r_angle_other_deg 0.730 3.003 ? 1646 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 7.086 5.000 ? 99 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.068 0.200 ? 135 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.003 0.020 ? 887 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.001 0.020 ? 154 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.190 0.200 ? 153 'X-RAY DIFFRACTION' ?
r_nbd_other 0.209 0.200 ? 858 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 0.081 0.200 ? 527 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.198 0.200 ? 21 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.339 0.200 ? 15 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 0.252 0.200 ? 52 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.013 0.200 ? 2 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 0.322 1.500 ? 499 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 0.597 2.000 ? 810 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 0.750 3.000 ? 332 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it 1.348 4.500 ? 327 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.80
_refine_ls_shell.d_res_low 2.87
_refine_ls_shell.number_reflns_R_work 199
_refine_ls_shell.R_factor_R_work 0.3250
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.6560
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 9
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 2CGY
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 2CGY
_struct.title 'STRUCTURE OF HELIX POMATIA AGGLUTININ WITH FORSMANN ANTIGEN'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 2CGY
_struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN'
_struct_keywords.text 'LECTIN, SNAIL, SUGAR BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code Q2F1K8_HELPO
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession Q2F1K8
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 2CGY
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 101
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q2F1K8
_struct_ref_seq.db_align_beg 21
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 121
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 101
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 2CGY ASN A 8 ? UNP Q2F1K8 ASP 28 conflict 8 1
1 2CGY ASP A 11 ? UNP Q2F1K8 ASN 31 conflict 11 2
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details hexameric
_pdbx_struct_assembly.oligomeric_count 6
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 13680 ?
1 MORE -58.5 ?
1 'SSA (A^2)' 25760 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -53.3210000000
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -31.0095000000 -0.8660254038
-0.5000000000 0.0000000000 53.7100295173 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/2 0.5000000000 -0.8660254038 0.0000000000 31.0095000000 -0.8660254038
-0.5000000000 0.0000000000 53.7100295173 0.0000000000 0.0000000000 -1.0000000000 -53.3210000000
5 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/2 0.5000000000 0.8660254038 0.0000000000 -31.0095000000 0.8660254038
-0.5000000000 0.0000000000 53.7100295173 0.0000000000 0.0000000000 -1.0000000000 -53.3210000000
6 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 31.0095000000 0.8660254038
-0.5000000000 0.0000000000 53.7100295173 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 9 A CYS 80 1_555 ? ? ? ? ? ? ? 2.024 ? ?
covale1 covale one ? A ASN 34 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 34 A NAG 1101 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation
covale2 covale both ? B NGA . O3 ? ? ? 1_555 B A2G . C1 ? ? B NGA 1 B A2G 2 1_555 ? ? ? ? ? ? ? 1.455 sing ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG C . ? ASN A 34 ? NAG A 1101 ? 1_555 ASN A 34 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 CYS A 9 ? CYS A 80 ? CYS A 9 ? 1_555 CYS A 80 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 3 ?
AA2 ? 4 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA2 1 2 ? anti-parallel
AA2 2 3 ? anti-parallel
AA2 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 VAL A 2 ? ASN A 8 ? VAL A 2 ASN A 8
AA1 2 VAL A 88 ? ILE A 98 ? VAL A 88 ILE A 98
AA1 3 VAL A 46 ? VAL A 56 ? VAL A 46 VAL A 56
AA2 1 ALA A 16 ? LYS A 17 ? ALA A 16 LYS A 17
AA2 2 ARG A 29 ? THR A 36 ? ARG A 29 THR A 36
AA2 3 GLY A 75 ? THR A 82 ? GLY A 75 THR A 82
AA2 4 ILE A 65 ? VAL A 71 ? ILE A 65 VAL A 71
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N GLN A 3 ? N GLN A 3 O SER A 97 ? O SER A 97
AA1 2 3 O TYR A 89 ? O TYR A 89 N ASP A 55 ? N ASP A 55
AA2 1 2 N ALA A 16 ? N ALA A 16 O GLU A 30 ? O GLU A 30
AA2 2 3 N ARG A 29 ? N ARG A 29 O THR A 82 ? O THR A 82
AA2 3 4 O SER A 79 ? O SER A 79 N ARG A 67 ? N ARG A 67
#
_pdbx_entry_details.entry_id 2CGY
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 ND2
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 ASN
_pdbx_validate_close_contact.auth_seq_id_1 34
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 C2
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 NAG
_pdbx_validate_close_contact.auth_seq_id_2 1101
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.12
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 GLU A 30 ? ? -170.86 122.17
2 1 PRO A 40 ? ? -49.71 150.57
3 1 HIS A 84 ? ? 64.30 -135.98
4 1 GLU A 99 ? ? -59.53 -84.88
#
_pdbx_molecule_features.prd_id PRD_900083
_pdbx_molecule_features.name 'Forssman antigen fragment'
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class Antigen
_pdbx_molecule_features.details oligosaccharide
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900083
_pdbx_molecule.asym_id B
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id ASN
_pdbx_struct_mod_residue.label_seq_id 34
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id ASN
_pdbx_struct_mod_residue.auth_seq_id 34
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id ASN
_pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE'
#
loop_
_pdbx_database_remark.id
_pdbx_database_remark.text
650
;
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
;
700
;
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
;
#
_pdbx_unobs_or_zero_occ_residues.id 1
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 1
_pdbx_unobs_or_zero_occ_residues.polymer_flag Y
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 1
_pdbx_unobs_or_zero_occ_residues.auth_asym_id A
_pdbx_unobs_or_zero_occ_residues.auth_comp_id TYR
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 101
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_residues.label_asym_id A
_pdbx_unobs_or_zero_occ_residues.label_comp_id TYR
_pdbx_unobs_or_zero_occ_residues.label_seq_id 101
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A2G O5 O N N 1
A2G C1 C N S 2
A2G O1 O N N 3
A2G C2 C N R 4
A2G N2 N N N 5
A2G C3 C N R 6
A2G O3 O N N 7
A2G C4 C N R 8
A2G O4 O N N 9
A2G C5 C N R 10
A2G C6 C N N 11
A2G O6 O N N 12
A2G C7 C N N 13
A2G O7 O N N 14
A2G C8 C N N 15
A2G H1 H N N 16
A2G HO1 H N N 17
A2G H2 H N N 18
A2G HN2 H N N 19
A2G H3 H N N 20
A2G HO3 H N N 21
A2G H4 H N N 22
A2G HO4 H N N 23
A2G H5 H N N 24
A2G H61 H N N 25
A2G H81 H N N 26
A2G H82 H N N 27
A2G H83 H N N 28
A2G H62 H N N 29
A2G HO6 H N N 30
ALA N N N N 31
ALA CA C N S 32
ALA C C N N 33
ALA O O N N 34
ALA CB C N N 35
ALA OXT O N N 36
ALA H H N N 37
ALA H2 H N N 38
ALA HA H N N 39
ALA HB1 H N N 40
ALA HB2 H N N 41
ALA HB3 H N N 42
ALA HXT H N N 43
ARG N N N N 44
ARG CA C N S 45
ARG C C N N 46
ARG O O N N 47
ARG CB C N N 48
ARG CG C N N 49
ARG CD C N N 50
ARG NE N N N 51
ARG CZ C N N 52
ARG NH1 N N N 53
ARG NH2 N N N 54
ARG OXT O N N 55
ARG H H N N 56
ARG H2 H N N 57
ARG HA H N N 58
ARG HB2 H N N 59
ARG HB3 H N N 60
ARG HG2 H N N 61
ARG HG3 H N N 62
ARG HD2 H N N 63
ARG HD3 H N N 64
ARG HE H N N 65
ARG HH11 H N N 66
ARG HH12 H N N 67
ARG HH21 H N N 68
ARG HH22 H N N 69
ARG HXT H N N 70
ASN N N N N 71
ASN CA C N S 72
ASN C C N N 73
ASN O O N N 74
ASN CB C N N 75
ASN CG C N N 76
ASN OD1 O N N 77
ASN ND2 N N N 78
ASN OXT O N N 79
ASN H H N N 80
ASN H2 H N N 81
ASN HA H N N 82
ASN HB2 H N N 83
ASN HB3 H N N 84
ASN HD21 H N N 85
ASN HD22 H N N 86
ASN HXT H N N 87
ASP N N N N 88
ASP CA C N S 89
ASP C C N N 90
ASP O O N N 91
ASP CB C N N 92
ASP CG C N N 93
ASP OD1 O N N 94
ASP OD2 O N N 95
ASP OXT O N N 96
ASP H H N N 97
ASP H2 H N N 98
ASP HA H N N 99
ASP HB2 H N N 100
ASP HB3 H N N 101
ASP HD2 H N N 102
ASP HXT H N N 103
CYS N N N N 104
CYS CA C N R 105
CYS C C N N 106
CYS O O N N 107
CYS CB C N N 108
CYS SG S N N 109
CYS OXT O N N 110
CYS H H N N 111
CYS H2 H N N 112
CYS HA H N N 113
CYS HB2 H N N 114
CYS HB3 H N N 115
CYS HG H N N 116
CYS HXT H N N 117
GLN N N N N 118
GLN CA C N S 119
GLN C C N N 120
GLN O O N N 121
GLN CB C N N 122
GLN CG C N N 123
GLN CD C N N 124
GLN OE1 O N N 125
GLN NE2 N N N 126
GLN OXT O N N 127
GLN H H N N 128
GLN H2 H N N 129
GLN HA H N N 130
GLN HB2 H N N 131
GLN HB3 H N N 132
GLN HG2 H N N 133
GLN HG3 H N N 134
GLN HE21 H N N 135
GLN HE22 H N N 136
GLN HXT H N N 137
GLU N N N N 138
GLU CA C N S 139
GLU C C N N 140
GLU O O N N 141
GLU CB C N N 142
GLU CG C N N 143
GLU CD C N N 144
GLU OE1 O N N 145
GLU OE2 O N N 146
GLU OXT O N N 147
GLU H H N N 148
GLU H2 H N N 149
GLU HA H N N 150
GLU HB2 H N N 151
GLU HB3 H N N 152
GLU HG2 H N N 153
GLU HG3 H N N 154
GLU HE2 H N N 155
GLU HXT H N N 156
GLY N N N N 157
GLY CA C N N 158
GLY C C N N 159
GLY O O N N 160
GLY OXT O N N 161
GLY H H N N 162
GLY H2 H N N 163
GLY HA2 H N N 164
GLY HA3 H N N 165
GLY HXT H N N 166
HIS N N N N 167
HIS CA C N S 168
HIS C C N N 169
HIS O O N N 170
HIS CB C N N 171
HIS CG C Y N 172
HIS ND1 N Y N 173
HIS CD2 C Y N 174
HIS CE1 C Y N 175
HIS NE2 N Y N 176
HIS OXT O N N 177
HIS H H N N 178
HIS H2 H N N 179
HIS HA H N N 180
HIS HB2 H N N 181
HIS HB3 H N N 182
HIS HD1 H N N 183
HIS HD2 H N N 184
HIS HE1 H N N 185
HIS HE2 H N N 186
HIS HXT H N N 187
HOH O O N N 188
HOH H1 H N N 189
HOH H2 H N N 190
ILE N N N N 191
ILE CA C N S 192
ILE C C N N 193
ILE O O N N 194
ILE CB C N S 195
ILE CG1 C N N 196
ILE CG2 C N N 197
ILE CD1 C N N 198
ILE OXT O N N 199
ILE H H N N 200
ILE H2 H N N 201
ILE HA H N N 202
ILE HB H N N 203
ILE HG12 H N N 204
ILE HG13 H N N 205
ILE HG21 H N N 206
ILE HG22 H N N 207
ILE HG23 H N N 208
ILE HD11 H N N 209
ILE HD12 H N N 210
ILE HD13 H N N 211
ILE HXT H N N 212
LEU N N N N 213
LEU CA C N S 214
LEU C C N N 215
LEU O O N N 216
LEU CB C N N 217
LEU CG C N N 218
LEU CD1 C N N 219
LEU CD2 C N N 220
LEU OXT O N N 221
LEU H H N N 222
LEU H2 H N N 223
LEU HA H N N 224
LEU HB2 H N N 225
LEU HB3 H N N 226
LEU HG H N N 227
LEU HD11 H N N 228
LEU HD12 H N N 229
LEU HD13 H N N 230
LEU HD21 H N N 231
LEU HD22 H N N 232
LEU HD23 H N N 233
LEU HXT H N N 234
LYS N N N N 235
LYS CA C N S 236
LYS C C N N 237
LYS O O N N 238
LYS CB C N N 239
LYS CG C N N 240
LYS CD C N N 241
LYS CE C N N 242
LYS NZ N N N 243
LYS OXT O N N 244
LYS H H N N 245
LYS H2 H N N 246
LYS HA H N N 247
LYS HB2 H N N 248
LYS HB3 H N N 249
LYS HG2 H N N 250
LYS HG3 H N N 251
LYS HD2 H N N 252
LYS HD3 H N N 253
LYS HE2 H N N 254
LYS HE3 H N N 255
LYS HZ1 H N N 256
LYS HZ2 H N N 257
LYS HZ3 H N N 258
LYS HXT H N N 259
MET N N N N 260
MET CA C N S 261
MET C C N N 262
MET O O N N 263
MET CB C N N 264
MET CG C N N 265
MET SD S N N 266
MET CE C N N 267
MET OXT O N N 268
MET H H N N 269
MET H2 H N N 270
MET HA H N N 271
MET HB2 H N N 272
MET HB3 H N N 273
MET HG2 H N N 274
MET HG3 H N N 275
MET HE1 H N N 276
MET HE2 H N N 277
MET HE3 H N N 278
MET HXT H N N 279
NAG C1 C N R 280
NAG C2 C N R 281
NAG C3 C N R 282
NAG C4 C N S 283
NAG C5 C N R 284
NAG C6 C N N 285
NAG C7 C N N 286
NAG C8 C N N 287
NAG N2 N N N 288
NAG O1 O N N 289
NAG O3 O N N 290
NAG O4 O N N 291
NAG O5 O N N 292
NAG O6 O N N 293
NAG O7 O N N 294
NAG H1 H N N 295
NAG H2 H N N 296
NAG H3 H N N 297
NAG H4 H N N 298
NAG H5 H N N 299
NAG H61 H N N 300
NAG H62 H N N 301
NAG H81 H N N 302
NAG H82 H N N 303
NAG H83 H N N 304
NAG HN2 H N N 305
NAG HO1 H N N 306
NAG HO3 H N N 307
NAG HO4 H N N 308
NAG HO6 H N N 309
NGA C1 C N R 310
NGA C2 C N R 311
NGA C3 C N R 312
NGA C4 C N R 313
NGA C5 C N R 314
NGA C6 C N N 315
NGA C7 C N N 316
NGA C8 C N N 317
NGA N2 N N N 318
NGA O1 O N N 319
NGA O3 O N N 320
NGA O4 O N N 321
NGA O5 O N N 322
NGA O6 O N N 323
NGA O7 O N N 324
NGA H1 H N N 325
NGA H2 H N N 326
NGA H3 H N N 327
NGA H4 H N N 328
NGA H5 H N N 329
NGA H61 H N N 330
NGA H62 H N N 331
NGA H81 H N N 332
NGA H82 H N N 333
NGA H83 H N N 334
NGA HN2 H N N 335
NGA HO1 H N N 336
NGA HO3 H N N 337
NGA HO4 H N N 338
NGA HO6 H N N 339
PHE N N N N 340
PHE CA C N S 341
PHE C C N N 342
PHE O O N N 343
PHE CB C N N 344
PHE CG C Y N 345
PHE CD1 C Y N 346
PHE CD2 C Y N 347
PHE CE1 C Y N 348
PHE CE2 C Y N 349
PHE CZ C Y N 350
PHE OXT O N N 351
PHE H H N N 352
PHE H2 H N N 353
PHE HA H N N 354
PHE HB2 H N N 355
PHE HB3 H N N 356
PHE HD1 H N N 357
PHE HD2 H N N 358
PHE HE1 H N N 359
PHE HE2 H N N 360
PHE HZ H N N 361
PHE HXT H N N 362
PRO N N N N 363
PRO CA C N S 364
PRO C C N N 365
PRO O O N N 366
PRO CB C N N 367
PRO CG C N N 368
PRO CD C N N 369
PRO OXT O N N 370
PRO H H N N 371
PRO HA H N N 372
PRO HB2 H N N 373
PRO HB3 H N N 374
PRO HG2 H N N 375
PRO HG3 H N N 376
PRO HD2 H N N 377
PRO HD3 H N N 378
PRO HXT H N N 379
SER N N N N 380
SER CA C N S 381
SER C C N N 382
SER O O N N 383
SER CB C N N 384
SER OG O N N 385
SER OXT O N N 386
SER H H N N 387
SER H2 H N N 388
SER HA H N N 389
SER HB2 H N N 390
SER HB3 H N N 391
SER HG H N N 392
SER HXT H N N 393
THR N N N N 394
THR CA C N S 395
THR C C N N 396
THR O O N N 397
THR CB C N R 398
THR OG1 O N N 399
THR CG2 C N N 400
THR OXT O N N 401
THR H H N N 402
THR H2 H N N 403
THR HA H N N 404
THR HB H N N 405
THR HG1 H N N 406
THR HG21 H N N 407
THR HG22 H N N 408
THR HG23 H N N 409
THR HXT H N N 410
TRP N N N N 411
TRP CA C N S 412
TRP C C N N 413
TRP O O N N 414
TRP CB C N N 415
TRP CG C Y N 416
TRP CD1 C Y N 417
TRP CD2 C Y N 418
TRP NE1 N Y N 419
TRP CE2 C Y N 420
TRP CE3 C Y N 421
TRP CZ2 C Y N 422
TRP CZ3 C Y N 423
TRP CH2 C Y N 424
TRP OXT O N N 425
TRP H H N N 426
TRP H2 H N N 427
TRP HA H N N 428
TRP HB2 H N N 429
TRP HB3 H N N 430
TRP HD1 H N N 431
TRP HE1 H N N 432
TRP HE3 H N N 433
TRP HZ2 H N N 434
TRP HZ3 H N N 435
TRP HH2 H N N 436
TRP HXT H N N 437
TYR N N N N 438
TYR CA C N S 439
TYR C C N N 440
TYR O O N N 441
TYR CB C N N 442
TYR CG C Y N 443
TYR CD1 C Y N 444
TYR CD2 C Y N 445
TYR CE1 C Y N 446
TYR CE2 C Y N 447
TYR CZ C Y N 448
TYR OH O N N 449
TYR OXT O N N 450
TYR H H N N 451
TYR H2 H N N 452
TYR HA H N N 453
TYR HB2 H N N 454
TYR HB3 H N N 455
TYR HD1 H N N 456
TYR HD2 H N N 457
TYR HE1 H N N 458
TYR HE2 H N N 459
TYR HH H N N 460
TYR HXT H N N 461
VAL N N N N 462
VAL CA C N S 463
VAL C C N N 464
VAL O O N N 465
VAL CB C N N 466
VAL CG1 C N N 467
VAL CG2 C N N 468
VAL OXT O N N 469
VAL H H N N 470
VAL H2 H N N 471
VAL HA H N N 472
VAL HB H N N 473
VAL HG11 H N N 474
VAL HG12 H N N 475
VAL HG13 H N N 476
VAL HG21 H N N 477
VAL HG22 H N N 478
VAL HG23 H N N 479
VAL HXT H N N 480
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A2G O5 C5 sing N N 1
A2G C1 O5 sing N N 2
A2G C1 C2 sing N N 3
A2G C1 H1 sing N N 4
A2G O1 C1 sing N N 5
A2G O1 HO1 sing N N 6
A2G C2 C3 sing N N 7
A2G C2 H2 sing N N 8
A2G N2 C2 sing N N 9
A2G N2 HN2 sing N N 10
A2G C3 C4 sing N N 11
A2G C3 O3 sing N N 12
A2G C3 H3 sing N N 13
A2G O3 HO3 sing N N 14
A2G C4 O4 sing N N 15
A2G C4 H4 sing N N 16
A2G O4 HO4 sing N N 17
A2G C5 C4 sing N N 18
A2G C5 C6 sing N N 19
A2G C5 H5 sing N N 20
A2G C6 O6 sing N N 21
A2G C6 H61 sing N N 22
A2G C7 N2 sing N N 23
A2G O7 C7 doub N N 24
A2G C8 C7 sing N N 25
A2G C8 H81 sing N N 26
A2G C8 H82 sing N N 27
A2G C8 H83 sing N N 28
A2G C6 H62 sing N N 29
A2G O6 HO6 sing N N 30
ALA N CA sing N N 31
ALA N H sing N N 32
ALA N H2 sing N N 33
ALA CA C sing N N 34
ALA CA CB sing N N 35
ALA CA HA sing N N 36
ALA C O doub N N 37
ALA C OXT sing N N 38
ALA CB HB1 sing N N 39
ALA CB HB2 sing N N 40
ALA CB HB3 sing N N 41
ALA OXT HXT sing N N 42
ARG N CA sing N N 43
ARG N H sing N N 44
ARG N H2 sing N N 45
ARG CA C sing N N 46
ARG CA CB sing N N 47
ARG CA HA sing N N 48
ARG C O doub N N 49
ARG C OXT sing N N 50
ARG CB CG sing N N 51
ARG CB HB2 sing N N 52
ARG CB HB3 sing N N 53
ARG CG CD sing N N 54
ARG CG HG2 sing N N 55
ARG CG HG3 sing N N 56
ARG CD NE sing N N 57
ARG CD HD2 sing N N 58
ARG CD HD3 sing N N 59
ARG NE CZ sing N N 60
ARG NE HE sing N N 61
ARG CZ NH1 sing N N 62
ARG CZ NH2 doub N N 63
ARG NH1 HH11 sing N N 64
ARG NH1 HH12 sing N N 65
ARG NH2 HH21 sing N N 66
ARG NH2 HH22 sing N N 67
ARG OXT HXT sing N N 68
ASN N CA sing N N 69
ASN N H sing N N 70
ASN N H2 sing N N 71
ASN CA C sing N N 72
ASN CA CB sing N N 73
ASN CA HA sing N N 74
ASN C O doub N N 75
ASN C OXT sing N N 76
ASN CB CG sing N N 77
ASN CB HB2 sing N N 78
ASN CB HB3 sing N N 79
ASN CG OD1 doub N N 80
ASN CG ND2 sing N N 81
ASN ND2 HD21 sing N N 82
ASN ND2 HD22 sing N N 83
ASN OXT HXT sing N N 84
ASP N CA sing N N 85
ASP N H sing N N 86
ASP N H2 sing N N 87
ASP CA C sing N N 88
ASP CA CB sing N N 89
ASP CA HA sing N N 90
ASP C O doub N N 91
ASP C OXT sing N N 92
ASP CB CG sing N N 93
ASP CB HB2 sing N N 94
ASP CB HB3 sing N N 95
ASP CG OD1 doub N N 96
ASP CG OD2 sing N N 97
ASP OD2 HD2 sing N N 98
ASP OXT HXT sing N N 99
CYS N CA sing N N 100
CYS N H sing N N 101
CYS N H2 sing N N 102
CYS CA C sing N N 103
CYS CA CB sing N N 104
CYS CA HA sing N N 105
CYS C O doub N N 106
CYS C OXT sing N N 107
CYS CB SG sing N N 108
CYS CB HB2 sing N N 109
CYS CB HB3 sing N N 110
CYS SG HG sing N N 111
CYS OXT HXT sing N N 112
GLN N CA sing N N 113
GLN N H sing N N 114
GLN N H2 sing N N 115
GLN CA C sing N N 116
GLN CA CB sing N N 117
GLN CA HA sing N N 118
GLN C O doub N N 119
GLN C OXT sing N N 120
GLN CB CG sing N N 121
GLN CB HB2 sing N N 122
GLN CB HB3 sing N N 123
GLN CG CD sing N N 124
GLN CG HG2 sing N N 125
GLN CG HG3 sing N N 126
GLN CD OE1 doub N N 127
GLN CD NE2 sing N N 128
GLN NE2 HE21 sing N N 129
GLN NE2 HE22 sing N N 130
GLN OXT HXT sing N N 131
GLU N CA sing N N 132
GLU N H sing N N 133
GLU N H2 sing N N 134
GLU CA C sing N N 135
GLU CA CB sing N N 136
GLU CA HA sing N N 137
GLU C O doub N N 138
GLU C OXT sing N N 139
GLU CB CG sing N N 140
GLU CB HB2 sing N N 141
GLU CB HB3 sing N N 142
GLU CG CD sing N N 143
GLU CG HG2 sing N N 144
GLU CG HG3 sing N N 145
GLU CD OE1 doub N N 146
GLU CD OE2 sing N N 147
GLU OE2 HE2 sing N N 148
GLU OXT HXT sing N N 149
GLY N CA sing N N 150
GLY N H sing N N 151
GLY N H2 sing N N 152
GLY CA C sing N N 153
GLY CA HA2 sing N N 154
GLY CA HA3 sing N N 155
GLY C O doub N N 156
GLY C OXT sing N N 157
GLY OXT HXT sing N N 158
HIS N CA sing N N 159
HIS N H sing N N 160
HIS N H2 sing N N 161
HIS CA C sing N N 162
HIS CA CB sing N N 163
HIS CA HA sing N N 164
HIS C O doub N N 165
HIS C OXT sing N N 166
HIS CB CG sing N N 167
HIS CB HB2 sing N N 168
HIS CB HB3 sing N N 169
HIS CG ND1 sing Y N 170
HIS CG CD2 doub Y N 171
HIS ND1 CE1 doub Y N 172
HIS ND1 HD1 sing N N 173
HIS CD2 NE2 sing Y N 174
HIS CD2 HD2 sing N N 175
HIS CE1 NE2 sing Y N 176
HIS CE1 HE1 sing N N 177
HIS NE2 HE2 sing N N 178
HIS OXT HXT sing N N 179
HOH O H1 sing N N 180
HOH O H2 sing N N 181
ILE N CA sing N N 182
ILE N H sing N N 183
ILE N H2 sing N N 184
ILE CA C sing N N 185
ILE CA CB sing N N 186
ILE CA HA sing N N 187
ILE C O doub N N 188
ILE C OXT sing N N 189
ILE CB CG1 sing N N 190
ILE CB CG2 sing N N 191
ILE CB HB sing N N 192
ILE CG1 CD1 sing N N 193
ILE CG1 HG12 sing N N 194
ILE CG1 HG13 sing N N 195
ILE CG2 HG21 sing N N 196
ILE CG2 HG22 sing N N 197
ILE CG2 HG23 sing N N 198
ILE CD1 HD11 sing N N 199
ILE CD1 HD12 sing N N 200
ILE CD1 HD13 sing N N 201
ILE OXT HXT sing N N 202
LEU N CA sing N N 203
LEU N H sing N N 204
LEU N H2 sing N N 205
LEU CA C sing N N 206
LEU CA CB sing N N 207
LEU CA HA sing N N 208
LEU C O doub N N 209
LEU C OXT sing N N 210
LEU CB CG sing N N 211
LEU CB HB2 sing N N 212
LEU CB HB3 sing N N 213
LEU CG CD1 sing N N 214
LEU CG CD2 sing N N 215
LEU CG HG sing N N 216
LEU CD1 HD11 sing N N 217
LEU CD1 HD12 sing N N 218
LEU CD1 HD13 sing N N 219
LEU CD2 HD21 sing N N 220
LEU CD2 HD22 sing N N 221
LEU CD2 HD23 sing N N 222
LEU OXT HXT sing N N 223
LYS N CA sing N N 224
LYS N H sing N N 225
LYS N H2 sing N N 226
LYS CA C sing N N 227
LYS CA CB sing N N 228
LYS CA HA sing N N 229
LYS C O doub N N 230
LYS C OXT sing N N 231
LYS CB CG sing N N 232
LYS CB HB2 sing N N 233
LYS CB HB3 sing N N 234
LYS CG CD sing N N 235
LYS CG HG2 sing N N 236
LYS CG HG3 sing N N 237
LYS CD CE sing N N 238
LYS CD HD2 sing N N 239
LYS CD HD3 sing N N 240
LYS CE NZ sing N N 241
LYS CE HE2 sing N N 242
LYS CE HE3 sing N N 243
LYS NZ HZ1 sing N N 244
LYS NZ HZ2 sing N N 245
LYS NZ HZ3 sing N N 246
LYS OXT HXT sing N N 247
MET N CA sing N N 248
MET N H sing N N 249
MET N H2 sing N N 250
MET CA C sing N N 251
MET CA CB sing N N 252
MET CA HA sing N N 253
MET C O doub N N 254
MET C OXT sing N N 255
MET CB CG sing N N 256
MET CB HB2 sing N N 257
MET CB HB3 sing N N 258
MET CG SD sing N N 259
MET CG HG2 sing N N 260
MET CG HG3 sing N N 261
MET SD CE sing N N 262
MET CE HE1 sing N N 263
MET CE HE2 sing N N 264
MET CE HE3 sing N N 265
MET OXT HXT sing N N 266
NAG C1 C2 sing N N 267
NAG C1 O1 sing N N 268
NAG C1 O5 sing N N 269
NAG C1 H1 sing N N 270
NAG C2 C3 sing N N 271
NAG C2 N2 sing N N 272
NAG C2 H2 sing N N 273
NAG C3 C4 sing N N 274
NAG C3 O3 sing N N 275
NAG C3 H3 sing N N 276
NAG C4 C5 sing N N 277
NAG C4 O4 sing N N 278
NAG C4 H4 sing N N 279
NAG C5 C6 sing N N 280
NAG C5 O5 sing N N 281
NAG C5 H5 sing N N 282
NAG C6 O6 sing N N 283
NAG C6 H61 sing N N 284
NAG C6 H62 sing N N 285
NAG C7 C8 sing N N 286
NAG C7 N2 sing N N 287
NAG C7 O7 doub N N 288
NAG C8 H81 sing N N 289
NAG C8 H82 sing N N 290
NAG C8 H83 sing N N 291
NAG N2 HN2 sing N N 292
NAG O1 HO1 sing N N 293
NAG O3 HO3 sing N N 294
NAG O4 HO4 sing N N 295
NAG O6 HO6 sing N N 296
NGA C1 C2 sing N N 297
NGA C1 O1 sing N N 298
NGA C1 O5 sing N N 299
NGA C1 H1 sing N N 300
NGA C2 C3 sing N N 301
NGA C2 N2 sing N N 302
NGA C2 H2 sing N N 303
NGA C3 C4 sing N N 304
NGA C3 O3 sing N N 305
NGA C3 H3 sing N N 306
NGA C4 C5 sing N N 307
NGA C4 O4 sing N N 308
NGA C4 H4 sing N N 309
NGA C5 C6 sing N N 310
NGA C5 O5 sing N N 311
NGA C5 H5 sing N N 312
NGA C6 O6 sing N N 313
NGA C6 H61 sing N N 314
NGA C6 H62 sing N N 315
NGA C7 C8 sing N N 316
NGA C7 N2 sing N N 317
NGA C7 O7 doub N N 318
NGA C8 H81 sing N N 319
NGA C8 H82 sing N N 320
NGA C8 H83 sing N N 321
NGA N2 HN2 sing N N 322
NGA O1 HO1 sing N N 323
NGA O3 HO3 sing N N 324
NGA O4 HO4 sing N N 325
NGA O6 HO6 sing N N 326
PHE N CA sing N N 327
PHE N H sing N N 328
PHE N H2 sing N N 329
PHE CA C sing N N 330
PHE CA CB sing N N 331
PHE CA HA sing N N 332
PHE C O doub N N 333
PHE C OXT sing N N 334
PHE CB CG sing N N 335
PHE CB HB2 sing N N 336
PHE CB HB3 sing N N 337
PHE CG CD1 doub Y N 338
PHE CG CD2 sing Y N 339
PHE CD1 CE1 sing Y N 340
PHE CD1 HD1 sing N N 341
PHE CD2 CE2 doub Y N 342
PHE CD2 HD2 sing N N 343
PHE CE1 CZ doub Y N 344
PHE CE1 HE1 sing N N 345
PHE CE2 CZ sing Y N 346
PHE CE2 HE2 sing N N 347
PHE CZ HZ sing N N 348
PHE OXT HXT sing N N 349
PRO N CA sing N N 350
PRO N CD sing N N 351
PRO N H sing N N 352
PRO CA C sing N N 353
PRO CA CB sing N N 354
PRO CA HA sing N N 355
PRO C O doub N N 356
PRO C OXT sing N N 357
PRO CB CG sing N N 358
PRO CB HB2 sing N N 359
PRO CB HB3 sing N N 360
PRO CG CD sing N N 361
PRO CG HG2 sing N N 362
PRO CG HG3 sing N N 363
PRO CD HD2 sing N N 364
PRO CD HD3 sing N N 365
PRO OXT HXT sing N N 366
SER N CA sing N N 367
SER N H sing N N 368
SER N H2 sing N N 369
SER CA C sing N N 370
SER CA CB sing N N 371
SER CA HA sing N N 372
SER C O doub N N 373
SER C OXT sing N N 374
SER CB OG sing N N 375
SER CB HB2 sing N N 376
SER CB HB3 sing N N 377
SER OG HG sing N N 378
SER OXT HXT sing N N 379
THR N CA sing N N 380
THR N H sing N N 381
THR N H2 sing N N 382
THR CA C sing N N 383
THR CA CB sing N N 384
THR CA HA sing N N 385
THR C O doub N N 386
THR C OXT sing N N 387
THR CB OG1 sing N N 388
THR CB CG2 sing N N 389
THR CB HB sing N N 390
THR OG1 HG1 sing N N 391
THR CG2 HG21 sing N N 392
THR CG2 HG22 sing N N 393
THR CG2 HG23 sing N N 394
THR OXT HXT sing N N 395
TRP N CA sing N N 396
TRP N H sing N N 397
TRP N H2 sing N N 398
TRP CA C sing N N 399
TRP CA CB sing N N 400
TRP CA HA sing N N 401
TRP C O doub N N 402
TRP C OXT sing N N 403
TRP CB CG sing N N 404
TRP CB HB2 sing N N 405
TRP CB HB3 sing N N 406
TRP CG CD1 doub Y N 407
TRP CG CD2 sing Y N 408
TRP CD1 NE1 sing Y N 409
TRP CD1 HD1 sing N N 410
TRP CD2 CE2 doub Y N 411
TRP CD2 CE3 sing Y N 412
TRP NE1 CE2 sing Y N 413
TRP NE1 HE1 sing N N 414
TRP CE2 CZ2 sing Y N 415
TRP CE3 CZ3 doub Y N 416
TRP CE3 HE3 sing N N 417
TRP CZ2 CH2 doub Y N 418
TRP CZ2 HZ2 sing N N 419
TRP CZ3 CH2 sing Y N 420
TRP CZ3 HZ3 sing N N 421
TRP CH2 HH2 sing N N 422
TRP OXT HXT sing N N 423
TYR N CA sing N N 424
TYR N H sing N N 425
TYR N H2 sing N N 426
TYR CA C sing N N 427
TYR CA CB sing N N 428
TYR CA HA sing N N 429
TYR C O doub N N 430
TYR C OXT sing N N 431
TYR CB CG sing N N 432
TYR CB HB2 sing N N 433
TYR CB HB3 sing N N 434
TYR CG CD1 doub Y N 435
TYR CG CD2 sing Y N 436
TYR CD1 CE1 sing Y N 437
TYR CD1 HD1 sing N N 438
TYR CD2 CE2 doub Y N 439
TYR CD2 HD2 sing N N 440
TYR CE1 CZ doub Y N 441
TYR CE1 HE1 sing N N 442
TYR CE2 CZ sing Y N 443
TYR CE2 HE2 sing N N 444
TYR CZ OH sing N N 445
TYR OH HH sing N N 446
TYR OXT HXT sing N N 447
VAL N CA sing N N 448
VAL N H sing N N 449
VAL N H2 sing N N 450
VAL CA C sing N N 451
VAL CA CB sing N N 452
VAL CA HA sing N N 453
VAL C O doub N N 454
VAL C OXT sing N N 455
VAL CB CG1 sing N N 456
VAL CB CG2 sing N N 457
VAL CB HB sing N N 458
VAL CG1 HG11 sing N N 459
VAL CG1 HG12 sing N N 460
VAL CG1 HG13 sing N N 461
VAL CG2 HG21 sing N N 462
VAL CG2 HG22 sing N N 463
VAL CG2 HG23 sing N N 464
VAL OXT HXT sing N N 465
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NGA 1 n
2 A2G 2 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 2CE6
_pdbx_initial_refinement_model.details 'PDB ENTRY 2CE6'
#
_atom_sites.entry_id 2CGY
_atom_sites.fract_transf_matrix[1][1] 0.016124
_atom_sites.fract_transf_matrix[1][2] 0.009309
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.018618
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.009377
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_